Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 119.99703 * 2 1 4 4 H 1.48500 * 109.47516 * 270.00346 * 3 2 1 5 5 H 1.48507 * 109.47265 * 30.00307 * 3 2 1 6 6 H 1.48498 * 109.47158 * 149.99877 * 3 2 1 7 7 C 1.38947 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00174 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00060 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00048 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99493 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.46764 * 180.02562 * 12 10 9 14 14 C 1.34784 * 119.99774 * 180.02562 * 13 12 10 15 15 O 1.21587 * 119.99965 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99483 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99333 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.54653 * 32.38588 * 17 16 14 19 19 C 1.54636 * 110.48421 * 155.00274 * 17 16 14 20 20 C 1.54066 * 101.74671 * 93.96876 * 19 17 16 21 21 H 1.08996 * 110.57235 * 265.37405 * 20 19 17 22 22 C 1.53127 * 109.79217 * 142.12652 * 20 19 17 23 23 C 1.53140 * 108.36253 * 190.86585 * 22 20 19 24 24 C 1.52370 * 110.25161 * 64.87035 * 23 22 20 25 25 C 1.52284 * 111.62870 * 300.95163 * 24 23 22 26 26 N 1.46664 * 110.81326 * 42.52658 * 25 24 23 27 27 C 1.34763 * 124.85048 * 140.33407 * 26 25 24 28 28 O 1.21280 * 124.80683 * 1.28738 * 27 26 25 29 29 H 0.96992 * 120.00628 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99809 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47504 * 60.00433 * 12 10 9 32 32 H 1.09000 * 109.47820 * 300.00116 * 12 10 9 33 33 H 0.96997 * 119.99854 * 359.97438 * 13 12 10 34 34 H 0.97001 * 120.00388 * 0.02562 * 16 14 13 35 35 H 1.09004 * 110.97192 * 335.85618 * 19 17 16 36 36 H 1.09000 * 110.97359 * 212.08763 * 19 17 16 37 37 H 1.08999 * 109.68614 * 310.58408 * 22 20 19 38 38 H 1.09007 * 109.68349 * 71.15342 * 22 20 19 39 39 H 1.08990 * 109.34141 * 304.62546 * 23 22 20 40 40 H 1.09008 * 109.20723 * 185.02314 * 23 22 20 41 41 H 1.09004 * 109.05043 * 180.39717 * 24 23 22 42 42 H 1.09001 * 108.99548 * 61.46743 * 24 23 22 43 43 H 1.09005 * 109.20393 * 282.18395 * 25 24 23 44 44 H 1.09001 * 109.21405 * 162.87455 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0004 14 6 1.7468 -7.2472 -0.0013 15 8 0.5514 -7.4693 -0.0022 16 7 2.6228 -8.2715 -0.0011 17 6 2.1344 -9.6527 -0.0015 18 1 1.1945 -9.7260 -0.5485 19 6 3.1920 -10.6005 -0.6134 20 6 3.9418 -11.0860 0.6419 21 1 4.8257 -10.4739 0.8209 22 6 4.3097 -12.5643 0.4867 23 6 4.8020 -13.0837 1.8406 24 6 3.6720 -13.0474 2.8620 25 6 3.1283 -11.6371 3.0479 26 7 2.9893 -10.9577 1.7555 27 6 1.9629 -10.1537 1.4146 28 8 1.0338 -9.8715 2.1411 29 1 -0.4851 0.8399 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6177 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8886 33 1 3.1497 -5.7991 0.0000 34 1 3.5764 -8.0942 0.0000 35 1 3.8609 -10.0588 -1.2822 36 1 2.7165 -11.4338 -1.1306 37 1 3.4323 -13.1301 0.1734 38 1 5.1001 -12.6699 -0.2565 39 1 5.6242 -12.4590 2.1895 40 1 5.1518 -14.1097 1.7255 41 1 4.0450 -13.4138 3.8185 42 1 2.8657 -13.6976 2.5223 43 1 3.8117 -11.0698 3.6797 44 1 2.1532 -11.6895 3.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227976609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = -100.922635 kcal Electronic energy + Delta-G solvation = -27216.302145 eV Core-core repulsion = 23168.272306 eV Total energy + Delta-G solvation = -4048.029838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30853 -39.59964 -38.17633 -37.56684 -35.82950 -34.38147 -33.64748 -33.37726 -32.55240 -31.34910 -29.22051 -27.38817 -26.72260 -24.48254 -23.62866 -22.28731 -21.44268 -20.71361 -19.57970 -19.48882 -18.48324 -17.95907 -17.19448 -16.68434 -15.88187 -15.55760 -15.42052 -15.26520 -15.06615 -14.69559 -14.44414 -14.36085 -14.25835 -14.01966 -13.78121 -13.64012 -13.51542 -13.40981 -12.87793 -12.23708 -12.18994 -12.14775 -11.94566 -11.61189 -11.59060 -11.33263 -11.16485 -11.11093 -11.00731 -10.44509 -10.39958 -10.30130 -10.01797 -9.61462 -9.08303 -8.94552 -8.61495 -8.60235 -8.07656 -6.48984 -3.91094 2.15664 2.63115 3.02631 3.13241 3.23489 3.28992 3.38381 3.77448 3.94185 4.00018 4.10445 4.21481 4.36773 4.41518 4.43678 4.56427 4.68484 4.76640 4.92842 4.93775 5.08554 5.19669 5.23302 5.30554 5.38506 5.41266 5.43110 5.49867 5.57028 5.61528 5.83375 5.95360 6.04806 6.10924 6.28472 6.34336 6.76369 6.85190 7.01069 7.48127 7.94738 8.02632 8.20365 8.47608 8.78820 9.06827 9.42097 9.89904 10.67921 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030433 B = 0.002089 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.819575 B =13399.768422 C =13557.848535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.430 3.570 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.722 5.722 14 C 0.705 3.295 15 O -0.581 6.581 16 N -0.732 5.732 17 C 0.140 3.860 18 H 0.124 0.876 19 C -0.138 4.138 20 C 0.129 3.871 21 H 0.086 0.914 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.133 4.133 25 C 0.128 3.872 26 N -0.616 5.616 27 C 0.503 3.497 28 O -0.507 6.507 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.406 0.594 34 H 0.400 0.600 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 -27.063 0.112 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.486 6.486 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.405 3.595 15 O -0.458 6.458 16 N -0.390 5.390 17 C 0.030 3.970 18 H 0.142 0.858 19 C -0.177 4.177 20 C 0.025 3.975 21 H 0.104 0.896 22 C -0.165 4.165 23 C -0.158 4.158 24 C -0.171 4.171 25 C 0.006 3.994 26 N -0.353 5.353 27 C 0.287 3.713 28 O -0.379 6.379 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.234 0.766 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.616 -26.910 0.613 28.263 hybrid contribution 0.729 0.985 0.118 1.231 sum 9.346 -25.926 0.731 27.568 Atomic orbital electron populations 1.69616 1.05993 1.28511 1.49311 1.25333 0.95678 0.99936 0.96855 0.85807 0.79202 0.80517 0.78448 1.20284 1.20817 1.19354 1.19719 0.93434 0.82000 1.48249 0.87702 1.41792 1.09525 1.04444 1.62647 1.19752 0.88273 0.85006 0.85452 1.90481 1.13760 1.86884 1.57432 1.20803 0.91185 0.84725 1.03281 1.44722 1.11238 1.03166 1.78798 1.15834 0.85212 0.80564 0.77934 1.90952 1.13760 1.83907 1.57213 1.44754 1.09156 1.03536 1.81596 1.21319 1.00532 0.81264 0.93919 0.85791 1.23010 0.98023 0.99740 0.96895 1.21815 0.92557 0.97241 0.85854 0.89608 1.21987 1.02080 0.94518 0.97939 1.21366 0.97972 1.01659 0.94786 1.21558 0.98847 0.96430 1.00240 1.21172 1.02287 0.92270 0.83654 1.48527 1.23939 1.48172 1.14697 1.21525 0.81383 0.78362 0.89987 1.90759 1.32616 1.57705 1.56803 0.91593 0.76978 0.89890 0.89933 0.75640 0.76569 0.88008 0.88205 0.90915 0.90214 0.91605 0.91362 0.90501 0.91558 0.91934 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 13.05 55.50 0.72 -23.44 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.84 5.29 -10.97 -0.06 -13.90 16 10 C 0.43 10.02 7.85 -10.99 -0.09 9.93 16 11 O -0.60 -15.39 15.24 5.55 0.08 -15.31 16 12 C 0.13 2.47 6.15 -5.19 -0.03 2.44 16 13 N -0.72 -12.47 5.53 -66.41 -0.37 -12.84 16 14 C 0.71 11.95 8.57 -86.91 -0.74 11.21 16 15 O -0.58 -12.12 15.99 5.29 0.08 -12.04 16 16 N -0.73 -8.84 5.10 -58.73 -0.30 -9.14 16 17 C 0.14 1.52 3.28 -67.98 -0.22 1.30 16 18 H 0.12 1.54 7.56 -51.93 -0.39 1.15 16 19 C -0.14 -0.78 6.28 -25.31 -0.16 -0.94 16 20 C 0.13 0.76 3.66 -66.98 -0.24 0.51 16 21 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 22 C -0.13 -0.53 5.37 -26.59 -0.14 -0.67 16 23 C -0.12 -0.51 5.81 -26.98 -0.16 -0.67 16 24 C -0.13 -0.71 5.98 -27.42 -0.16 -0.87 16 25 C 0.13 1.04 6.74 -4.32 -0.03 1.01 16 26 N -0.62 -5.76 3.15 -165.05 -0.52 -6.28 16 27 C 0.50 6.73 7.66 -10.75 -0.08 6.64 16 28 O -0.51 -9.44 17.51 5.56 0.10 -9.35 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.40 9.65 7.90 -40.82 -0.32 9.32 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.41 6.67 7.45 -40.82 -0.30 6.37 16 34 H 0.40 3.62 8.65 -40.82 -0.35 3.27 16 35 H 0.10 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.10 0.43 7.73 -51.93 -0.40 0.03 16 37 H 0.07 0.33 7.94 -51.93 -0.41 -0.08 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.24 8.14 -51.92 -0.42 -0.19 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.82 7.76 -51.93 -0.40 0.41 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -36.32 366.05 -8.39 -44.71 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -6.32 Total: 14.42 kcal Atomic # 6 Polarization: 24.26 SS G_CDS: -2.31 Total: 21.96 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -0.52 Total: -65.59 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: 0.27 Total: -36.69 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.32 -8.39 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227976609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.213 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds