Wall clock time and date at job start Tue Mar 31 2020 05:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99982 * 3 2 1 5 5 H 1.48505 * 109.47151 * 29.99626 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00160 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 H 1.09008 * 110.42476 * 327.52770 * 17 16 14 19 19 C 1.54524 * 110.48207 * 205.00492 * 17 16 14 20 20 C 1.53409 * 103.02223 * 220.66770 * 19 17 16 21 21 H 1.09006 * 110.26779 * 132.92377 * 20 19 17 22 22 C 1.53048 * 111.42291 * 255.70626 * 20 19 17 23 23 C 1.53259 * 108.48914 * 170.98130 * 22 20 19 24 24 C 1.52815 * 110.77274 * 298.01338 * 23 22 20 25 25 C 1.53733 * 109.92404 * 61.54993 * 24 23 22 26 26 N 1.47477 * 106.68125 * 12.48338 * 20 19 17 27 27 C 1.33688 * 111.45853 * 1.59240 * 26 20 19 28 28 O 1.21284 * 125.30967 * 164.25566 * 27 26 20 29 29 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 32 32 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 33 33 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 34 34 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 35 35 H 1.08995 * 110.70886 * 339.05163 * 19 17 16 36 36 H 1.09001 * 110.70722 * 102.11647 * 19 17 16 37 37 H 1.09004 * 109.63679 * 290.68227 * 22 20 19 38 38 H 1.09000 * 109.63405 * 51.08480 * 22 20 19 39 39 H 1.09000 * 109.22070 * 58.35221 * 23 22 20 40 40 H 1.09004 * 109.21635 * 177.72387 * 23 22 20 41 41 H 1.09008 * 109.39117 * 181.68584 * 24 23 22 42 42 H 1.09000 * 109.39792 * 301.49957 * 24 23 22 43 43 H 1.09009 * 110.03986 * 66.48656 * 25 24 23 44 44 H 1.09000 * 110.03974 * 187.98244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2105 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1962 -5.9763 -0.0016 14 6 1.7470 -7.2471 -0.0017 15 8 0.5516 -7.4693 -0.0018 16 7 2.6228 -8.2714 0.0035 17 6 2.1346 -9.6527 0.0095 18 1 1.1950 -9.7216 0.5577 19 6 3.1910 -10.5968 0.6262 20 6 3.1232 -11.8315 -0.2817 21 1 4.1271 -12.1451 -0.5682 22 6 2.3813 -12.9849 0.3976 23 6 2.1540 -14.0928 -0.6367 24 6 1.2801 -13.5908 -1.7855 25 6 1.9803 -12.4276 -2.5067 26 7 2.3367 -11.4426 -1.4671 27 6 1.9634 -10.1603 -1.4072 28 8 1.5521 -9.5055 -2.3416 29 1 -0.4850 0.8399 -0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6177 -4.9205 -0.8913 32 1 0.6171 -4.9209 0.8886 33 1 3.1498 -5.7991 -0.0012 34 1 3.5765 -8.0941 0.0033 35 1 4.1818 -10.1442 0.5879 36 1 2.9259 -10.8544 1.6517 37 1 2.9807 -13.3710 1.2221 38 1 1.4224 -12.6310 0.7763 39 1 3.1164 -14.4167 -1.0330 40 1 1.6618 -14.9378 -0.1551 41 1 1.1083 -14.4035 -2.4914 42 1 0.3245 -13.2469 -1.3898 43 1 2.8806 -12.7856 -3.0063 44 1 1.3035 -11.9764 -3.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227976601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:10 Heat of formation + Delta-G solvation = -97.953958 kcal Electronic energy + Delta-G solvation = -27167.378753 eV Core-core repulsion = 23119.477646 eV Total energy + Delta-G solvation = -4047.901107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31409 -39.58972 -38.16080 -37.53223 -35.68248 -34.35084 -33.63450 -33.43743 -32.45723 -31.32908 -29.05330 -27.38903 -26.77302 -24.48342 -23.63937 -22.27181 -21.40006 -20.66765 -19.60659 -19.51950 -18.48196 -17.95254 -16.98299 -16.56787 -16.19787 -15.51478 -15.30921 -15.19025 -15.00894 -14.76181 -14.50143 -14.38552 -14.11090 -13.91801 -13.70986 -13.56096 -13.49689 -13.40971 -12.90469 -12.42680 -12.12875 -12.08185 -11.91257 -11.59601 -11.47370 -11.34762 -11.20305 -11.10117 -11.08729 -10.43067 -10.36946 -10.28455 -9.99728 -9.59642 -9.07412 -8.90744 -8.57770 -8.55351 -8.05716 -6.47316 -3.89261 2.27727 2.57140 2.97590 3.14711 3.24633 3.30142 3.42969 3.79745 3.96987 4.06028 4.12919 4.24841 4.32990 4.44330 4.46795 4.55141 4.72056 4.82321 4.87341 4.95607 5.03537 5.21429 5.21706 5.27438 5.35213 5.41425 5.43613 5.51516 5.57505 5.61623 5.84974 5.97832 6.07805 6.13306 6.19336 6.40710 6.80877 6.91448 7.05713 7.49834 7.96679 8.04053 8.25540 8.49752 8.83611 9.08710 9.44108 9.92129 10.69656 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.040715 B = 0.002011 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.548411 B =13922.634874 C =14106.886493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.722 5.722 14 C 0.710 3.290 15 O -0.589 6.589 16 N -0.733 5.733 17 C 0.138 3.862 18 H 0.127 0.873 19 C -0.134 4.134 20 C 0.133 3.867 21 H 0.087 0.913 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.138 4.138 25 C 0.128 3.872 26 N -0.625 5.625 27 C 0.508 3.492 28 O -0.504 6.504 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.400 0.600 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 -29.332 1.627 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.216 3.784 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.410 3.590 15 O -0.467 6.467 16 N -0.389 5.389 17 C 0.028 3.972 18 H 0.145 0.855 19 C -0.172 4.172 20 C 0.028 3.972 21 H 0.105 0.895 22 C -0.170 4.170 23 C -0.156 4.156 24 C -0.177 4.177 25 C 0.007 3.993 26 N -0.362 5.362 27 C 0.293 3.707 28 O -0.376 6.376 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.244 0.756 34 H 0.235 0.765 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.781 -28.947 1.027 29.357 hybrid contribution 0.622 0.913 -0.064 1.106 sum 5.402 -28.034 0.963 28.566 Atomic orbital electron populations 1.69616 1.05988 1.28472 1.49420 1.25329 0.95675 0.99918 0.96889 0.85810 0.79188 0.80529 0.78460 1.20297 1.20829 1.19355 1.19722 0.93442 0.82014 1.48179 0.87702 1.41786 1.09507 1.04436 1.62737 1.19769 0.88282 0.85019 0.85368 1.90486 1.13766 1.86893 1.57351 1.20791 0.91201 0.84744 1.03215 1.44701 1.11219 1.03191 1.78787 1.15761 0.85127 0.80532 0.77575 1.90910 1.13944 1.84060 1.57802 1.44739 1.09138 1.03644 1.81377 1.21416 1.00345 0.81180 0.94248 0.85531 1.22661 0.99984 0.94330 1.00259 1.21679 0.95483 0.94669 0.85344 0.89465 1.22068 1.01394 0.95389 0.98166 1.21462 1.00220 0.97879 0.96058 1.22019 0.99519 0.97942 0.98180 1.21796 0.99786 0.88169 0.89552 1.48568 1.54223 1.10172 1.23192 1.21211 0.76847 0.81526 0.91117 1.90762 1.44885 1.60223 1.41737 0.91621 0.76993 0.89941 0.89962 0.75630 0.76547 0.88939 0.88086 0.90381 0.90904 0.91754 0.91491 0.90638 0.91330 0.91078 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.31 13.05 55.50 0.72 -23.59 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.43 10.18 7.85 -10.99 -0.09 10.09 16 11 O -0.60 -15.62 15.24 5.54 0.08 -15.54 16 12 C 0.13 2.53 6.15 -5.19 -0.03 2.50 16 13 N -0.72 -12.87 5.53 -66.41 -0.37 -13.24 16 14 C 0.71 12.38 8.57 -86.92 -0.74 11.64 16 15 O -0.59 -12.33 15.99 5.28 0.08 -12.25 16 16 N -0.73 -9.31 5.10 -58.65 -0.30 -9.61 16 17 C 0.14 1.51 3.33 -67.91 -0.23 1.28 16 18 H 0.13 1.51 7.55 -51.92 -0.39 1.12 16 19 C -0.13 -0.77 6.43 -25.72 -0.17 -0.93 16 20 C 0.13 0.75 3.58 -67.16 -0.24 0.51 16 21 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 22 C -0.13 -0.57 5.37 -26.57 -0.14 -0.71 16 23 C -0.12 -0.50 5.77 -26.69 -0.15 -0.65 16 24 C -0.14 -0.75 6.06 -26.44 -0.16 -0.91 16 25 C 0.13 0.96 6.96 -3.07 -0.02 0.94 16 26 N -0.62 -5.70 2.94 -163.78 -0.48 -6.18 16 27 C 0.51 6.76 7.70 -11.10 -0.09 6.68 16 28 O -0.50 -9.38 17.74 5.55 0.10 -9.28 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.40 9.72 7.90 -40.82 -0.32 9.40 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.41 6.93 7.45 -40.82 -0.30 6.63 16 34 H 0.40 3.95 8.39 -40.82 -0.34 3.61 16 35 H 0.09 0.41 7.75 -51.93 -0.40 0.01 16 36 H 0.10 0.40 7.83 -51.93 -0.41 0.00 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.09 0.81 7.96 -51.93 -0.41 0.39 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -36.65 366.43 -8.34 -44.98 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -6.32 Total: 14.97 kcal Atomic # 6 Polarization: 24.72 SS G_CDS: -2.30 Total: 22.43 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -0.48 Total: -66.66 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: 0.27 Total: -37.07 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.65 -8.34 -44.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227976601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.972 kcal (2) G-P(sol) polarization free energy of solvation -36.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds