Wall clock time and date at job start Tue Mar 31 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47127 * 2 1 4 4 C 1.50693 * 109.47551 * 239.99976 * 2 1 3 5 5 O 1.21283 * 120.00502 * 239.99788 * 4 2 1 6 6 N 1.34781 * 119.99962 * 59.99706 * 4 2 1 7 7 C 1.47512 * 118.75465 * 0.02562 * 6 4 2 8 8 C 1.53570 * 111.02873 * 138.34964 * 7 6 4 9 9 C 1.51538 * 109.57681 * 320.01837 * 8 7 6 10 10 O 1.42157 * 108.75089 * 91.40517 * 9 8 7 11 11 C 1.38016 * 119.43778 * 272.76599 * 10 9 8 12 12 H 1.08998 * 109.47071 * 303.42486 * 11 10 9 13 13 C 1.53005 * 109.46438 * 183.43304 * 11 10 9 14 14 N 1.46496 * 109.47400 * 64.98898 * 13 11 10 15 15 C 1.36939 * 120.00077 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99728 * 359.72656 * 15 14 13 17 17 C 1.38815 * 119.99845 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14 20 20 H 1.48498 * 109.47416 * 59.99578 * 19 17 15 21 21 H 1.48508 * 109.46609 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46903 * 299.99163 * 19 17 15 23 23 C 1.45120 * 118.75805 * 180.02562 * 6 4 2 24 24 C 1.53007 * 109.47471 * 119.99831 * 2 1 3 25 25 F 1.39899 * 109.47138 * 180.02562 * 24 2 1 26 26 F 1.39900 * 109.46757 * 300.00548 * 24 2 1 27 27 F 1.39896 * 109.46914 * 59.99999 * 24 2 1 28 28 H 1.09005 * 109.47316 * 299.99716 * 1 2 3 29 29 H 1.08998 * 109.47612 * 59.99968 * 1 2 3 30 30 H 1.09006 * 109.46824 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.16448 * 258.74641 * 7 6 4 32 32 H 1.09002 * 109.16907 * 18.00283 * 7 6 4 33 33 H 1.08994 * 109.45740 * 80.05789 * 8 7 6 34 34 H 1.08999 * 109.45344 * 200.01314 * 8 7 6 35 35 H 1.09004 * 109.58846 * 211.18476 * 9 8 7 36 36 H 1.08996 * 109.59201 * 331.47473 * 9 8 7 37 37 H 1.09007 * 109.47086 * 304.98800 * 13 11 10 38 38 H 1.08993 * 109.46908 * 184.99157 * 13 11 10 39 39 H 0.97004 * 120.00009 * 0.02562 * 14 13 11 40 40 H 0.97000 * 119.99517 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.45845 * 149.28520 * 23 6 4 42 42 H 1.08991 * 109.46316 * 29.32248 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 0.8576 0.9518 -2.5580 8 6 1.3615 1.8890 -3.6652 9 6 2.8762 1.9313 -3.6443 10 8 3.3735 0.9294 -4.5216 11 6 3.5659 -0.3525 -4.0476 12 1 4.2366 -0.3255 -3.1888 13 6 4.1829 -1.2162 -5.1496 14 7 5.5221 -0.7161 -5.4698 15 6 6.2722 -1.3359 -6.4334 16 1 5.8782 -2.1961 -6.9541 17 6 7.5413 -0.8622 -6.7365 18 7 8.0215 0.1859 -6.1016 19 14 8.5675 -1.7124 -8.0455 20 1 7.8485 -1.6685 -9.3441 21 1 9.8732 -1.0177 -8.1794 22 1 8.7964 -3.1265 -7.6540 23 6 2.2048 -0.9551 -3.6210 24 6 2.0401 -0.7212 1.2493 25 9 3.4391 -0.7207 1.2495 26 9 1.5736 -0.0617 2.3915 27 9 1.5738 -2.0402 1.2493 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.1650 0.6490 -2.7833 32 1 0.8719 1.4832 -1.6064 33 1 1.0219 1.5223 -4.6338 34 1 0.9685 2.8920 -3.4987 35 1 3.2191 2.9112 -3.9767 36 1 3.2331 1.7435 -2.6317 37 1 3.5559 -1.1718 -6.0401 38 1 4.2531 -2.2482 -4.8058 39 1 5.8778 0.0537 -4.9988 40 1 8.9082 0.5171 -6.3137 41 1 1.4909 -0.8546 -4.4384 42 1 2.3342 -2.0101 -3.3797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201162241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:53 Heat of formation + Delta-G solvation = -205.697815 kcal Electronic energy + Delta-G solvation = -29479.237402 eV Core-core repulsion = 24852.514679 eV Total energy + Delta-G solvation = -4626.722723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.27434 -47.79959 -47.66203 -40.95137 -38.70280 -36.03646 -34.64303 -34.36538 -32.87680 -30.94476 -28.90075 -27.23954 -26.51230 -25.46711 -23.70378 -22.34276 -21.71644 -21.00286 -19.84446 -18.94520 -18.51356 -17.70741 -17.24426 -17.13394 -16.54424 -16.29190 -15.99082 -15.07911 -14.90612 -14.60477 -14.50848 -14.36064 -14.16577 -14.07074 -13.98768 -13.84462 -13.79862 -13.56713 -13.20520 -12.96090 -12.77389 -12.75772 -12.44064 -12.27235 -12.07147 -11.77340 -11.68408 -11.44250 -11.01975 -10.81543 -10.74640 -10.32284 -10.13885 -9.97404 -9.66141 -9.49254 -8.81301 -8.71351 -6.83799 -5.67942 -2.96325 2.18858 2.22173 2.68930 3.39242 3.49957 3.53497 3.55001 3.60526 3.72054 3.89385 4.17808 4.41341 4.42039 4.51051 4.56392 4.65655 4.76879 4.95380 5.03391 5.13797 5.18648 5.24398 5.33486 5.36817 5.46952 5.52874 5.64795 5.76315 5.87122 5.92348 6.04484 6.31608 6.33399 6.65348 6.76992 6.91860 7.75045 7.76004 7.95193 8.50247 9.61691 10.19533 10.55307 11.54944 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.003246 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.819888 B = 8623.975737 C = 9392.348760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.164 4.164 3 H 0.138 0.862 4 C 0.514 3.486 5 O -0.509 6.509 6 N -0.600 5.600 7 C 0.098 3.902 8 C -0.168 4.168 9 C 0.072 3.928 10 O -0.367 6.367 11 C 0.088 3.912 12 H 0.053 0.947 13 C 0.166 3.834 14 N -0.726 5.726 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.081 3.919 24 C 0.473 3.527 25 F -0.170 7.170 26 F -0.183 7.183 27 F -0.171 7.171 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.087 0.913 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.726 5.075 14.254 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.187 4.187 3 H 0.156 0.844 4 C 0.300 3.700 5 O -0.383 6.383 6 N -0.333 5.333 7 C -0.024 4.024 8 C -0.207 4.207 9 C -0.005 4.005 10 O -0.285 6.285 11 C 0.028 3.972 12 H 0.071 0.929 13 C 0.038 3.962 14 N -0.370 5.370 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.042 4.042 24 C 0.419 3.581 25 F -0.151 7.151 26 F -0.164 7.164 27 F -0.153 7.153 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.248 4.445 14.011 25.836 hybrid contribution 0.663 -0.170 -0.005 0.685 sum -20.584 4.275 14.006 25.262 Atomic orbital electron populations 1.22161 0.89313 1.05148 1.05422 1.22644 1.01413 1.03006 0.91635 0.84406 1.19846 0.80935 0.84973 0.84290 1.90860 1.36198 1.25350 1.85878 1.47786 1.51149 1.28762 1.05634 1.22322 0.93977 0.85645 1.00493 1.22550 0.98421 0.99846 0.99855 1.22120 0.91662 0.92399 0.94283 1.86455 1.84486 1.17970 1.39570 1.22301 0.93501 0.83194 0.98207 0.92884 1.20605 0.88069 0.93918 0.93595 1.42213 1.12393 1.36691 1.45720 1.19187 0.96336 1.09252 1.12234 0.91216 1.24732 0.97649 0.98344 1.00229 1.69668 1.18028 1.25869 1.44557 0.86257 0.79619 0.78692 0.81547 1.21299 1.21727 1.21284 1.22524 0.97087 0.98069 0.86538 1.19720 0.76173 0.77878 0.84364 1.93250 1.28959 1.96313 1.96615 1.93179 1.88599 1.80864 1.53762 1.93207 1.88284 1.37140 1.96645 0.89859 0.88786 0.90439 0.90726 0.89618 0.89673 0.89441 0.89114 0.93639 0.95456 0.94728 0.77951 0.93554 0.89447 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 8.46 37.16 0.31 -0.57 16 2 C -0.16 -1.42 1.88 -91.77 -0.17 -1.59 16 3 H 0.14 0.84 7.41 -51.93 -0.38 0.46 16 4 C 0.51 6.38 6.81 -10.99 -0.07 6.31 16 5 O -0.51 -8.64 14.26 5.55 0.08 -8.56 16 6 N -0.60 -6.54 2.19 -172.45 -0.38 -6.92 16 7 C 0.10 0.67 4.46 -3.19 -0.01 0.65 16 8 C -0.17 -1.34 5.79 -27.18 -0.16 -1.50 16 9 C 0.07 0.87 6.37 36.42 0.23 1.10 16 10 O -0.37 -6.26 9.38 -26.54 -0.25 -6.51 16 11 C 0.09 1.53 2.68 -25.76 -0.07 1.46 16 12 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 13 C 0.17 3.52 5.92 -4.04 -0.02 3.49 16 14 N -0.73 -19.47 5.54 -59.91 -0.33 -19.80 16 15 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 19 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.08 1.08 4.87 -3.81 -0.02 1.07 16 24 C 0.47 5.31 2.42 37.16 0.09 5.40 16 25 F -0.17 -2.38 16.40 2.25 0.04 -2.35 16 26 F -0.18 -1.79 16.80 2.25 0.04 -1.75 16 27 F -0.17 -2.21 15.88 2.25 0.04 -2.17 16 28 H 0.08 0.33 7.80 -51.93 -0.41 -0.07 16 29 H 0.09 0.34 4.61 -51.93 -0.24 0.10 16 30 H 0.08 0.50 7.80 -51.93 -0.41 0.09 16 31 H 0.07 0.37 7.55 -51.93 -0.39 -0.02 16 32 H 0.09 0.38 4.96 -51.93 -0.26 0.13 16 33 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.55 7.41 -51.93 -0.38 0.16 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.39 11.04 7.65 -40.82 -0.31 10.73 16 40 H 0.25 7.68 8.31 -40.82 -0.34 7.35 16 41 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 42 H 0.10 1.40 7.27 -51.93 -0.38 1.03 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -35.69 344.99 -5.67 -41.36 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.66 Total: 3.74 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.14 Total: 8.21 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.01 Total: -55.17 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.17 Total: -15.07 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.69 -5.67 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201162241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.338 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds