Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47202 * 300.00095 * 3 2 1 6 6 H 1.48508 * 109.46954 * 59.99502 * 3 2 1 7 7 C 1.38817 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00052 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.53046 * 109.46126 * 64.97120 * 11 10 9 13 13 C 1.53159 * 109.32667 * 181.38514 * 12 11 10 14 14 N 1.46928 * 108.76987 * 305.35456 * 13 12 11 15 15 C 1.34771 * 120.63178 * 233.63011 * 14 13 12 16 16 O 1.21284 * 119.99847 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00350 * 359.97438 * 15 14 13 18 18 C 1.52994 * 109.47537 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.53546 * 55.70135 * 18 17 15 20 20 N 1.47314 * 110.59825 * 292.86926 * 18 17 15 21 21 C 1.34527 * 106.61736 * 241.47568 * 20 18 17 22 22 O 1.21540 * 123.77053 * 180.02562 * 21 20 18 23 23 N 1.33790 * 112.46159 * 359.97438 * 21 20 18 24 24 C 1.35124 * 111.68426 * 359.91301 * 23 21 20 25 25 O 1.21234 * 127.33562 * 180.09849 * 24 23 21 26 26 C 1.46931 * 118.73792 * 53.61250 * 14 13 12 27 27 C 1.53039 * 109.45758 * 185.02626 * 11 10 9 28 28 H 0.96995 * 120.00347 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00072 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47194 * 60.00035 * 10 9 7 31 31 H 1.09007 * 109.46730 * 299.99577 * 10 9 7 32 32 H 1.09002 * 109.45884 * 304.99721 * 11 10 9 33 33 H 1.08996 * 109.49379 * 301.32134 * 12 11 10 34 34 H 1.08994 * 109.49581 * 61.41903 * 12 11 10 35 35 H 1.08999 * 109.58991 * 185.56748 * 13 12 11 36 36 H 1.09002 * 109.70860 * 65.20753 * 13 12 11 37 37 H 1.09005 * 109.47033 * 300.00164 * 17 15 14 38 38 H 1.09001 * 109.47321 * 59.99201 * 17 15 14 39 39 H 0.96997 * 126.68748 * 61.50653 * 20 18 17 40 40 H 0.97000 * 124.18086 * 180.02562 * 23 21 20 41 41 H 1.08998 * 109.58425 * 186.61021 * 26 14 13 42 42 H 1.08999 * 109.58795 * 66.17471 * 26 14 13 43 43 H 1.08997 * 109.49901 * 298.57269 * 27 11 10 44 44 H 1.08992 * 109.50107 * 58.67848 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0640 -4.8197 0.0008 12 6 0.2701 -4.8109 -1.3077 13 6 -0.7478 -5.9551 -1.2907 14 7 -0.0393 -7.2142 -1.0236 15 6 -0.1791 -8.2695 -1.8502 16 8 0.4115 -9.3033 -1.6190 17 6 -1.0691 -8.1650 -3.0618 18 6 -1.0507 -9.4913 -3.8241 19 1 -1.3375 -10.3133 -3.1683 20 7 0.2795 -9.7346 -4.4087 21 6 0.1092 -9.7914 -5.7420 22 8 1.0138 -9.9818 -6.5311 23 7 -1.1673 -9.6160 -6.1022 24 6 -1.9673 -9.4270 -5.0297 25 8 -3.1656 -9.2435 -5.0296 26 6 0.8247 -7.3010 0.1617 27 6 1.8252 -6.1412 0.1284 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6842 -3.7141 0.8921 31 1 2.6855 -3.7149 -0.8879 32 1 0.3790 -4.7125 0.8419 33 1 -0.2533 -3.8602 -1.4091 34 1 0.9520 -4.9428 -2.1477 35 1 -1.2469 -6.0146 -2.2579 36 1 -1.4864 -5.7784 -0.5087 37 1 -2.0881 -7.9412 -2.7458 38 1 -0.7069 -7.3679 -3.7111 39 1 1.1150 -9.8348 -3.9263 40 1 -1.4807 -9.6251 -7.0201 41 1 1.3634 -8.2485 0.1526 42 1 0.2161 -7.2327 1.0633 43 1 2.4923 -6.2607 -0.7253 44 1 2.4086 -6.1376 1.0490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205479669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -102.762805 kcal Electronic energy + Delta-G solvation = -27558.117236 eV Core-core repulsion = 23510.007602 eV Total energy + Delta-G solvation = -4048.109634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.41957 -41.21054 -39.75112 -38.98494 -37.34694 -36.53856 -35.07189 -34.50342 -32.82186 -31.94170 -31.46894 -28.35055 -26.81024 -25.33747 -24.27730 -23.80896 -23.25651 -22.45707 -21.41747 -20.05979 -19.41254 -19.15917 -18.30458 -17.89157 -17.70316 -16.93950 -16.76036 -16.67503 -16.65603 -16.15926 -15.63838 -15.46074 -15.38437 -15.29719 -15.16478 -14.75720 -14.52737 -14.10643 -13.92534 -13.80664 -13.46974 -13.07869 -12.94337 -12.89520 -12.77373 -12.25421 -12.16062 -12.10487 -11.95326 -11.65846 -11.52286 -11.51251 -11.43987 -11.29164 -10.93932 -10.81339 -10.56166 -9.64591 -8.97233 -7.95032 -5.22357 0.46509 1.39335 1.47670 1.48235 1.55663 1.57850 1.87505 1.94404 2.18499 2.56252 2.87818 3.38772 3.41379 3.54307 3.78506 3.83256 3.86472 3.95093 4.15734 4.30817 4.32449 4.41474 4.44813 4.48383 4.61675 4.63922 4.75839 4.85627 4.89115 4.99021 5.04948 5.08328 5.11078 5.19131 5.32012 5.48704 5.56356 5.59172 5.74876 5.86253 6.28477 6.31944 6.39304 7.06920 7.09437 7.35402 8.11838 8.35874 9.28361 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.002457 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.567729 B =11393.147934 C =11896.719153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.742 5.742 10 C 0.156 3.844 11 C -0.085 4.085 12 C -0.122 4.122 13 C 0.110 3.890 14 N -0.604 5.604 15 C 0.521 3.479 16 O -0.571 6.571 17 C -0.142 4.142 18 C 0.114 3.886 19 H 0.152 0.848 20 N -0.704 5.704 21 C 0.704 3.296 22 O -0.586 6.586 23 N -0.670 5.670 24 C 0.542 3.458 25 O -0.482 6.482 26 C 0.116 3.884 27 C -0.117 4.117 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.447 0.553 40 H 0.442 0.558 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 -21.925 -5.954 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.385 5.385 10 C 0.029 3.971 11 C -0.104 4.104 12 C -0.160 4.160 13 C -0.013 4.013 14 N -0.336 5.336 15 C 0.310 3.690 16 O -0.451 6.451 17 C -0.182 4.182 18 C 0.005 3.995 19 H 0.169 0.831 20 N -0.369 5.369 21 C 0.404 3.596 22 O -0.463 6.463 23 N -0.341 5.341 24 C 0.329 3.671 25 O -0.352 6.352 26 C -0.006 4.006 27 C -0.155 4.155 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.136 0.864 39 H 0.293 0.707 40 H 0.286 0.714 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.741 -22.359 -6.138 23.666 hybrid contribution 0.469 1.373 -0.156 1.459 sum -4.272 -20.986 -6.294 22.322 Atomic orbital electron populations 1.69785 1.06351 1.25966 1.59527 1.25480 0.96402 1.00787 1.03790 0.85148 0.78179 0.80171 0.76710 1.19416 1.22000 1.22021 1.19625 0.91361 0.85593 1.41077 0.91179 1.42553 1.05709 1.00970 1.89257 1.20833 0.94000 0.85164 0.97084 1.21202 0.97030 0.93828 0.98318 1.21817 0.98348 0.98567 0.97265 1.21926 0.93952 0.81446 1.03931 1.48178 1.46512 1.13030 1.25880 1.20560 0.81787 0.82760 0.83854 1.90686 1.49530 1.29832 1.75040 1.21976 1.03871 0.97182 0.95199 1.21844 0.81919 1.01391 0.94380 0.83116 1.45661 1.11331 1.75208 1.04676 1.15956 0.82476 0.77266 0.83944 1.91049 1.43849 1.56163 1.55204 1.44267 1.08689 1.68139 1.13032 1.20747 0.87017 0.73575 0.85809 1.90882 1.12724 1.45723 1.85855 1.21610 0.92408 0.99220 0.87353 1.21820 0.97775 0.92921 1.03007 0.93970 0.79045 0.96642 0.96956 0.91218 0.91791 0.92289 0.87251 0.89714 0.83687 0.86413 0.70668 0.71440 0.89119 0.90243 0.92079 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.14 13.06 21.65 0.28 -56.85 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 7 C -0.24 -13.37 9.99 84.04 0.84 -12.53 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -35.87 5.32 -343.45 -1.83 -37.70 16 10 C 0.16 5.82 5.65 86.38 0.49 6.31 16 11 C -0.08 -2.30 2.19 -10.76 -0.02 -2.32 16 12 C -0.12 -2.97 5.25 30.66 0.16 -2.81 16 13 C 0.11 1.76 6.34 86.35 0.55 2.31 16 14 N -0.60 -10.07 2.97 -818.94 -2.43 -12.50 16 15 C 0.52 8.24 7.59 87.66 0.67 8.90 16 16 O -0.57 -11.74 14.41 -3.04 -0.04 -11.78 16 17 C -0.14 -1.39 3.81 29.85 0.11 -1.27 16 18 C 0.11 1.20 3.15 44.37 0.14 1.34 16 19 H 0.15 1.31 8.01 -2.39 -0.02 1.29 16 20 N -0.70 -9.71 5.88 -459.61 -2.70 -12.42 16 21 C 0.70 12.16 8.99 179.44 1.61 13.77 16 22 O -0.59 -15.12 18.04 -3.84 -0.07 -15.19 16 23 N -0.67 -8.13 5.72 -440.66 -2.52 -10.65 16 24 C 0.54 6.69 8.17 87.88 0.72 7.40 16 25 O -0.48 -8.32 18.02 -2.89 -0.05 -8.37 16 26 C 0.12 2.08 6.43 86.36 0.56 2.64 16 27 C -0.12 -2.46 5.36 30.67 0.16 -2.30 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.38 18.99 6.85 -92.70 -0.63 18.35 16 30 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.93 7.15 -2.39 -0.02 1.91 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.20 5.93 -2.39 -0.01 1.18 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.15 0.85 7.94 -2.38 -0.02 0.84 16 38 H 0.12 1.02 7.69 -2.39 -0.02 1.01 16 39 H 0.45 6.58 8.18 -92.71 -0.76 5.82 16 40 H 0.44 3.86 8.96 -92.71 -0.83 3.03 16 41 H 0.09 1.70 7.00 -2.39 -0.02 1.68 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.00 361.73 -2.04 -75.05 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -1.16 Total: 25.22 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.45 Total: 17.87 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -9.20 Total: -130.12 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.17 Total: -35.35 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -73.00 -2.04 -75.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205479669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.716 kcal (2) G-P(sol) polarization free energy of solvation -73.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds