Wall clock time and date at job start Tue Mar 31 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99656 * 2 1 4 4 H 1.48500 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47066 * 299.99771 * 3 2 1 6 6 H 1.48494 * 109.47558 * 59.99878 * 3 2 1 7 7 C 1.37874 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00019 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52740 * 60.07726 * 9 7 2 11 11 C 1.53035 * 109.49934 * 180.16449 * 9 7 2 12 12 C 1.53040 * 109.53908 * 181.31658 * 11 9 7 13 13 C 1.53629 * 109.24027 * 298.50732 * 12 11 9 14 14 N 1.46921 * 108.54372 * 54.85534 * 13 12 11 15 15 C 1.34783 * 120.62992 * 126.36746 * 14 13 12 16 16 O 1.21587 * 119.99836 * 185.00865 * 15 14 13 17 17 N 1.34772 * 119.99604 * 5.00895 * 15 14 13 18 18 N 1.40108 * 119.99723 * 185.15369 * 17 15 14 19 19 C 1.34770 * 119.99933 * 174.99238 * 18 17 15 20 20 O 1.21283 * 119.99926 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99982 * 179.97438 * 19 18 17 22 22 H 1.09001 * 110.28321 * 39.47692 * 21 19 18 23 23 C 1.54481 * 110.24299 * 277.50433 * 21 19 18 24 24 C 1.54632 * 101.76276 * 266.41129 * 23 21 19 25 25 C 1.51277 * 104.19784 * 335.20686 * 24 23 21 26 26 O 1.21284 * 124.94352 * 196.27491 * 25 24 23 27 27 N 1.34423 * 110.11563 * 16.25107 * 25 24 23 28 28 C 1.46923 * 118.73751 * 306.09781 * 14 13 12 29 29 H 0.97006 * 120.00045 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.45807 * 301.33008 * 11 9 7 31 31 H 1.08995 * 109.46437 * 61.29369 * 11 9 7 32 32 H 1.08999 * 109.50219 * 58.57888 * 12 11 9 33 33 H 1.09004 * 109.49921 * 178.64677 * 12 11 9 34 34 H 1.09007 * 109.73824 * 295.11668 * 13 12 11 35 35 H 1.09006 * 109.66392 * 174.55008 * 13 12 11 36 36 H 0.97001 * 120.00592 * 5.15590 * 17 15 14 37 37 H 0.96996 * 119.99552 * 354.99100 * 18 17 15 38 38 H 1.08997 * 110.97294 * 24.53248 * 23 21 19 39 39 H 1.09008 * 110.96538 * 148.29842 * 23 21 19 40 40 H 1.09001 * 110.48498 * 216.52766 * 24 23 21 41 41 H 1.09003 * 110.59759 * 93.94438 * 24 23 21 42 42 H 0.97002 * 124.34493 * 180.43057 * 27 25 24 43 43 H 1.09002 * 109.58299 * 173.64819 * 28 14 13 44 44 H 1.09000 * 109.58881 * 293.92525 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6255 -2.5586 -0.8901 11 6 2.2451 -3.6627 0.0053 12 6 1.4812 -4.9884 -0.0278 13 6 0.6029 -5.0982 1.2278 14 7 -0.2564 -3.9088 1.3024 15 6 -1.5931 -4.0337 1.4214 16 8 -2.3011 -3.0457 1.3905 17 7 -2.1448 -5.2537 1.5745 18 7 -3.5386 -5.3953 1.5898 19 6 -4.0907 -6.6237 1.6413 20 8 -3.3809 -7.6066 1.6749 21 6 -5.5899 -6.7760 1.6583 22 1 -6.0506 -6.0547 0.9834 23 6 -6.1302 -6.5863 3.0931 24 6 -6.1753 -8.0437 3.6081 25 6 -6.2942 -8.8777 2.3516 26 8 -6.6363 -10.0409 2.3197 27 7 -5.9660 -8.1419 1.2756 28 6 0.3698 -2.5806 1.2509 29 1 -0.4850 0.8401 -0.0004 30 1 2.8898 -3.5932 -0.8708 31 1 2.8537 -3.6168 0.9083 32 1 0.8534 -5.0245 -0.9181 33 1 2.1900 -5.8163 -0.0486 34 1 1.2340 -5.1493 2.1152 35 1 -0.0163 -5.9931 1.1653 36 1 -1.5770 -6.0339 1.6742 37 1 -4.1062 -4.6092 1.5633 38 1 -5.4472 -5.9825 3.6905 39 1 -7.1274 -6.1464 3.0794 40 1 -7.0434 -8.1948 4.2498 41 1 -5.2585 -8.2896 4.1440 42 1 -5.9767 -8.4715 0.3633 43 1 -0.4035 -1.8138 1.2036 44 1 0.9801 -2.4295 2.1412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334930609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:36 Heat of formation + Delta-G solvation = -86.135807 kcal Electronic energy + Delta-G solvation = -27779.893973 eV Core-core repulsion = 23732.505339 eV Total energy + Delta-G solvation = -4047.388633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10610 -41.36524 -40.04636 -38.54504 -37.32707 -36.36900 -35.34584 -33.69901 -32.51181 -32.09688 -31.35654 -28.95301 -27.00127 -26.06511 -24.05679 -23.48266 -22.42612 -22.01842 -21.55715 -20.57204 -19.38392 -19.00289 -18.39972 -18.35845 -17.87212 -16.86975 -16.75512 -16.49678 -16.23857 -15.93416 -15.81483 -15.24777 -15.14432 -15.02859 -14.73383 -14.52413 -14.35834 -14.27296 -14.00354 -13.63218 -13.57324 -12.89116 -12.70991 -12.59643 -12.41660 -12.29774 -12.25125 -12.21140 -11.91851 -11.64004 -11.55561 -11.37438 -11.05764 -10.96611 -10.86293 -10.49996 -10.28079 -9.73870 -9.18120 -8.07885 -6.24123 0.53626 1.24746 1.42497 1.45059 1.50994 1.55940 2.09027 2.19595 2.42030 2.48711 3.03519 3.20647 3.28901 3.45230 3.67240 3.90074 3.98118 4.10510 4.19301 4.26384 4.43744 4.58855 4.70173 4.77936 4.80228 4.81737 4.93994 5.03813 5.10272 5.13335 5.26330 5.28630 5.49309 5.53031 5.60033 5.63272 5.73338 5.89242 5.93281 6.03040 6.26372 6.37777 6.86364 6.88219 6.92364 7.12854 7.45424 7.55671 8.95509 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.002536 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.658814 B =11037.562882 C =11781.259338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.038 3.962 10 H -0.013 1.013 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.107 3.893 14 N -0.616 5.616 15 C 0.703 3.297 16 O -0.621 6.621 17 N -0.542 5.542 18 N -0.493 5.493 19 C 0.498 3.502 20 O -0.571 6.571 21 C 0.130 3.870 22 H 0.163 0.837 23 C -0.111 4.111 24 C -0.156 4.156 25 C 0.518 3.482 26 O -0.583 6.583 27 N -0.703 5.703 28 C 0.144 3.856 29 H 0.260 0.740 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.430 0.570 37 H 0.439 0.561 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.417 0.583 43 H 0.083 0.917 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.504 -12.628 6.254 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.006 0.994 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.015 4.015 14 N -0.353 5.353 15 C 0.404 3.596 16 O -0.501 6.501 17 N -0.298 5.298 18 N -0.242 5.242 19 C 0.284 3.716 20 O -0.448 6.448 21 C 0.019 3.981 22 H 0.180 0.820 23 C -0.149 4.149 24 C -0.196 4.196 25 C 0.306 3.694 26 O -0.463 6.463 27 N -0.357 5.357 28 C 0.021 3.979 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.275 0.725 37 H 0.283 0.717 38 H 0.126 0.874 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.257 0.743 43 H 0.101 0.899 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.806 -13.063 6.342 18.101 hybrid contribution 0.673 0.932 -0.773 1.385 sum -10.132 -12.132 5.569 16.759 Atomic orbital electron populations 1.70076 1.07190 1.27172 1.50540 1.25842 0.95586 1.02676 0.94659 0.85551 0.79237 0.79730 0.77403 1.18734 1.21060 1.20744 1.21514 0.93269 0.91400 1.51060 0.92064 1.18922 0.93077 0.93659 0.92507 0.99436 1.21517 0.97714 0.93966 1.01117 1.21967 0.98928 0.98493 0.96971 1.21999 0.93671 0.86116 0.99749 1.47612 1.03210 1.09410 1.75028 1.15764 0.83059 0.82200 0.78608 1.90919 1.61249 1.37625 1.60276 1.43806 0.96459 1.08915 1.80603 1.44784 0.94339 1.10397 1.74699 1.22068 0.92537 0.80837 0.76188 1.90752 1.63948 1.38594 1.51509 1.21714 0.87237 0.86313 1.02790 0.82006 1.22795 1.05745 0.95986 0.90357 1.22430 1.06561 0.94987 0.95586 1.21509 0.73895 0.85987 0.87976 1.90735 1.50161 1.17994 1.87392 1.45984 1.66789 1.12744 1.10163 1.21724 0.97030 0.81135 0.97969 0.93070 0.93042 0.92085 0.93314 0.87992 0.89329 0.89196 0.72456 0.71703 0.87398 0.84474 0.85472 0.87925 0.74333 0.89853 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.08 11.39 21.45 0.24 -52.84 16 2 C 0.01 0.66 5.30 84.65 0.45 1.11 16 3 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -28.34 8.56 25.60 0.22 -28.12 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.04 1.82 2.25 -11.46 -0.03 1.80 16 10 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 11 C -0.11 -3.89 5.10 30.62 0.16 -3.73 16 12 C -0.13 -3.58 6.10 30.82 0.19 -3.39 16 13 C 0.11 2.89 6.38 86.51 0.55 3.44 16 14 N -0.62 -22.97 2.97 -836.04 -2.48 -25.45 16 15 C 0.70 26.17 8.41 179.05 1.51 27.68 16 16 O -0.62 -28.26 15.61 -3.99 -0.06 -28.32 16 17 N -0.54 -15.01 6.12 -184.75 -1.13 -16.14 16 18 N -0.49 -10.47 6.26 -173.53 -1.09 -11.55 16 19 C 0.50 9.31 7.11 87.66 0.62 9.93 16 20 O -0.57 -15.27 16.43 -3.04 -0.05 -15.32 16 21 C 0.13 1.28 3.93 44.70 0.18 1.46 16 22 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 23 C -0.11 -0.61 6.69 31.65 0.21 -0.40 16 24 C -0.16 -1.76 6.85 30.59 0.21 -1.55 16 25 C 0.52 10.28 8.43 87.90 0.74 11.02 16 26 O -0.58 -17.33 18.03 -3.04 -0.05 -17.38 16 27 N -0.70 -10.42 5.47 -442.97 -2.42 -12.85 16 28 C 0.14 6.73 5.41 86.36 0.47 7.20 16 29 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.09 1.94 5.74 -2.38 -0.01 1.93 16 36 H 0.43 10.75 5.60 -213.31 -1.19 9.56 16 37 H 0.44 8.21 8.01 -213.32 -1.71 6.50 16 38 H 0.11 0.51 7.89 -2.39 -0.02 0.49 16 39 H 0.14 -0.08 8.14 -2.38 -0.02 -0.09 16 40 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.42 5.77 8.96 -92.71 -0.83 4.94 16 43 H 0.08 4.68 5.11 -2.39 -0.01 4.67 16 44 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -82.23 360.57 -2.21 -84.44 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -2.67 Total: 24.10 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 5.47 Total: 26.45 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -6.87 Total: -118.82 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -0.17 Total: -61.02 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -82.23 -2.21 -84.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334930609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.700 kcal (2) G-P(sol) polarization free energy of solvation -82.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds