Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.06891 * 2 1 4 4 C 1.40403 * 107.86792 * 179.75684 * 3 2 1 5 5 N 1.40193 * 125.97569 * 180.22333 * 4 3 2 6 6 C 1.34779 * 119.99651 * 359.97438 * 5 4 3 7 7 O 1.21584 * 120.00443 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99590 * 180.02562 * 6 5 4 9 9 C 1.47021 * 125.64834 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.27027 * 181.02288 * 9 8 6 11 11 H 1.08999 * 110.72198 * 263.82807 * 10 9 8 12 12 O 1.42901 * 110.72192 * 140.55126 * 10 9 8 13 13 C 1.55160 * 102.94339 * 22.19320 * 10 9 8 14 14 H 1.09000 * 111.00263 * 82.56818 * 13 10 9 15 15 C 1.53001 * 111.00702 * 206.42520 * 13 10 9 16 16 O 1.42897 * 109.47031 * 184.99748 * 15 13 10 17 17 C 1.47420 * 125.64509 * 179.71649 * 8 6 5 18 18 N 1.31216 * 108.05251 * 0.24078 * 4 3 2 19 19 N 1.34961 * 126.07182 * 180.17442 * 2 1 3 20 20 C 1.46502 * 125.97641 * 359.97438 * 19 2 1 21 21 C 1.50697 * 109.47635 * 270.28652 * 20 19 2 22 22 H 1.08002 * 119.99714 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00363 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00433 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99843 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47074 * 90.00015 * 25 23 21 27 27 H 1.48499 * 109.47145 * 209.99704 * 25 23 21 28 28 H 1.48498 * 109.47373 * 330.00326 * 25 23 21 29 29 H 1.08998 * 109.47332 * 90.02585 * 1 2 3 30 30 H 1.09000 * 109.47129 * 210.02203 * 1 2 3 31 31 H 1.09001 * 109.47359 * 330.02562 * 1 2 3 32 32 H 1.08002 * 126.07038 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00000 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.88524 * 300.43648 * 9 8 6 35 35 H 1.08995 * 109.88626 * 61.45534 * 9 8 6 36 36 H 0.96706 * 113.99545 * 61.45591 * 12 10 9 37 37 H 1.09001 * 109.46659 * 305.00050 * 15 13 10 38 38 H 1.08998 * 109.46838 * 64.99750 * 15 13 10 39 39 H 0.96703 * 114.00028 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.36998 * 274.74674 * 17 8 6 41 41 H 1.09001 * 110.37146 * 37.07245 * 17 8 6 42 42 H 1.09001 * 109.47003 * 30.28973 * 20 19 2 43 43 H 1.09004 * 109.46672 * 150.28303 * 20 19 2 44 44 H 0.97000 * 120.00675 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0057 5 7 4.7737 1.4752 0.0119 6 6 4.6369 2.8160 0.0124 7 8 3.5277 3.3140 0.0069 8 7 5.7297 3.6049 0.0179 9 6 7.1237 3.1377 0.0232 10 6 8.0262 4.3891 0.0548 11 1 8.3506 4.6561 -0.9510 12 8 9.1506 4.1801 0.9115 13 6 7.0881 5.4795 0.6366 14 1 7.0546 5.4260 1.7247 15 6 7.5128 6.8737 0.1710 16 8 6.7026 7.8585 0.8157 17 6 5.7251 5.0790 0.0131 18 7 3.6336 -0.6575 0.0037 19 7 2.3016 -1.0909 -0.0033 20 6 1.8501 -2.4845 -0.0070 21 6 1.6890 -2.9643 1.4124 22 1 1.9013 -2.2976 2.2351 23 6 1.2696 -4.2540 1.6609 24 7 1.1294 -4.6728 2.8996 25 14 0.9017 -5.4069 0.2379 26 1 2.1360 -6.1444 -0.1334 27 1 -0.1497 -6.3741 0.6435 28 1 0.4264 -4.6189 -0.9276 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.9720 2.1212 0.0004 33 1 5.6586 1.0779 0.0152 34 1 7.3065 2.5265 0.9070 35 1 7.3234 2.5565 -0.8770 36 1 9.7277 3.4556 0.6334 37 1 8.5592 7.0393 0.4276 38 1 7.3871 6.9501 -0.9090 39 1 6.9171 8.7682 0.5675 40 1 5.6469 5.4549 -1.0070 41 1 4.9042 5.4579 0.6219 42 1 0.8937 -2.5552 -0.5252 43 1 2.5870 -3.1038 -0.5185 44 1 0.8340 -5.5800 3.0744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466048605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -32.871746 kcal Electronic energy + Delta-G solvation = -27202.720091 eV Core-core repulsion = 23157.641161 eV Total energy + Delta-G solvation = -4045.078930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97478 -40.24215 -38.71672 -37.01857 -35.85722 -34.86159 -33.34569 -32.19080 -31.29262 -30.99575 -28.96649 -27.28455 -26.40182 -25.96159 -23.52185 -22.54484 -21.26995 -20.82048 -19.71584 -19.35669 -18.20852 -17.60905 -17.49589 -17.10350 -16.72247 -16.06670 -15.67526 -15.35525 -15.13525 -14.72099 -14.51850 -14.09729 -13.97995 -13.85111 -13.56251 -13.20501 -13.13973 -12.72243 -12.59812 -12.37497 -12.27934 -12.13704 -11.89382 -11.64888 -11.56884 -11.22841 -11.13922 -10.81082 -10.74365 -10.58539 -10.42545 -10.06094 -9.94928 -9.72587 -9.56761 -8.93487 -8.77893 -7.96883 -7.43027 -6.25535 -4.28720 2.16971 2.56650 3.02483 3.15578 3.20968 3.22214 3.30481 3.41799 3.73447 3.79384 3.87715 4.15475 4.21916 4.32067 4.43834 4.70949 4.76580 4.89222 5.02347 5.02718 5.15753 5.22687 5.32416 5.35930 5.55854 5.64909 5.74046 5.83571 5.91528 6.05725 6.21931 6.40609 6.49342 6.52196 6.60845 6.81804 6.96008 7.07067 7.19034 7.29745 7.45589 7.82161 7.88590 8.32442 8.52043 8.60527 8.80505 9.29601 10.86971 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002384 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.470586 B =11740.735059 C =12367.148670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.096 3.904 3 C -0.285 4.285 4 C 0.286 3.714 5 N -0.641 5.641 6 C 0.733 3.267 7 O -0.559 6.559 8 N -0.634 5.634 9 C 0.064 3.936 10 C 0.103 3.897 11 H 0.080 0.920 12 O -0.554 6.554 13 C -0.096 4.096 14 H 0.105 0.895 15 C 0.089 3.911 16 O -0.570 6.570 17 C 0.138 3.862 18 N -0.321 5.321 19 N -0.318 5.318 20 C 0.232 3.768 21 C -0.541 4.541 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.886 5.886 25 Si 0.874 3.126 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.405 0.595 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.384 0.616 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.382 0.618 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.334 20.892 -9.653 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.316 4.316 4 C 0.032 3.968 5 N -0.291 5.291 6 C 0.434 3.566 7 O -0.433 6.433 8 N -0.374 5.374 9 C -0.060 4.060 10 C 0.043 3.957 11 H 0.098 0.902 12 O -0.359 6.359 13 C -0.115 4.115 14 H 0.123 0.877 15 C 0.011 3.989 16 O -0.376 6.376 17 C 0.015 3.985 18 N -0.152 5.152 19 N -0.100 5.100 20 C 0.113 3.887 21 C -0.579 4.579 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.523 5.523 25 Si 0.700 3.300 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.189 1.189 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.180 0.820 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.229 0.771 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.535 19.830 -8.950 25.623 hybrid contribution 0.552 -0.443 -1.082 1.292 sum 14.087 19.388 -10.031 25.980 Atomic orbital electron populations 1.20402 0.87818 1.04200 1.02442 1.21044 0.94916 0.86892 1.00641 1.21260 0.89634 0.99902 1.20829 1.18647 0.86580 0.89200 1.02368 1.41372 1.07602 1.03549 1.76545 1.15069 0.83298 0.80162 0.78069 1.90888 1.22594 1.73297 1.56528 1.47320 1.04025 1.06903 1.79188 1.22821 0.82380 0.98009 1.02838 1.22699 0.85888 0.93282 0.93794 0.90236 1.86579 1.38098 1.57552 1.53681 1.22424 0.93541 0.92460 1.03050 0.87714 1.22035 0.94036 0.87196 0.95619 1.86508 1.61734 1.18624 1.70706 1.22155 0.97443 0.77836 1.01056 1.77243 0.99504 1.08359 1.30049 1.48496 1.01134 1.06978 1.53435 1.19989 0.95279 0.73766 0.99657 1.21195 1.47282 0.98992 0.90462 0.90092 1.24812 0.94498 0.97449 0.95799 1.69872 1.45650 1.18069 1.18753 0.86889 0.78948 0.81451 0.82711 1.19667 1.20552 1.18852 0.91100 0.89839 0.90336 0.82046 0.75965 0.90154 0.90761 0.76724 0.92583 0.93159 0.77070 0.91137 0.89039 0.93204 0.93692 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.00 0.36 -1.18 16 2 C 0.10 2.03 6.92 -82.28 -0.57 1.46 16 3 C -0.29 -6.01 9.52 -39.83 -0.38 -6.38 16 4 C 0.29 5.95 8.11 -154.36 -1.25 4.70 16 5 N -0.64 -10.51 5.41 -15.50 -0.08 -10.60 16 6 C 0.73 11.69 8.46 -86.91 -0.74 10.96 16 7 O -0.56 -10.75 13.72 5.29 0.07 -10.68 16 8 N -0.63 -7.31 3.32 -176.10 -0.59 -7.90 16 9 C 0.06 0.49 5.92 -3.06 -0.02 0.47 16 10 C 0.10 0.63 3.80 -24.89 -0.09 0.53 16 11 H 0.08 0.33 8.04 -51.93 -0.42 -0.09 16 12 O -0.55 -3.41 13.39 -35.23 -0.47 -3.88 16 13 C -0.10 -0.75 3.04 -88.35 -0.27 -1.02 16 14 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 15 C 0.09 0.53 6.50 37.16 0.24 0.78 16 16 O -0.57 -4.09 13.63 -35.23 -0.48 -4.57 16 17 C 0.14 1.37 6.35 -2.41 -0.02 1.35 16 18 N -0.32 -7.42 12.59 31.44 0.40 -7.02 16 19 N -0.32 -7.49 3.59 -58.33 -0.21 -7.70 16 20 C 0.23 5.63 4.87 -5.19 -0.03 5.60 16 21 C -0.54 -15.25 9.94 -34.44 -0.34 -15.59 16 22 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 25 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.52 7.73 -51.93 -0.40 1.12 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.16 3.36 5.91 -52.49 -0.31 3.05 16 33 H 0.41 5.43 7.81 -40.82 -0.32 5.11 16 34 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 0.74 9.11 45.56 0.42 1.15 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.22 7.96 -51.93 -0.41 -0.19 16 39 H 0.38 0.95 9.12 45.56 0.42 1.37 16 40 H 0.07 0.61 7.91 -51.93 -0.41 0.20 16 41 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 42 H 0.05 1.12 6.72 -51.93 -0.35 0.78 16 43 H 0.05 1.08 7.57 -51.93 -0.39 0.69 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -37.50 367.66 -7.64 -45.14 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.72 Total: 8.04 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.20 Total: 3.76 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.29 Total: -58.89 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.88 Total: -19.13 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.50 -7.64 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466048605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.271 kcal (2) G-P(sol) polarization free energy of solvation -37.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds