Wall clock time and date at job start Tue Mar 31 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86798 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47064 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47092 * 59.99887 * 3 2 1 7 7 C 1.38959 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99582 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99759 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00317 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99613 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.46682 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99659 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99982 * 4.98276 * 14 13 12 16 16 N 1.34769 * 119.99887 * 184.98630 * 14 13 12 17 17 C 1.46940 * 120.56000 * 174.77366 * 16 14 13 18 18 C 1.53325 * 108.69358 * 125.73342 * 17 16 14 19 19 C 1.52203 * 109.43189 * 53.43214 * 18 17 16 20 20 C 1.53805 * 110.67306 * 64.08494 * 19 18 17 21 21 N 1.46925 * 105.33413 * 93.30168 * 20 19 18 22 22 C 1.34498 * 111.29908 * 16.67180 * 21 20 19 23 23 O 1.21284 * 124.94121 * 179.33165 * 22 21 20 24 24 C 1.51439 * 110.10670 * 359.19671 * 22 21 20 25 25 C 1.52211 * 111.40630 * 300.49895 * 19 18 17 26 26 C 1.46931 * 120.55996 * 354.79249 * 16 14 13 27 27 H 0.96998 * 119.99995 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99815 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47452 * 60.00296 * 12 10 9 30 30 H 1.08998 * 109.46849 * 299.99640 * 12 10 9 31 31 H 0.96999 * 120.00461 * 0.02562 * 13 12 10 32 32 H 1.09000 * 109.59472 * 5.96891 * 17 16 14 33 33 H 1.09000 * 109.59932 * 245.49642 * 17 16 14 34 34 H 1.09006 * 109.47974 * 293.44230 * 18 17 16 35 35 H 1.09004 * 109.48086 * 173.42305 * 18 17 16 36 36 H 1.09004 * 110.27354 * 334.33675 * 20 19 18 37 37 H 1.09003 * 110.27510 * 212.26870 * 20 19 18 38 38 H 0.97004 * 124.34519 * 196.40952 * 21 20 19 39 39 H 1.09001 * 110.66753 * 225.94748 * 24 22 21 40 40 H 1.08998 * 110.30000 * 103.27930 * 24 22 21 41 41 H 1.09004 * 109.47410 * 179.48171 * 25 19 18 42 42 H 1.08998 * 109.47546 * 299.50654 * 25 19 18 43 43 H 1.08994 * 109.59809 * 354.03068 * 26 16 14 44 44 H 1.08997 * 109.59705 * 114.50020 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1958 -5.9765 -0.0016 14 6 1.7465 -7.2472 -0.0017 15 8 0.5548 -7.4707 -0.0928 16 7 2.6182 -8.2701 0.0993 17 6 2.1365 -9.6534 0.2156 18 6 2.7910 -10.4959 -0.8857 19 6 4.3024 -10.3286 -0.8203 20 6 4.8531 -10.8822 0.5048 21 7 5.2344 -12.2716 0.2169 22 6 5.3308 -12.4874 -1.1071 23 8 5.6409 -13.5427 -1.6182 24 6 4.9927 -11.2218 -1.8669 25 6 4.7088 -8.8735 -1.0049 26 6 4.0662 -8.0208 0.0955 27 1 -0.4850 0.8400 -0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6174 -4.9206 -0.8914 30 1 0.6168 -4.9209 0.8886 31 1 3.1495 -5.7993 -0.0012 32 1 1.0531 -9.6745 0.0970 33 1 2.4075 -10.0541 1.1923 34 1 2.4305 -10.1646 -1.8595 35 1 2.5349 -11.5455 -0.7411 36 1 4.0826 -10.8539 1.2753 37 1 5.7249 -10.3090 0.8204 38 1 5.3993 -12.9456 0.8948 39 1 4.3139 -11.4380 -2.6919 40 1 5.9024 -10.7467 -2.2341 41 1 5.7938 -8.7886 -0.9435 42 1 4.3713 -8.5228 -1.9802 43 1 4.2550 -6.9658 -0.1023 44 1 4.4869 -8.2948 1.0629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312659894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:58 Heat of formation + Delta-G solvation = -123.371227 kcal Electronic energy + Delta-G solvation = -27502.257400 eV Core-core repulsion = 23453.254118 eV Total energy + Delta-G solvation = -4049.003282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16894 -41.11007 -40.06597 -38.83954 -36.59579 -36.24374 -35.35196 -33.75307 -33.33619 -32.18333 -30.20165 -28.94021 -27.29891 -26.36162 -24.60022 -24.28243 -21.59480 -21.54118 -21.28103 -20.23376 -19.81985 -18.93964 -18.25460 -17.53547 -17.22311 -17.01043 -16.89839 -16.51399 -16.08118 -15.89640 -15.81238 -15.48028 -15.25690 -15.14697 -14.72623 -14.68295 -14.21876 -14.08307 -13.93933 -13.63173 -13.53050 -13.47040 -13.27633 -12.89969 -12.68495 -12.42274 -12.23863 -12.10358 -12.09267 -11.66942 -11.55863 -11.48465 -11.22756 -10.90493 -10.52637 -10.26005 -10.07302 -10.06484 -9.45446 -8.49222 -5.99081 1.36773 1.44251 1.55146 1.57641 1.61403 1.91888 2.12430 2.29549 2.47170 2.87554 3.18327 3.18882 3.32016 3.38254 3.59917 3.86309 4.01870 4.10217 4.21539 4.27206 4.40559 4.46022 4.48930 4.55142 4.61683 4.66152 4.69989 4.74614 4.89881 4.99253 5.01840 5.05838 5.19998 5.32975 5.35666 5.41417 5.60697 5.86609 5.91943 5.94732 6.03687 6.49938 6.94576 7.05665 7.26451 7.44682 7.54804 7.96481 8.67905 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.002174 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.946700 B =12878.088136 C =13410.778922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.013 4.013 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.088 0.912 9 N -0.561 5.561 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.140 3.860 13 N -0.726 5.726 14 C 0.705 3.295 15 O -0.633 6.633 16 N -0.621 5.621 17 C 0.128 3.872 18 C -0.114 4.114 19 C -0.060 4.060 20 C 0.104 3.896 21 N -0.720 5.720 22 C 0.513 3.487 23 O -0.593 6.593 24 C -0.142 4.142 25 C -0.113 4.113 26 C 0.102 3.898 27 H 0.279 0.721 28 H 0.398 0.602 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.409 0.591 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.416 0.584 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.614 -19.939 1.957 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.106 0.894 9 N -0.196 5.196 10 C 0.222 3.778 11 O -0.510 6.510 12 C 0.012 3.988 13 N -0.386 5.386 14 C 0.406 3.594 15 O -0.514 6.514 16 N -0.359 5.359 17 C 0.005 3.995 18 C -0.153 4.153 19 C -0.061 4.061 20 C -0.019 4.019 21 N -0.374 5.374 22 C 0.301 3.699 23 O -0.474 6.474 24 C -0.182 4.182 25 C -0.151 4.151 26 C -0.021 4.021 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.255 0.745 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.549 -20.356 1.586 22.135 hybrid contribution -0.024 0.727 0.151 0.743 sum 8.525 -19.629 1.737 21.470 Atomic orbital electron populations 1.69686 1.07021 1.29513 1.49482 1.26134 0.96531 1.02714 0.95925 0.84811 0.78203 0.76770 0.78200 1.19284 1.19813 1.19749 1.19769 0.92966 0.83459 1.50115 0.89436 1.41853 1.09608 1.04641 1.63506 1.20395 0.88123 0.85835 0.83406 1.90457 1.15061 1.87552 1.57971 1.20576 0.91107 0.83263 1.03891 1.44895 1.11023 1.03310 1.79333 1.15907 0.84865 0.80936 0.77703 1.90872 1.16103 1.84410 1.60064 1.47260 1.06179 1.05511 1.76902 1.21631 0.99897 0.78494 0.99451 1.21785 0.93566 1.00399 0.99525 1.20844 0.95137 0.95475 0.94624 1.22461 1.01583 0.80621 0.97262 1.46322 1.69596 1.14154 1.07339 1.21391 0.74912 0.89422 0.84225 1.90738 1.51258 1.31576 1.73837 1.22410 1.03844 0.93125 0.98813 1.21825 1.02305 0.91869 0.99125 1.21961 0.78535 1.00524 1.01046 0.91141 0.76746 0.89361 0.89109 0.74968 0.90659 0.89065 0.91618 0.89731 0.88328 0.88377 0.74508 0.87897 0.86019 0.87341 0.91253 0.90555 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.06 13.05 21.67 0.28 -47.77 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 3 Si 1.00 40.94 29.55 68.60 2.03 42.97 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.33 -17.95 9.68 84.04 0.81 -17.14 16 8 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.56 -27.47 5.29 -306.98 -1.62 -29.09 16 10 C 0.44 19.40 7.85 87.66 0.69 20.09 16 11 O -0.62 -30.71 15.24 -3.07 -0.05 -30.76 16 12 C 0.14 4.99 6.16 85.63 0.53 5.52 16 13 N -0.73 -22.69 5.44 -482.27 -2.62 -25.31 16 14 C 0.70 20.92 8.29 179.06 1.48 22.41 16 15 O -0.63 -23.39 15.76 -3.99 -0.06 -23.45 16 16 N -0.62 -12.20 2.96 -836.36 -2.48 -14.67 16 17 C 0.13 1.96 6.15 86.40 0.53 2.49 16 18 C -0.11 -1.33 4.80 30.44 0.15 -1.19 16 19 C -0.06 -0.51 0.60 -52.12 -0.03 -0.54 16 20 C 0.10 0.59 5.88 86.57 0.51 1.09 16 21 N -0.72 -7.07 6.25 -460.30 -2.88 -9.94 16 22 C 0.51 8.54 8.45 87.94 0.74 9.28 16 23 O -0.59 -16.05 18.03 -3.04 -0.05 -16.10 16 24 C -0.14 -1.53 5.95 30.40 0.18 -1.35 16 25 C -0.11 -1.00 4.68 30.44 0.14 -0.86 16 26 C 0.10 1.32 6.12 86.41 0.53 1.85 16 27 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.41 12.28 4.91 -92.71 -0.46 11.82 16 32 H 0.07 1.57 6.99 -2.39 -0.02 1.55 16 33 H 0.09 0.94 6.54 -2.39 -0.02 0.93 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.37 6.11 -2.38 -0.01 0.35 16 37 H 0.10 0.25 7.80 -2.39 -0.02 0.24 16 38 H 0.42 3.20 8.96 -92.71 -0.83 2.37 16 39 H 0.10 1.19 7.88 -2.39 -0.02 1.17 16 40 H 0.12 1.00 7.85 -2.39 -0.02 0.98 16 41 H 0.11 0.49 8.08 -2.39 -0.02 0.47 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.24 5.63 -2.39 -0.01 1.23 16 44 H 0.10 0.80 7.60 -2.39 -0.02 0.78 16 Total: -1.00 -74.89 355.43 -1.66 -76.55 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.94 Total: 36.11 kcal Atomic # 6 Polarization: 34.75 SS G_CDS: 6.73 Total: 41.48 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -9.31 Total: -126.79 kcal Atomic # 8 Polarization: -70.15 SS G_CDS: -0.16 Total: -70.31 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -74.89 -1.66 -76.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312659894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.823 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds