Wall clock time and date at job start Tue Mar 31 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00096 * 2 1 4 4 H 1.48498 * 109.46875 * 269.99824 * 3 2 1 5 5 H 1.48496 * 109.47100 * 30.00290 * 3 2 1 6 6 H 1.48499 * 109.46830 * 149.99989 * 3 2 1 7 7 C 1.38817 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99641 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99789 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99724 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47150 * 179.97438 * 10 9 7 12 12 C 1.53346 * 109.41904 * 295.13157 * 11 10 9 13 13 C 1.53195 * 109.14901 * 178.67276 * 12 11 10 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34778 * 120.63255 * 126.34238 * 14 13 12 16 16 O 1.21279 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00023 * 179.97438 * 15 14 13 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 15 14 19 19 C 1.47314 * 126.68995 * 269.71085 * 18 17 15 20 20 C 1.51580 * 103.59502 * 179.97438 * 19 18 17 21 21 O 1.21237 * 127.15868 * 180.08239 * 20 19 18 22 22 N 1.34769 * 105.68382 * 0.33186 * 20 19 18 23 23 C 1.33793 * 111.64126 * 359.78277 * 22 20 19 24 24 O 1.21541 * 123.76512 * 180.02562 * 23 22 20 25 25 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 26 26 C 1.53034 * 109.46014 * 175.00023 * 11 10 9 27 27 H 0.97003 * 119.99660 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00572 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47353 * 60.00330 * 10 9 7 30 30 H 1.08997 * 109.47478 * 300.00087 * 10 9 7 31 31 H 1.09001 * 109.45799 * 55.03185 * 11 10 9 32 32 H 1.08997 * 109.68637 * 58.70485 * 12 11 10 33 33 H 1.09002 * 109.47277 * 298.50741 * 12 11 10 34 34 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 35 35 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 36 36 H 1.09001 * 109.47488 * 299.99559 * 17 15 14 37 37 H 1.09001 * 109.47269 * 59.99982 * 17 15 14 38 38 H 1.09007 * 110.59877 * 298.56243 * 19 18 17 39 39 H 1.08998 * 110.60201 * 61.50394 * 19 18 17 40 40 H 0.96996 * 124.17697 * 179.82063 * 22 20 19 41 41 H 1.08994 * 109.58580 * 173.39910 * 25 14 13 42 42 H 1.09006 * 109.57831 * 293.67403 * 25 14 13 43 43 H 1.08994 * 109.50232 * 61.43679 * 26 11 10 44 44 H 1.09007 * 109.52628 * 301.35340 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0024 12 6 6.0043 -1.4950 -1.3123 13 6 7.5052 -1.1884 -1.2929 14 7 8.2414 -2.4318 -1.0276 15 6 9.2256 -2.8370 -1.8545 16 8 9.5105 -2.1734 -2.8289 17 6 9.9719 -4.1145 -1.5684 18 7 10.9838 -4.3316 -2.6053 19 6 10.8064 -5.0705 -3.8673 20 6 12.1646 -4.9703 -4.5328 21 8 12.4913 -5.4348 -5.6040 22 7 12.9351 -4.2622 -3.6836 23 6 12.2581 -3.9009 -2.5876 24 8 12.7404 -3.2552 -1.6779 25 6 7.8847 -3.2250 0.1567 26 6 6.3803 -3.5115 0.1234 27 1 -0.4850 0.8401 -0.0004 28 1 3.8647 -0.3622 -0.0014 29 1 3.8484 -3.0427 -0.8908 30 1 3.8490 -3.0424 0.8891 31 1 5.8663 -1.5456 0.8394 32 1 5.4443 -0.5655 -1.4138 33 1 5.7778 -2.1505 -2.1532 34 1 7.7197 -0.4622 -0.5088 35 1 7.8078 -0.7835 -2.2586 36 1 10.4588 -4.0409 -0.5959 37 1 9.2724 -4.9504 -1.5622 38 1 10.5512 -6.1117 -3.6695 39 1 10.0422 -4.5980 -4.4843 40 1 13.8653 -4.0413 -3.8470 41 1 8.4361 -4.1652 0.1463 42 1 8.1326 -2.6660 1.0590 43 1 6.1500 -4.1480 -0.7309 44 1 6.0857 -4.0167 1.0433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206614482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:27 Heat of formation + Delta-G solvation = -56.321667 kcal Electronic energy + Delta-G solvation = -27512.519019 eV Core-core repulsion = 23466.423224 eV Total energy + Delta-G solvation = -4046.095795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.69245 -40.42980 -39.05452 -37.96339 -36.58058 -35.22644 -34.94941 -32.97652 -31.52284 -30.94751 -29.71378 -27.66174 -26.76104 -23.86101 -23.54128 -22.78068 -22.09520 -21.54145 -20.41199 -19.27050 -18.66311 -18.11432 -17.56216 -17.13681 -16.91921 -16.32126 -16.21301 -15.63491 -15.15777 -14.74373 -14.65288 -14.57413 -14.51501 -14.25885 -14.01913 -13.82105 -13.62127 -13.38800 -12.93969 -12.75039 -12.53485 -12.36159 -12.01877 -11.52250 -11.48991 -11.31508 -10.93738 -10.82500 -10.77509 -10.63725 -10.59770 -10.41685 -10.34529 -10.10943 -9.62233 -9.40941 -8.93329 -8.85601 -7.26592 -5.80130 -3.15722 1.14147 1.61725 2.26748 2.44388 2.53406 2.84396 3.33968 3.36355 3.42761 3.55896 4.04465 4.16103 4.46125 4.53988 4.55793 4.67482 4.68041 4.74390 4.84241 5.02062 5.09526 5.16789 5.20505 5.38340 5.51135 5.53699 5.57352 5.66292 5.72421 5.73956 5.86604 5.90462 6.04591 6.12674 6.29165 6.43308 6.50477 6.61036 6.72604 6.86847 7.10220 7.61878 7.84164 7.95931 8.38959 9.17974 9.90320 10.09812 11.38322 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.027461 B = 0.002296 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.395712 B =12190.665950 C =12222.588862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.163 3.837 11 C -0.099 4.099 12 C -0.125 4.125 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.494 3.506 16 O -0.534 6.534 17 C 0.134 3.866 18 N -0.609 5.609 19 C 0.063 3.937 20 C 0.530 3.470 21 O -0.471 6.471 22 N -0.678 5.678 23 C 0.708 3.292 24 O -0.539 6.539 25 C 0.105 3.895 26 C -0.126 4.126 27 H 0.260 0.740 28 H 0.360 0.640 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.433 0.567 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.897 -13.297 -2.846 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.036 3.964 11 C -0.118 4.118 12 C -0.163 4.163 13 C -0.012 4.012 14 N -0.339 5.339 15 C 0.280 3.720 16 O -0.410 6.410 17 C 0.009 3.991 18 N -0.347 5.347 19 C -0.063 4.063 20 C 0.316 3.684 21 O -0.341 6.341 22 N -0.349 5.349 23 C 0.409 3.591 24 O -0.412 6.412 25 C -0.018 4.018 26 C -0.165 4.165 27 H 0.070 0.930 28 H 0.193 0.807 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.275 0.725 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 25.048 -12.939 -3.351 28.391 hybrid contribution 0.739 1.430 -0.006 1.609 sum 25.786 -11.509 -3.357 28.437 Atomic orbital electron populations 1.69702 1.05115 1.25841 1.57540 1.24685 0.95245 0.97221 1.02053 0.86561 0.79209 0.85011 0.77821 1.21020 1.21708 1.20344 1.19051 0.80677 0.94694 1.43028 0.89275 1.42725 1.04024 1.02234 1.91164 1.20638 0.87926 0.89295 0.98554 1.21427 0.96614 0.96048 0.97736 1.21993 0.93846 1.02251 0.98235 1.21718 0.91703 0.84980 1.02777 1.48154 1.34927 1.24874 1.25961 1.21036 0.80324 0.87593 0.83083 1.90720 1.65758 1.56245 1.28274 1.21235 0.89966 0.96951 0.90959 1.46954 1.10064 1.56609 1.21098 1.22574 0.97345 1.00435 0.85906 1.20774 0.87525 0.76241 0.83833 1.90874 1.78073 1.46153 1.18982 1.44305 1.16894 1.53157 1.20499 1.15737 0.81713 0.79407 0.82236 1.91038 1.71719 1.41683 1.36794 1.21869 0.96751 0.95349 0.87840 1.21903 0.93236 0.98207 1.03159 0.93040 0.80672 0.95598 0.95538 0.90939 0.90046 0.91372 0.91384 0.89136 0.86051 0.86061 0.85509 0.85497 0.72475 0.90016 0.90681 0.91180 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 21.73 27.74 -169.99 -4.71 17.01 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.76 -17.11 5.12 -59.91 -0.31 -17.42 16 10 C 0.16 2.85 5.65 -4.04 -0.02 2.83 16 11 C -0.10 -1.27 2.19 -90.42 -0.20 -1.46 16 12 C -0.13 -1.62 5.27 -26.45 -0.14 -1.76 16 13 C 0.11 1.27 6.42 -3.71 -0.02 1.25 16 14 N -0.60 -5.82 2.97 -172.77 -0.51 -6.33 16 15 C 0.49 5.07 7.77 -10.99 -0.09 4.98 16 16 O -0.53 -7.69 15.84 5.56 0.09 -7.60 16 17 C 0.13 0.82 4.97 -5.19 -0.03 0.79 16 18 N -0.61 -4.45 2.51 -181.39 -0.45 -4.90 16 19 C 0.06 0.32 7.66 -4.32 -0.03 0.28 16 20 C 0.53 3.83 8.81 -10.56 -0.09 3.74 16 21 O -0.47 -4.76 18.02 5.59 0.10 -4.65 16 22 N -0.68 -4.90 5.70 -15.79 -0.09 -4.99 16 23 C 0.71 6.77 8.68 -88.03 -0.76 6.00 16 24 O -0.54 -7.10 17.71 5.33 0.09 -7.00 16 25 C 0.10 0.71 6.34 -3.71 -0.02 0.69 16 26 C -0.13 -1.09 5.36 -26.62 -0.14 -1.24 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.36 7.95 4.71 -40.82 -0.19 7.76 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.21 7.16 -51.93 -0.37 0.84 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 36 H 0.12 0.63 7.83 -51.93 -0.41 0.23 16 37 H 0.12 0.28 7.69 -51.93 -0.40 -0.12 16 38 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.43 2.35 8.96 -40.82 -0.37 1.99 16 41 H 0.08 0.29 5.93 -51.93 -0.31 -0.02 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -38.36 362.51 -7.59 -45.95 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.23 Total: 3.59 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -1.81 Total: 9.18 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.59 Total: -61.94 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.28 Total: -19.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.36 -7.59 -45.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206614482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.373 kcal (2) G-P(sol) polarization free energy of solvation -38.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds