Wall clock time and date at job start Tue Mar 31 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48493 * 109.47282 * 240.00032 * 3 2 1 5 5 H 1.48509 * 109.46916 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47485 * 119.99873 * 3 2 1 7 7 C 1.37873 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99566 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00440 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.51801 * 299.91626 * 9 7 2 11 11 C 1.53034 * 109.49913 * 179.83883 * 9 7 2 12 12 C 1.53042 * 109.53835 * 178.68079 * 11 9 7 13 13 C 1.52763 * 109.38156 * 61.24001 * 12 11 9 14 14 N 1.46924 * 109.00684 * 305.58492 * 13 12 11 15 15 C 1.34773 * 120.63292 * 233.58489 * 14 13 12 16 16 O 1.21587 * 120.00138 * 184.90666 * 15 14 13 17 17 N 1.34783 * 119.99694 * 4.90728 * 15 14 13 18 18 N 1.40096 * 119.99858 * 185.12869 * 17 15 14 19 19 C 1.34775 * 120.00128 * 174.79323 * 18 17 15 20 20 O 1.21274 * 119.99973 * 0.27427 * 19 18 17 21 21 C 1.50703 * 119.99943 * 180.27274 * 19 18 17 22 22 H 1.08997 * 110.22143 * 320.47989 * 21 19 18 23 23 C 1.54481 * 110.24372 * 82.50343 * 21 19 18 24 24 C 1.54627 * 101.76733 * 144.41512 * 23 21 19 25 25 C 1.51282 * 104.19199 * 335.19459 * 24 23 21 26 26 O 1.21283 * 124.93934 * 196.26889 * 25 24 23 27 27 N 1.34422 * 110.11707 * 16.25927 * 25 24 23 28 28 C 1.46925 * 118.73633 * 53.31566 * 14 13 12 29 29 H 0.96997 * 120.00352 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46372 * 298.70124 * 11 9 7 31 31 H 1.09004 * 109.46298 * 58.67174 * 11 9 7 32 32 H 1.09000 * 109.49733 * 181.31053 * 12 11 9 33 33 H 1.09000 * 109.50116 * 301.37796 * 12 11 9 34 34 H 1.09003 * 109.50819 * 185.70371 * 13 12 11 35 35 H 1.09005 * 109.43147 * 65.42517 * 13 12 11 36 36 H 0.96998 * 119.99837 * 5.13244 * 17 15 14 37 37 H 0.97003 * 120.00259 * 355.07036 * 18 17 15 38 38 H 1.09005 * 110.96860 * 262.53453 * 23 21 19 39 39 H 1.09002 * 110.97317 * 26.29280 * 23 21 19 40 40 H 1.08997 * 110.48397 * 216.52401 * 24 23 21 41 41 H 1.09001 * 110.60081 * 93.93101 * 24 23 21 42 42 H 0.96998 * 124.34712 * 180.42527 * 27 25 24 43 43 H 1.09000 * 109.59323 * 66.42494 * 28 14 13 44 44 H 1.08996 * 109.58635 * 186.71114 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5582 0.8908 11 6 2.2449 -3.6628 -0.0029 12 6 1.4810 -4.9885 0.0303 13 6 0.6026 -5.0988 -1.2146 14 7 -0.2556 -3.9094 -1.3016 15 6 -1.5923 -4.0344 -1.4205 16 8 -2.2833 -3.0469 -1.5812 17 7 -2.1630 -5.2539 -1.3613 18 7 -3.5376 -5.3960 -1.5918 19 6 -4.0900 -6.6245 -1.6367 20 8 -3.3980 -7.6068 -1.4726 21 6 -5.5675 -6.7775 -1.8907 22 1 -6.1231 -6.0042 -1.3603 23 6 -5.8598 -6.7043 -3.4059 24 6 -7.0190 -7.7170 -3.5527 25 6 -6.8412 -8.6568 -2.3807 26 8 -7.3633 -9.7468 -2.2789 27 7 -6.0202 -8.1082 -1.4685 28 6 0.3705 -2.5813 -1.2503 29 1 -0.4850 0.8400 0.0004 30 1 2.8542 -3.6174 -0.9055 31 1 2.8889 -3.5930 0.8738 32 1 2.1897 -5.8164 0.0514 33 1 0.8531 -5.0245 0.9206 34 1 -0.0175 -5.9925 -1.1446 35 1 1.2350 -5.1587 -2.1005 36 1 -1.6221 -6.0333 -1.1591 37 1 -4.0911 -4.6103 -1.7231 38 1 -6.1782 -5.7024 -3.6938 39 1 -4.9920 -7.0179 -3.9862 40 1 -6.9339 -8.2604 -4.4937 41 1 -7.9817 -7.2094 -3.4921 42 1 -5.7602 -8.5369 -0.6382 43 1 0.9835 -2.4316 -2.1391 44 1 -0.4027 -1.8143 -1.2064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334930607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:33 Heat of formation + Delta-G solvation = -58.926930 kcal Electronic energy + Delta-G solvation = -27642.847953 eV Core-core repulsion = 23596.639185 eV Total energy + Delta-G solvation = -4046.208768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23156 -40.15529 -39.10394 -37.13905 -36.50842 -35.22549 -33.59330 -32.14152 -31.78677 -31.09817 -29.80156 -28.24496 -25.16362 -24.61795 -23.20617 -21.95926 -21.45579 -21.00015 -20.69729 -19.21028 -18.26247 -17.98023 -17.27189 -17.18675 -16.27395 -15.96448 -15.60331 -15.44547 -14.95971 -14.58622 -14.46573 -14.15773 -14.05352 -13.89711 -13.66639 -13.59346 -13.18150 -12.96203 -12.68185 -12.53285 -12.35612 -12.04570 -11.65341 -11.25872 -11.07220 -10.97392 -10.60713 -10.57864 -10.50891 -10.30498 -10.27491 -9.98869 -9.83474 -9.55981 -9.19629 -9.06719 -8.52355 -8.41831 -7.80443 -6.06081 -4.14690 1.57837 2.04966 2.23502 2.91445 3.28119 3.34385 3.35629 3.49016 3.56142 3.82160 3.85744 4.05063 4.36711 4.38595 4.46885 4.63139 4.86275 5.15138 5.18660 5.24369 5.28309 5.38878 5.40325 5.51738 5.89039 6.04944 6.21439 6.22949 6.30967 6.54101 6.58485 6.61170 6.67142 6.78312 6.89450 6.98981 7.15639 7.35485 7.63291 7.78856 7.81278 7.86115 7.95167 8.25150 8.32347 8.87602 8.94099 9.51128 10.99269 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.002474 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.293147 B =11316.662501 C =12092.203933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.112 3.888 14 N -0.610 5.610 15 C 0.706 3.294 16 O -0.581 6.581 17 N -0.553 5.553 18 N -0.494 5.494 19 C 0.500 3.500 20 O -0.536 6.536 21 C 0.127 3.873 22 H 0.114 0.886 23 C -0.124 4.124 24 C -0.154 4.154 25 C 0.524 3.476 26 O -0.530 6.530 27 N -0.708 5.708 28 C 0.129 3.871 29 H 0.264 0.736 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.424 0.576 37 H 0.433 0.567 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.417 0.583 43 H 0.045 0.955 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 -12.132 -5.907 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.174 4.174 13 C -0.012 4.012 14 N -0.347 5.347 15 C 0.407 3.593 16 O -0.457 6.457 17 N -0.310 5.310 18 N -0.241 5.241 19 C 0.283 3.717 20 O -0.411 6.411 21 C 0.016 3.984 22 H 0.132 0.868 23 C -0.162 4.162 24 C -0.194 4.194 25 C 0.311 3.689 26 O -0.406 6.406 27 N -0.364 5.364 28 C 0.009 3.991 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.268 0.732 37 H 0.276 0.724 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.257 0.743 43 H 0.063 0.937 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.510 -12.469 -5.979 17.369 hybrid contribution 0.801 0.762 0.532 1.227 sum -9.710 -11.707 -5.446 16.155 Atomic orbital electron populations 1.69863 1.05744 1.27033 1.49185 1.25052 0.94908 0.99304 0.94744 0.86633 0.79571 0.83048 0.78615 1.20208 1.21251 1.20284 1.21030 0.92922 0.90015 1.52008 0.92309 1.19004 0.92649 0.92372 0.94018 0.95246 1.21626 0.98565 0.93855 1.00784 1.21895 0.98718 0.99433 0.97307 1.21515 0.93531 0.86894 0.99243 1.47778 1.02314 1.09555 1.75030 1.15696 0.83112 0.81532 0.78912 1.90941 1.61474 1.35868 1.57430 1.44141 0.97033 1.10541 1.79297 1.44461 0.98352 1.09417 1.71873 1.20837 0.90260 0.82110 0.78467 1.90764 1.62729 1.37527 1.50056 1.21420 0.90880 0.87641 0.98468 0.86830 1.22685 0.99593 1.01909 0.92010 1.22382 1.00621 0.97406 0.99030 1.20832 0.77551 0.86146 0.84418 1.90783 1.50221 1.20781 1.78776 1.45932 1.48772 1.18062 1.23663 1.22346 0.98394 0.79713 0.98647 0.92550 0.93011 0.92848 0.91946 0.92072 0.92143 0.91415 0.73173 0.72442 0.87480 0.89016 0.87382 0.87042 0.74292 0.93655 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 11.39 55.43 0.63 -24.03 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.54 8.56 -34.44 -0.29 -13.84 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.91 2.25 -91.65 -0.21 0.71 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.07 5.11 -26.69 -0.14 -2.21 16 12 C -0.14 -2.04 6.06 -26.83 -0.16 -2.21 16 13 C 0.11 1.64 6.40 -3.93 -0.03 1.61 16 14 N -0.61 -11.40 2.98 -178.76 -0.53 -11.94 16 15 C 0.71 13.15 8.41 -86.92 -0.73 12.42 16 16 O -0.58 -12.82 15.63 5.29 0.08 -12.74 16 17 N -0.55 -8.01 6.15 27.63 0.17 -7.84 16 18 N -0.49 -5.65 6.26 31.22 0.20 -5.46 16 19 C 0.50 5.14 7.13 -10.98 -0.08 5.07 16 20 O -0.54 -7.40 16.42 5.56 0.09 -7.31 16 21 C 0.13 0.83 3.92 -68.16 -0.27 0.56 16 22 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 23 C -0.12 -0.58 6.67 -25.10 -0.17 -0.75 16 24 C -0.15 -0.83 6.86 -26.74 -0.18 -1.01 16 25 C 0.52 5.07 8.43 -10.86 -0.09 4.97 16 26 O -0.53 -7.44 18.03 5.55 0.10 -7.34 16 27 N -0.71 -5.95 5.47 -53.88 -0.29 -6.24 16 28 C 0.13 2.94 5.39 -3.71 -0.02 2.92 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.73 5.58 -51.93 -0.29 0.44 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.42 5.74 5.50 -182.60 -1.00 4.73 16 37 H 0.43 4.40 8.01 -182.60 -1.46 2.94 16 38 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.52 7.91 -51.93 -0.41 0.11 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.42 3.60 8.96 -40.82 -0.37 3.23 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.12 3.34 5.16 -51.93 -0.27 3.07 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -34.76 360.42 -9.60 -44.36 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.99 Total: 7.72 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -2.46 Total: 9.83 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.17 Total: -55.52 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: 0.27 Total: -27.38 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.76 -9.60 -44.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334930607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.570 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds