Wall clock time and date at job start Tue Mar 31 2020 05:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99982 * 3 2 1 5 5 H 1.48505 * 109.47151 * 29.99626 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00160 * 3 2 1 7 7 C 1.38947 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 H 1.09008 * 110.42476 * 327.52770 * 17 16 14 19 19 C 1.54524 * 110.48207 * 205.00492 * 17 16 14 20 20 C 1.53409 * 103.02223 * 220.66770 * 19 17 16 21 21 H 1.09006 * 110.26779 * 132.92377 * 20 19 17 22 22 C 1.53048 * 111.42291 * 255.70626 * 20 19 17 23 23 C 1.53259 * 108.48914 * 170.98130 * 22 20 19 24 24 C 1.52815 * 110.77274 * 298.01338 * 23 22 20 25 25 C 1.53733 * 109.92404 * 61.54993 * 24 23 22 26 26 N 1.47477 * 106.68125 * 12.48338 * 20 19 17 27 27 C 1.33688 * 111.45853 * 1.59240 * 26 20 19 28 28 O 1.21284 * 125.30967 * 164.25566 * 27 26 20 29 29 H 0.96990 * 120.00229 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 32 32 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 33 33 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 34 34 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 35 35 H 1.08995 * 110.70886 * 339.05163 * 19 17 16 36 36 H 1.09001 * 110.70722 * 102.11647 * 19 17 16 37 37 H 1.09004 * 109.63679 * 290.68227 * 22 20 19 38 38 H 1.09000 * 109.63405 * 51.08480 * 22 20 19 39 39 H 1.09000 * 109.22070 * 58.35221 * 23 22 20 40 40 H 1.09004 * 109.21635 * 177.72387 * 23 22 20 41 41 H 1.09008 * 109.39117 * 181.68584 * 24 23 22 42 42 H 1.09000 * 109.39792 * 301.49957 * 24 23 22 43 43 H 1.09009 * 110.03986 * 66.48656 * 25 24 23 44 44 H 1.09000 * 110.03974 * 187.98244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2105 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1962 -5.9763 -0.0016 14 6 1.7470 -7.2471 -0.0017 15 8 0.5516 -7.4693 -0.0018 16 7 2.6228 -8.2714 0.0035 17 6 2.1346 -9.6527 0.0095 18 1 1.1950 -9.7216 0.5577 19 6 3.1910 -10.5968 0.6262 20 6 3.1232 -11.8315 -0.2817 21 1 4.1271 -12.1451 -0.5682 22 6 2.3813 -12.9849 0.3976 23 6 2.1540 -14.0928 -0.6367 24 6 1.2801 -13.5908 -1.7855 25 6 1.9803 -12.4276 -2.5067 26 7 2.3367 -11.4426 -1.4671 27 6 1.9634 -10.1603 -1.4072 28 8 1.5521 -9.5055 -2.3416 29 1 -0.4850 0.8399 -0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6177 -4.9205 -0.8913 32 1 0.6171 -4.9209 0.8886 33 1 3.1498 -5.7991 -0.0012 34 1 3.5765 -8.0941 0.0033 35 1 4.1818 -10.1442 0.5879 36 1 2.9259 -10.8544 1.6517 37 1 2.9807 -13.3710 1.2221 38 1 1.4224 -12.6310 0.7763 39 1 3.1164 -14.4167 -1.0330 40 1 1.6618 -14.9378 -0.1551 41 1 1.1083 -14.4035 -2.4914 42 1 0.3245 -13.2469 -1.3898 43 1 2.8806 -12.7856 -3.0063 44 1 1.3035 -11.9764 -3.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227976601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:09 Heat of formation + Delta-G solvation = -127.557520 kcal Electronic energy + Delta-G solvation = -27168.662459 eV Core-core repulsion = 23119.477646 eV Total energy + Delta-G solvation = -4049.184814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16046 -40.97701 -39.96469 -38.45813 -36.62728 -36.20327 -35.29294 -34.32677 -33.37598 -33.08729 -30.06025 -28.62275 -27.64297 -26.32431 -24.30991 -22.83000 -22.41894 -21.65400 -21.36931 -20.29327 -20.15748 -19.69716 -18.02558 -17.50374 -17.43045 -17.06610 -16.70751 -16.50688 -16.29670 -15.81852 -15.72263 -15.45681 -15.25215 -15.05569 -14.95883 -14.66562 -14.40698 -14.14842 -13.96712 -13.63823 -13.54565 -13.47562 -13.00325 -12.90913 -12.66003 -12.45695 -12.12050 -11.92982 -11.90752 -11.63597 -11.60315 -11.57167 -11.44969 -11.39169 -10.56524 -10.36470 -10.10429 -9.84668 -9.63964 -8.50807 -6.01351 1.21764 1.36579 1.42763 1.55585 1.63387 1.88516 1.95398 2.16182 2.29097 3.00921 3.16040 3.25457 3.32343 3.48305 3.77875 3.83324 3.97141 4.02917 4.18542 4.24113 4.26325 4.35968 4.41666 4.44409 4.59825 4.65739 4.77476 4.90682 4.94470 5.04808 5.11434 5.19911 5.23980 5.28678 5.33259 5.38617 5.49090 5.61684 5.85372 5.92308 6.11003 6.47548 6.96339 7.02916 7.10176 7.41419 7.49692 7.93478 8.66203 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.040715 B = 0.002011 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.548411 B =13922.634874 C =14106.886493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.013 4.013 3 Si 1.000 3.000 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.623 6.623 12 C 0.142 3.858 13 N -0.721 5.721 14 C 0.708 3.292 15 O -0.628 6.628 16 N -0.716 5.716 17 C 0.133 3.867 18 H 0.113 0.887 19 C -0.119 4.119 20 C 0.128 3.872 21 H 0.114 0.886 22 C -0.130 4.130 23 C -0.117 4.117 24 C -0.133 4.133 25 C 0.120 3.880 26 N -0.616 5.616 27 C 0.494 3.506 28 O -0.574 6.574 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.411 0.589 34 H 0.415 0.585 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 -31.182 2.871 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.823 3.177 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.511 6.511 12 C 0.013 3.987 13 N -0.379 5.379 14 C 0.407 3.593 15 O -0.509 6.509 16 N -0.372 5.372 17 C 0.023 3.977 18 H 0.131 0.869 19 C -0.157 4.157 20 C 0.026 3.974 21 H 0.131 0.869 22 C -0.168 4.168 23 C -0.155 4.155 24 C -0.171 4.171 25 C -0.001 4.001 26 N -0.351 5.351 27 C 0.280 3.720 28 O -0.452 6.452 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.249 0.751 34 H 0.253 0.747 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.620 -30.893 2.301 31.678 hybrid contribution 0.067 1.339 -0.479 1.424 sum 6.687 -29.553 1.823 30.355 Atomic orbital electron populations 1.69688 1.07057 1.29656 1.49260 1.26179 0.96578 1.02802 0.95784 0.84833 0.77926 0.76322 0.78669 1.19666 1.19584 1.19284 1.19754 0.93005 0.83468 1.50395 0.89448 1.41839 1.09601 1.04602 1.63425 1.20347 0.88102 0.85805 0.83558 1.90459 1.15050 1.87532 1.58019 1.20579 0.91038 0.83201 1.03880 1.44610 1.11033 1.03090 1.79148 1.15938 0.85147 0.80929 0.77253 1.90881 1.15833 1.84597 1.59550 1.44637 1.09374 1.03492 1.79714 1.21645 1.01898 0.80862 0.93298 0.86904 1.22766 0.99129 0.92619 1.01166 1.22059 0.96339 0.95106 0.83930 0.86851 1.22093 1.01109 0.94717 0.98835 1.21481 1.00586 0.98048 0.95346 1.21988 0.98759 0.97318 0.99037 1.21979 1.00457 0.88306 0.89345 1.48739 1.52948 1.09026 1.24387 1.21675 0.76278 0.82724 0.91301 1.90715 1.48396 1.62212 1.43906 0.91063 0.76729 0.89827 0.88669 0.75106 0.74722 0.86817 0.85449 0.87569 0.92107 0.90350 0.90435 0.89065 0.93118 0.89015 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 9 N -0.56 -29.04 5.29 -306.98 -1.62 -30.66 16 10 C 0.43 20.91 7.85 87.66 0.69 21.60 16 11 O -0.62 -32.94 15.24 -3.08 -0.05 -32.99 16 12 C 0.14 5.63 6.15 85.63 0.53 6.16 16 13 N -0.72 -25.84 5.53 -482.29 -2.67 -28.50 16 14 C 0.71 24.91 8.57 179.06 1.53 26.44 16 15 O -0.63 -26.98 15.99 -4.01 -0.06 -27.04 16 16 N -0.72 -17.81 5.10 -457.74 -2.34 -20.15 16 17 C 0.13 2.81 3.33 45.00 0.15 2.96 16 18 H 0.11 2.73 7.55 -2.38 -0.02 2.71 16 19 C -0.12 -0.98 6.43 31.25 0.20 -0.78 16 20 C 0.13 1.04 3.58 44.96 0.16 1.20 16 21 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 22 C -0.13 -0.66 5.37 30.70 0.16 -0.49 16 23 C -0.12 -0.60 5.77 30.62 0.18 -0.42 16 24 C -0.13 -1.26 6.06 30.78 0.19 -1.08 16 25 C 0.12 1.75 6.96 86.42 0.60 2.35 16 26 N -0.62 -10.71 2.94 -791.07 -2.32 -13.04 16 27 C 0.49 13.46 7.70 88.07 0.68 14.13 16 28 O -0.57 -22.74 17.74 -3.04 -0.05 -22.79 16 29 H 0.28 14.19 8.31 -92.72 -0.77 13.42 16 30 H 0.40 20.00 7.90 -92.71 -0.73 19.26 16 31 H 0.08 3.33 8.14 -2.39 -0.02 3.32 16 32 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.41 13.98 7.45 -92.71 -0.69 13.29 16 34 H 0.42 7.61 8.39 -92.71 -0.78 6.84 16 35 H 0.11 0.53 7.75 -2.39 -0.02 0.51 16 36 H 0.13 0.47 7.83 -2.39 -0.02 0.45 16 37 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 41 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 43 H 0.09 0.96 8.14 -2.38 -0.02 0.95 16 44 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 Total: -1.00 -82.96 366.43 -1.60 -84.56 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -1.14 Total: 41.91 kcal Atomic # 6 Polarization: 47.35 SS G_CDS: 6.35 Total: 53.70 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -8.67 Total: -141.83 kcal Atomic # 8 Polarization: -82.65 SS G_CDS: -0.17 Total: -82.82 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -82.96 -1.60 -84.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227976601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.998 kcal (2) G-P(sol) polarization free energy of solvation -82.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds