Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48502 * 109.47101 * 240.00143 * 3 2 1 5 5 H 1.48501 * 109.47126 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47243 * 120.00228 * 3 2 1 7 7 C 1.37874 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.44678 * 59.97214 * 9 7 2 11 11 C 1.53196 * 109.31461 * 181.37666 * 10 9 7 12 12 N 1.46930 * 108.77547 * 305.36560 * 11 10 9 13 13 C 1.34774 * 120.63128 * 233.58472 * 12 11 10 14 14 O 1.21579 * 120.00023 * 174.78978 * 13 12 11 15 15 N 1.34776 * 119.99661 * 354.79701 * 13 12 11 16 16 N 1.40105 * 119.99864 * 184.98347 * 15 13 12 17 17 C 1.34774 * 119.99967 * 185.00838 * 16 15 13 18 18 O 1.21281 * 120.00279 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99655 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.22117 * 41.92523 * 19 17 16 21 21 C 1.54486 * 110.24620 * 279.99717 * 19 17 16 22 22 C 1.54631 * 101.76576 * 215.58652 * 21 19 17 23 23 C 1.51289 * 104.19396 * 24.79787 * 22 21 19 24 24 O 1.21277 * 124.94062 * 163.74777 * 23 22 21 25 25 N 1.34413 * 110.11773 * 343.74645 * 23 22 21 26 26 C 1.46930 * 118.73946 * 53.60622 * 12 11 10 27 27 C 1.53042 * 109.45927 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00612 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46439 * 300.00268 * 9 7 2 30 30 H 1.08996 * 109.49566 * 301.32782 * 10 9 7 31 31 H 1.08996 * 109.49998 * 61.42516 * 10 9 7 32 32 H 1.08997 * 109.59038 * 185.57984 * 11 10 9 33 33 H 1.09004 * 109.58281 * 65.14761 * 11 10 9 34 34 H 0.96999 * 120.00375 * 4.97536 * 15 13 12 35 35 H 0.97004 * 119.99880 * 5.00509 * 16 15 13 36 36 H 1.09005 * 110.96330 * 333.70471 * 21 19 17 37 37 H 1.08997 * 110.96748 * 97.46583 * 21 19 17 38 38 H 1.09001 * 110.48716 * 143.47176 * 22 21 19 39 39 H 1.08998 * 110.48674 * 265.98558 * 22 21 19 40 40 H 0.97004 * 124.35334 * 179.57177 * 25 23 22 41 41 H 1.09000 * 109.58708 * 186.60954 * 26 12 11 42 42 H 1.08997 * 109.70520 * 66.24760 * 26 12 11 43 43 H 1.08999 * 109.50016 * 298.58317 * 27 9 7 44 44 H 1.08998 * 109.50206 * 58.64945 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 0.3704 -2.5790 -1.2496 11 6 -0.4199 -3.8912 -1.2293 12 7 0.5228 -5.0088 -1.0830 13 6 0.5121 -6.0349 -1.9567 14 8 1.3572 -6.9058 -1.8819 15 7 -0.4352 -6.0955 -2.9134 16 7 -0.5103 -7.2131 -3.7551 17 6 -1.3908 -7.2304 -4.7753 18 8 -2.1184 -6.2787 -4.9646 19 6 -1.4711 -8.4322 -5.6809 20 1 -1.4109 -9.3497 -5.0955 21 6 -0.3352 -8.3902 -6.7271 22 6 -1.0296 -8.9917 -7.9709 23 6 -2.5001 -8.7181 -7.7434 24 8 -3.3577 -8.7753 -8.5989 25 7 -2.7177 -8.4024 -6.4551 26 6 1.4769 -4.9867 0.0341 27 6 2.2459 -3.6621 -0.0005 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5569 0.8897 30 1 -0.3221 -1.7374 -1.2609 31 1 0.9982 -2.5462 -2.1401 32 1 -0.9728 -3.9994 -2.1624 33 1 -1.1142 -3.8866 -0.3890 34 1 -1.0651 -5.3655 -3.0192 35 1 0.0714 -7.9744 -3.6035 36 1 -0.0165 -7.3650 -6.9158 37 1 0.5067 -9.0074 -6.4137 38 1 -0.6851 -8.4948 -8.8778 39 1 -0.8437 -10.0640 -8.0303 40 1 -3.5869 -8.1827 -6.0846 41 1 2.1754 -5.8174 -0.0654 42 1 0.9392 -5.0724 0.9784 43 1 2.8559 -3.6191 -0.9028 44 1 2.8886 -3.5912 0.8769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331531162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = -85.485107 kcal Electronic energy + Delta-G solvation = -27450.112113 eV Core-core repulsion = 23402.751696 eV Total energy + Delta-G solvation = -4047.360417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08593 -41.42584 -40.16295 -38.61013 -37.36084 -36.47417 -35.41143 -33.55572 -32.39144 -32.05843 -31.50747 -29.07559 -27.83525 -24.91359 -24.13405 -23.70070 -22.45924 -22.08159 -21.53549 -20.63603 -19.49163 -18.99627 -18.50602 -18.14695 -17.96740 -16.98897 -16.72461 -16.68491 -16.40849 -15.99059 -15.93025 -15.20618 -15.07022 -14.90168 -14.73258 -14.61008 -14.28394 -14.14412 -14.11019 -13.61536 -13.27385 -13.16311 -13.04304 -12.80745 -12.54377 -12.42582 -12.14557 -12.09742 -12.02747 -11.55984 -11.47229 -11.35698 -11.03682 -10.99529 -10.80965 -10.39741 -10.28929 -9.84321 -9.27975 -8.07747 -6.20381 0.48633 1.20024 1.42608 1.43728 1.50352 1.50562 1.97167 2.14923 2.37567 2.44271 2.88703 3.19282 3.28245 3.43084 3.69130 3.99445 4.03174 4.06416 4.21329 4.35163 4.42616 4.48261 4.60353 4.66403 4.84802 4.88378 4.96299 4.98561 5.04350 5.08941 5.21894 5.34146 5.42733 5.52047 5.59776 5.64554 5.70963 5.90109 6.00359 6.12943 6.18857 6.40092 6.70331 6.84965 6.89664 7.12127 7.43878 7.47480 8.95270 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.002402 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.558098 B =11655.402537 C =12379.102369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.116 4.116 11 C 0.119 3.881 12 N -0.611 5.611 13 C 0.714 3.286 14 O -0.617 6.617 15 N -0.546 5.546 16 N -0.488 5.488 17 C 0.504 3.496 18 O -0.573 6.573 19 C 0.134 3.866 20 H 0.161 0.839 21 C -0.118 4.118 22 C -0.144 4.144 23 C 0.512 3.488 24 O -0.585 6.585 25 N -0.711 5.711 26 C 0.137 3.863 27 C -0.115 4.115 28 H 0.261 0.739 29 H 0.008 0.992 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.429 0.571 35 H 0.443 0.557 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.412 0.588 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -20.627 -9.013 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.155 4.155 11 C -0.003 4.003 12 N -0.348 5.348 13 C 0.415 3.585 14 O -0.498 6.498 15 N -0.300 5.300 16 N -0.237 5.237 17 C 0.289 3.711 18 O -0.450 6.450 19 C 0.024 3.976 20 H 0.178 0.822 21 C -0.156 4.156 22 C -0.183 4.183 23 C 0.301 3.699 24 O -0.465 6.465 25 N -0.365 5.365 26 C 0.015 3.985 27 C -0.153 4.153 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.274 0.726 35 H 0.288 0.712 36 H 0.095 0.905 37 H 0.166 0.834 38 H 0.130 0.870 39 H 0.160 0.840 40 H 0.251 0.749 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.875 -20.500 -9.543 22.629 hybrid contribution -0.315 1.883 0.379 1.947 sum -1.190 -18.617 -9.164 20.784 Atomic orbital electron populations 1.69927 1.06793 1.27138 1.51323 1.25623 0.95661 1.01914 0.94991 0.85800 0.78539 0.79807 0.78613 1.20170 1.21112 1.19800 1.21543 0.92990 0.92250 1.50352 0.93290 1.18609 0.93114 0.92099 0.93523 1.21797 0.99426 0.95847 0.98386 1.21797 0.91106 0.85907 1.01517 1.47310 1.38344 1.20386 1.28729 1.15497 0.81016 0.82840 0.79189 1.90859 1.40653 1.41990 1.76254 1.43918 1.36630 1.17204 1.32286 1.44624 1.41164 1.12184 1.25773 1.21700 0.79186 0.90409 0.79787 1.90795 1.44113 1.38065 1.72011 1.21765 0.86547 0.95978 0.93335 0.82225 1.22827 0.96847 1.04246 0.91682 1.22434 0.88982 1.06212 1.00711 1.21647 0.92898 0.74197 0.81183 1.90750 1.52927 1.55041 1.47789 1.46121 1.10459 1.69816 1.10107 1.21594 0.91197 0.98423 0.87319 1.21885 0.98268 0.94277 1.00917 0.93007 0.97430 0.90359 0.95511 0.90301 0.90680 0.72614 0.71184 0.90458 0.83401 0.87034 0.83994 0.74879 0.89119 0.90543 0.93937 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.77 11.31 21.45 0.24 -49.53 16 2 C 0.02 0.90 5.30 84.65 0.45 1.35 16 3 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -27.93 8.56 25.60 0.22 -27.71 16 8 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 9 C 0.05 2.07 2.06 -11.51 -0.02 2.05 16 10 C -0.12 -4.95 5.15 30.67 0.16 -4.79 16 11 C 0.12 3.91 6.39 86.36 0.55 4.46 16 12 N -0.61 -19.35 2.97 -836.88 -2.49 -21.84 16 13 C 0.71 21.41 8.41 179.06 1.51 22.92 16 14 O -0.62 -20.38 15.62 -3.97 -0.06 -20.44 16 15 N -0.55 -13.62 6.16 -184.76 -1.14 -14.75 16 16 N -0.49 -8.60 6.25 -173.54 -1.08 -9.68 16 17 C 0.50 8.65 7.14 87.66 0.63 9.28 16 18 O -0.57 -15.37 16.38 -3.03 -0.05 -15.42 16 19 C 0.13 1.12 3.93 44.70 0.18 1.30 16 20 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 21 C -0.12 -0.56 6.68 31.65 0.21 -0.35 16 22 C -0.14 -1.03 6.86 30.59 0.21 -0.82 16 23 C 0.51 9.13 8.43 87.90 0.74 9.87 16 24 O -0.58 -16.60 18.03 -3.02 -0.05 -16.65 16 25 N -0.71 -10.39 5.46 -442.95 -2.42 -12.81 16 26 C 0.14 4.37 6.44 86.36 0.56 4.92 16 27 C -0.12 -4.37 5.30 30.68 0.16 -4.21 16 28 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 3.81 6.03 -2.39 -0.01 3.80 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.08 2.24 5.65 -2.39 -0.01 2.22 16 33 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.43 11.03 5.50 -213.32 -1.17 9.86 16 35 H 0.44 5.66 8.03 -213.31 -1.71 3.95 16 36 H 0.08 0.66 7.91 -2.38 -0.02 0.64 16 37 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.41 6.68 8.94 -92.71 -0.83 5.85 16 41 H 0.09 2.78 7.00 -2.39 -0.02 2.76 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -75.68 360.22 -2.13 -77.81 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -2.65 Total: 20.71 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 5.54 Total: 18.27 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -6.89 Total: -108.62 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.17 Total: -52.51 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -75.68 -2.13 -77.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331531162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.674 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds