Wall clock time and date at job start Tue Mar 31 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34642 * 117.00210 * 2 1 4 4 O 1.21514 * 119.99688 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00399 * 180.02562 * 3 2 1 6 6 C 1.46944 * 120.68512 * 359.97438 * 5 3 2 7 7 C 1.53189 * 108.84813 * 234.14654 * 6 5 3 8 8 C 1.53128 * 109.29113 * 304.82368 * 7 6 5 9 9 C 1.52436 * 109.66441 * 60.43536 * 8 7 6 10 10 C 1.53767 * 110.31419 * 177.94928 * 9 8 7 11 11 C 1.51438 * 103.36447 * 241.20693 * 10 9 8 12 12 O 1.21228 * 125.41750 * 180.02562 * 11 10 9 13 13 N 1.33960 * 109.17477 * 359.97438 * 11 10 9 14 14 C 1.46496 * 122.78891 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47421 * 90.02087 * 14 13 11 16 16 C 1.50706 * 109.46925 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00196 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99426 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47555 * 90.00165 * 20 18 16 22 22 H 1.48503 * 109.46814 * 210.00053 * 20 18 16 23 23 H 1.48496 * 109.47318 * 329.99545 * 20 18 16 24 24 C 1.34059 * 114.42525 * 0.25048 * 13 11 10 25 25 O 1.21234 * 125.49241 * 179.74637 * 24 13 11 26 26 C 1.47032 * 120.68273 * 180.02562 * 5 3 2 27 27 H 1.08999 * 109.47158 * 60.00671 * 1 2 3 28 28 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47219 * 300.00298 * 1 2 3 30 30 H 1.08996 * 109.57485 * 114.32813 * 6 5 3 31 31 H 1.09001 * 109.56996 * 353.95082 * 6 5 3 32 32 H 1.08998 * 109.49566 * 184.88147 * 7 6 5 33 33 H 1.08995 * 109.50418 * 64.77395 * 7 6 5 34 34 H 1.08999 * 109.44162 * 300.37388 * 8 7 6 35 35 H 1.08998 * 109.40081 * 180.47149 * 8 7 6 36 36 H 1.08995 * 110.64416 * 122.72846 * 10 9 8 37 37 H 1.09006 * 110.63349 * 359.67303 * 10 9 8 38 38 H 1.09004 * 109.46875 * 330.02290 * 14 13 11 39 39 H 1.09004 * 109.47522 * 210.02438 * 14 13 11 40 40 H 1.09000 * 109.46497 * 60.00401 * 15 14 13 41 41 H 1.09000 * 109.47312 * 300.00180 * 15 14 13 42 42 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.57382 * 7.46483 * 26 5 3 44 44 H 1.09005 * 109.56863 * 247.08836 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2241 0.0475 -0.0005 7 6 5.2056 0.1070 1.1741 8 6 6.0264 1.3965 1.0827 9 6 5.0963 2.6024 1.1481 10 6 5.9097 3.9067 1.1090 11 6 5.5719 4.5696 2.4280 12 8 6.0044 5.6359 2.8094 13 7 4.7184 3.7909 3.1059 14 6 4.1954 4.1491 4.4266 15 6 2.9014 4.9490 4.2630 16 6 2.3638 5.3181 5.6217 17 1 2.8924 5.0130 6.5127 18 6 1.1971 6.0452 5.7271 19 7 0.5537 6.4172 4.6421 20 14 0.5312 6.5032 7.4112 21 1 1.0929 7.8138 7.8261 22 1 -0.9496 6.5967 7.3492 23 1 0.9205 5.4633 8.3971 24 6 4.3871 2.6537 2.4780 25 8 3.6365 1.8047 2.9088 26 6 4.0921 2.5723 0.0000 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.7784 -0.0219 -0.9365 31 1 3.5769 -0.8227 0.1082 32 1 5.8737 -0.7533 1.1338 33 1 4.6513 0.0942 2.1125 34 1 6.5745 1.4117 0.1407 35 1 6.7313 1.4366 1.9132 36 1 5.5945 4.5312 0.2731 37 1 6.9768 3.6923 1.0487 38 1 4.9314 4.7533 4.9572 39 1 3.9921 3.2417 4.9954 40 1 2.1655 4.3449 3.7325 41 1 3.1046 5.8565 3.6943 42 1 -0.2668 6.9290 4.7163 43 1 3.3601 3.3686 0.1343 44 1 4.6154 2.7104 -0.9462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274319516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:16 Heat of formation + Delta-G solvation = -142.223967 kcal Electronic energy + Delta-G solvation = -29345.888992 eV Core-core repulsion = 25263.775443 eV Total energy + Delta-G solvation = -4082.113550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13579 -40.39770 -38.63160 -37.62864 -36.18149 -35.57702 -34.44624 -32.99881 -32.20702 -30.12065 -28.23407 -27.46582 -25.55535 -25.28327 -24.13677 -22.42540 -21.79465 -21.18240 -20.30955 -18.67780 -18.02170 -17.11799 -16.96789 -16.49918 -16.25523 -16.02625 -15.94655 -15.03001 -14.77413 -14.51387 -14.46144 -14.33811 -14.02762 -13.75769 -13.73103 -13.35025 -12.95960 -12.88552 -12.70482 -12.66167 -12.30855 -12.15931 -11.94245 -11.54561 -11.35659 -11.23283 -10.98704 -10.93574 -10.79252 -10.71471 -10.43198 -10.21431 -10.08454 -9.94160 -9.59925 -9.20747 -8.89389 -8.83324 -8.36053 -5.99900 -4.04338 1.78637 2.07429 2.88433 2.89735 3.07934 3.34070 3.39541 3.43189 3.77409 4.01049 4.17767 4.29538 4.37655 4.46931 4.73346 4.77125 4.83914 5.13783 5.14282 5.18582 5.24615 5.27869 5.34632 5.36126 5.42786 5.49692 5.52285 5.56033 5.64420 5.77478 5.92799 5.97019 6.14856 6.22711 6.30283 6.31370 6.68375 7.20985 7.25910 7.61043 7.66594 7.73199 7.94758 8.13535 8.30999 8.34369 9.00614 9.59485 11.11605 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.004538 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.835145 B = 6168.250179 C = 7715.458846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.655 3.345 4 O -0.562 6.562 5 N -0.591 5.591 6 C 0.118 3.882 7 C -0.149 4.149 8 C -0.096 4.096 9 C -0.117 4.117 10 C -0.148 4.148 11 C 0.524 3.476 12 O -0.480 6.480 13 N -0.566 5.566 14 C 0.102 3.898 15 C 0.015 3.985 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.536 3.464 25 O -0.464 6.464 26 C 0.150 3.850 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.104 0.896 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.098 -15.619 -14.421 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.284 6.284 3 C 0.409 3.591 4 O -0.449 6.449 5 N -0.331 5.331 6 C -0.005 4.005 7 C -0.187 4.187 8 C -0.134 4.134 9 C -0.121 4.121 10 C -0.189 4.189 11 C 0.312 3.688 12 O -0.352 6.352 13 N -0.308 5.308 14 C -0.017 4.017 15 C -0.023 4.023 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C 0.323 3.677 25 O -0.334 6.334 26 C 0.028 3.972 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.123 0.877 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.430 -15.127 -13.993 23.096 hybrid contribution -0.655 0.438 1.005 1.277 sum 9.775 -14.689 -12.988 21.910 Atomic orbital electron populations 1.23194 0.74435 1.03217 1.03009 1.86175 1.24123 1.30994 1.87156 1.17911 0.82938 0.82240 0.76019 1.91058 1.63975 1.34840 1.55045 1.46634 1.02094 1.07812 1.76530 1.21685 0.93820 0.86720 0.98264 1.22118 0.98358 0.97331 1.00876 1.21391 0.96445 0.92054 1.03532 1.21554 0.97412 0.97696 0.95456 1.22558 1.03002 0.95376 0.97932 1.20636 0.77537 0.84108 0.86511 1.90768 1.52511 1.19390 1.72484 1.47047 1.41787 1.20506 1.21435 1.22254 0.99169 1.01031 0.79263 1.19366 0.89872 0.94839 0.98239 1.20984 1.08349 1.34997 0.91829 0.92358 1.25003 0.96658 0.95730 0.96822 1.69982 1.17367 1.37707 1.27750 0.86516 0.78058 0.78875 0.84099 1.20533 1.21147 1.19776 1.20202 0.80516 0.80909 0.86096 1.90710 1.32566 1.39987 1.70140 1.21421 0.94393 0.85243 0.96162 0.91992 0.88131 0.91507 0.91157 0.88889 0.90095 0.89220 0.89788 0.90726 0.86041 0.85994 0.90037 0.90160 0.95967 0.96034 0.92839 0.87739 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.56 101.05 1.07 1.70 16 2 O -0.37 -5.10 9.21 -40.33 -0.37 -5.47 16 3 C 0.65 10.53 8.43 54.05 0.46 10.99 16 4 O -0.56 -11.28 15.55 -19.28 -0.30 -11.58 16 5 N -0.59 -7.51 2.56 -178.85 -0.46 -7.97 16 6 C 0.12 1.05 6.43 -3.70 -0.02 1.02 16 7 C -0.15 -1.30 5.82 -26.57 -0.15 -1.45 16 8 C -0.10 -0.76 4.51 -26.95 -0.12 -0.89 16 9 C -0.12 -1.32 0.69 -155.73 -0.11 -1.43 16 10 C -0.15 -1.51 6.30 -27.12 -0.17 -1.68 16 11 C 0.52 8.70 8.09 -10.99 -0.09 8.61 16 12 O -0.48 -9.61 17.48 5.60 0.10 -9.52 16 13 N -0.57 -10.57 2.56 -115.42 -0.30 -10.87 16 14 C 0.10 2.26 5.50 -4.04 -0.02 2.24 16 15 C 0.01 0.40 5.30 -27.88 -0.15 0.25 16 16 C -0.52 -15.40 9.11 -34.44 -0.31 -15.71 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -27.99 13.29 55.43 0.74 -27.25 16 20 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.54 9.12 6.50 -11.26 -0.07 9.05 16 25 O -0.46 -9.30 14.99 5.60 0.08 -9.21 16 26 C 0.15 1.74 4.94 -3.98 -0.02 1.72 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.84 6.93 -51.93 -0.36 0.48 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.11 5.96 -51.93 -0.31 0.80 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 1.01 7.71 -51.93 -0.40 0.61 16 37 H 0.12 0.83 7.72 -51.93 -0.40 0.43 16 38 H 0.08 1.77 7.83 -51.93 -0.41 1.36 16 39 H 0.08 1.76 7.83 -51.93 -0.41 1.35 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.10 1.56 7.00 -51.93 -0.36 1.20 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -39.08 362.56 -6.30 -45.38 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.42 Total: -2.45 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 0.18 Total: 16.12 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.02 Total: -46.09 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.49 Total: -35.78 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.08 -6.30 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274319516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.844 kcal (2) G-P(sol) polarization free energy of solvation -39.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds