Wall clock time and date at job start Tue Mar 31 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86798 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47064 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47092 * 59.99887 * 3 2 1 7 7 C 1.38959 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99582 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99759 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00317 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99613 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.46682 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99659 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99982 * 4.98276 * 14 13 12 16 16 N 1.34769 * 119.99887 * 184.98630 * 14 13 12 17 17 C 1.46940 * 120.56000 * 174.77366 * 16 14 13 18 18 C 1.53325 * 108.69358 * 125.73342 * 17 16 14 19 19 C 1.52203 * 109.43189 * 53.43214 * 18 17 16 20 20 C 1.53805 * 110.67306 * 64.08494 * 19 18 17 21 21 N 1.46925 * 105.33413 * 93.30168 * 20 19 18 22 22 C 1.34498 * 111.29908 * 16.67180 * 21 20 19 23 23 O 1.21284 * 124.94121 * 179.33165 * 22 21 20 24 24 C 1.51439 * 110.10670 * 359.19671 * 22 21 20 25 25 C 1.52211 * 111.40630 * 300.49895 * 19 18 17 26 26 C 1.46931 * 120.55996 * 354.79249 * 16 14 13 27 27 H 0.96998 * 119.99995 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99815 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47452 * 60.00296 * 12 10 9 30 30 H 1.08998 * 109.46849 * 299.99640 * 12 10 9 31 31 H 0.96999 * 120.00461 * 0.02562 * 13 12 10 32 32 H 1.09000 * 109.59472 * 5.96891 * 17 16 14 33 33 H 1.09000 * 109.59932 * 245.49642 * 17 16 14 34 34 H 1.09006 * 109.47974 * 293.44230 * 18 17 16 35 35 H 1.09004 * 109.48086 * 173.42305 * 18 17 16 36 36 H 1.09004 * 110.27354 * 334.33675 * 20 19 18 37 37 H 1.09003 * 110.27510 * 212.26870 * 20 19 18 38 38 H 0.97004 * 124.34519 * 196.40952 * 21 20 19 39 39 H 1.09001 * 110.66753 * 225.94748 * 24 22 21 40 40 H 1.08998 * 110.30000 * 103.27930 * 24 22 21 41 41 H 1.09004 * 109.47410 * 179.48171 * 25 19 18 42 42 H 1.08998 * 109.47546 * 299.50654 * 25 19 18 43 43 H 1.08994 * 109.59809 * 354.03068 * 26 16 14 44 44 H 1.08997 * 109.59705 * 114.50020 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1958 -5.9765 -0.0016 14 6 1.7465 -7.2472 -0.0017 15 8 0.5548 -7.4707 -0.0928 16 7 2.6182 -8.2701 0.0993 17 6 2.1365 -9.6534 0.2156 18 6 2.7910 -10.4959 -0.8857 19 6 4.3024 -10.3286 -0.8203 20 6 4.8531 -10.8822 0.5048 21 7 5.2344 -12.2716 0.2169 22 6 5.3308 -12.4874 -1.1071 23 8 5.6409 -13.5427 -1.6182 24 6 4.9927 -11.2218 -1.8669 25 6 4.7088 -8.8735 -1.0049 26 6 4.0662 -8.0208 0.0955 27 1 -0.4850 0.8400 -0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6174 -4.9206 -0.8914 30 1 0.6168 -4.9209 0.8886 31 1 3.1495 -5.7993 -0.0012 32 1 1.0531 -9.6745 0.0970 33 1 2.4075 -10.0541 1.1923 34 1 2.4305 -10.1646 -1.8595 35 1 2.5349 -11.5455 -0.7411 36 1 4.0826 -10.8539 1.2753 37 1 5.7249 -10.3090 0.8204 38 1 5.3993 -12.9456 0.8948 39 1 4.3139 -11.4380 -2.6919 40 1 5.9024 -10.7467 -2.2341 41 1 5.7938 -8.7886 -0.9435 42 1 4.3713 -8.5228 -1.9802 43 1 4.2550 -6.9658 -0.1023 44 1 4.4869 -8.2948 1.0629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312659894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:59 Heat of formation + Delta-G solvation = -95.954857 kcal Electronic energy + Delta-G solvation = -27501.068537 eV Core-core repulsion = 23453.254118 eV Total energy + Delta-G solvation = -4047.814419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50382 -40.03128 -38.46965 -37.85518 -35.76897 -34.55810 -33.79700 -33.02964 -31.55559 -31.35145 -29.45198 -27.59461 -26.64575 -24.67252 -23.91944 -23.45973 -20.99333 -20.50427 -19.71294 -18.98518 -18.30216 -17.92549 -17.54931 -16.49313 -16.26639 -15.75670 -15.59709 -15.37711 -14.83182 -14.74664 -14.59901 -14.47603 -14.33208 -13.88628 -13.77965 -13.55810 -13.50179 -13.32738 -13.07199 -12.64958 -12.20931 -12.09865 -11.97101 -11.66908 -11.62961 -11.47196 -11.16683 -11.06557 -10.89265 -10.43400 -10.35245 -10.21122 -9.99531 -9.67475 -9.52278 -8.99728 -8.66038 -8.52262 -8.12896 -6.54129 -3.96173 2.24273 2.61761 2.97177 3.07987 3.20584 3.26863 3.27734 3.71748 3.83699 3.89689 3.94258 4.10240 4.12581 4.42305 4.57966 4.70444 4.82085 4.86596 4.95235 5.04968 5.09820 5.14538 5.15457 5.18622 5.32559 5.45866 5.49837 5.56802 5.66276 5.71446 5.87131 5.89471 5.97653 6.05004 6.37692 6.39471 6.59697 6.70332 6.95031 7.43587 7.87176 7.89796 8.08996 8.42051 8.71059 9.01978 9.36757 9.84224 10.62768 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.002174 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.946700 B =12878.088136 C =13410.778922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.724 5.724 14 C 0.709 3.291 15 O -0.595 6.595 16 N -0.631 5.631 17 C 0.130 3.870 18 C -0.122 4.122 19 C -0.068 4.068 20 C 0.104 3.896 21 N -0.732 5.732 22 C 0.520 3.480 23 O -0.538 6.538 24 C -0.148 4.148 25 C -0.120 4.120 26 C 0.108 3.892 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.406 0.594 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.409 0.591 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 -19.794 1.172 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.384 5.384 14 C 0.410 3.590 15 O -0.474 6.474 16 N -0.369 5.369 17 C 0.007 3.993 18 C -0.160 4.160 19 C -0.069 4.069 20 C -0.020 4.020 21 N -0.388 5.388 22 C 0.307 3.693 23 O -0.415 6.415 24 C -0.188 4.188 25 C -0.159 4.159 26 C -0.016 4.016 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.246 0.754 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.336 -20.190 0.766 21.495 hybrid contribution 0.334 0.764 0.366 0.910 sum 7.670 -19.426 1.132 20.916 Atomic orbital electron populations 1.69618 1.06015 1.28450 1.49302 1.25336 0.95674 0.99962 0.96804 0.85757 0.79661 0.80820 0.77840 1.19141 1.20611 1.20616 1.19771 0.93466 0.81964 1.48192 0.87622 1.41798 1.09519 1.04477 1.62548 1.19751 0.88279 0.85000 0.85544 1.90481 1.13758 1.86882 1.57507 1.20803 0.91270 0.84918 1.03161 1.44974 1.11279 1.03357 1.78782 1.15756 0.84819 0.80614 0.77831 1.90898 1.14268 1.83888 1.58311 1.47172 1.05368 1.05853 1.78527 1.21470 1.01002 0.79443 0.97432 1.21868 0.92788 1.00487 1.00881 1.20941 0.96198 0.95660 0.94075 1.22294 1.00324 0.81568 0.97794 1.46300 1.71130 1.13283 1.08040 1.20988 0.75573 0.89537 0.83250 1.90766 1.48531 1.29501 1.72720 1.22433 1.03195 0.94225 0.98958 1.21861 1.01004 0.92509 1.00476 1.21702 0.80369 1.00690 0.98848 0.91617 0.77003 0.89947 0.90066 0.75391 0.88311 0.91713 0.90354 0.90523 0.89670 0.90502 0.75223 0.87691 0.87456 0.89876 0.90172 0.89291 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.49 13.05 55.50 0.72 -22.77 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.15 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 8 H 0.11 2.93 7.16 -52.48 -0.38 2.55 16 9 N -0.55 -13.28 5.29 -10.96 -0.06 -13.34 16 10 C 0.43 9.51 7.85 -10.99 -0.09 9.43 16 11 O -0.60 -14.74 15.24 5.55 0.08 -14.66 16 12 C 0.13 2.27 6.16 -5.19 -0.03 2.24 16 13 N -0.72 -11.57 5.44 -66.41 -0.36 -11.93 16 14 C 0.71 10.79 8.29 -86.92 -0.72 10.07 16 15 O -0.59 -11.02 15.76 5.29 0.08 -10.94 16 16 N -0.63 -6.73 2.96 -178.32 -0.53 -7.26 16 17 C 0.13 1.11 6.15 -3.63 -0.02 1.09 16 18 C -0.12 -0.82 4.80 -26.97 -0.13 -0.95 16 19 C -0.07 -0.38 0.60 -154.41 -0.09 -0.48 16 20 C 0.10 0.49 5.88 -3.39 -0.02 0.47 16 21 N -0.73 -4.52 6.25 -59.37 -0.37 -4.89 16 22 C 0.52 4.70 8.45 -10.75 -0.09 4.61 16 23 O -0.54 -7.31 18.03 5.55 0.10 -7.21 16 24 C -0.15 -0.95 5.95 -27.03 -0.16 -1.11 16 25 C -0.12 -0.71 4.68 -26.97 -0.13 -0.84 16 26 C 0.11 0.84 6.12 -3.64 -0.02 0.82 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.41 6.25 4.91 -40.82 -0.20 6.05 16 32 H 0.10 1.05 6.99 -51.93 -0.36 0.69 16 33 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.35 6.11 -51.93 -0.32 0.03 16 37 H 0.08 0.29 7.80 -51.93 -0.40 -0.11 16 38 H 0.41 2.04 8.96 -40.82 -0.37 1.68 16 39 H 0.10 0.67 7.88 -51.93 -0.41 0.26 16 40 H 0.11 0.58 7.85 -51.93 -0.41 0.17 16 41 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.81 5.63 -51.93 -0.29 0.52 16 44 H 0.07 0.44 7.60 -51.93 -0.39 0.04 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -34.08 355.43 -7.60 -41.68 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.86 Total: 13.17 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: -1.74 Total: 17.67 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.59 Total: -60.19 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: 0.27 Total: -32.80 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.08 -7.60 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312659894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.274 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds