Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.06891 * 2 1 4 4 C 1.40403 * 107.86792 * 179.75684 * 3 2 1 5 5 N 1.40193 * 125.97569 * 180.22333 * 4 3 2 6 6 C 1.34779 * 119.99651 * 359.97438 * 5 4 3 7 7 O 1.21584 * 120.00443 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99590 * 180.02562 * 6 5 4 9 9 C 1.47021 * 125.64834 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.27027 * 181.02288 * 9 8 6 11 11 H 1.08999 * 110.72198 * 263.82807 * 10 9 8 12 12 O 1.42901 * 110.72192 * 140.55126 * 10 9 8 13 13 C 1.55160 * 102.94339 * 22.19320 * 10 9 8 14 14 H 1.09000 * 111.00263 * 82.56818 * 13 10 9 15 15 C 1.53001 * 111.00702 * 206.42520 * 13 10 9 16 16 O 1.42897 * 109.47031 * 184.99748 * 15 13 10 17 17 C 1.47420 * 125.64509 * 179.71649 * 8 6 5 18 18 N 1.31216 * 108.05251 * 0.24078 * 4 3 2 19 19 N 1.34961 * 126.07182 * 180.17442 * 2 1 3 20 20 C 1.46502 * 125.97641 * 359.97438 * 19 2 1 21 21 C 1.50697 * 109.47635 * 270.28652 * 20 19 2 22 22 H 1.08002 * 119.99714 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00363 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00433 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99843 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47074 * 90.00015 * 25 23 21 27 27 H 1.48499 * 109.47145 * 209.99704 * 25 23 21 28 28 H 1.48498 * 109.47373 * 330.00326 * 25 23 21 29 29 H 1.08998 * 109.47332 * 90.02585 * 1 2 3 30 30 H 1.09000 * 109.47129 * 210.02203 * 1 2 3 31 31 H 1.09001 * 109.47359 * 330.02562 * 1 2 3 32 32 H 1.08002 * 126.07038 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00000 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.88524 * 300.43648 * 9 8 6 35 35 H 1.08995 * 109.88626 * 61.45534 * 9 8 6 36 36 H 0.96706 * 113.99545 * 61.45591 * 12 10 9 37 37 H 1.09001 * 109.46659 * 305.00050 * 15 13 10 38 38 H 1.08998 * 109.46838 * 64.99750 * 15 13 10 39 39 H 0.96703 * 114.00028 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.36998 * 274.74674 * 17 8 6 41 41 H 1.09001 * 110.37146 * 37.07245 * 17 8 6 42 42 H 1.09001 * 109.47003 * 30.28973 * 20 19 2 43 43 H 1.09004 * 109.46672 * 150.28303 * 20 19 2 44 44 H 0.97000 * 120.00675 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0057 5 7 4.7737 1.4752 0.0119 6 6 4.6369 2.8160 0.0124 7 8 3.5277 3.3140 0.0069 8 7 5.7297 3.6049 0.0179 9 6 7.1237 3.1377 0.0232 10 6 8.0262 4.3891 0.0548 11 1 8.3506 4.6561 -0.9510 12 8 9.1506 4.1801 0.9115 13 6 7.0881 5.4795 0.6366 14 1 7.0546 5.4260 1.7247 15 6 7.5128 6.8737 0.1710 16 8 6.7026 7.8585 0.8157 17 6 5.7251 5.0790 0.0131 18 7 3.6336 -0.6575 0.0037 19 7 2.3016 -1.0909 -0.0033 20 6 1.8501 -2.4845 -0.0070 21 6 1.6890 -2.9643 1.4124 22 1 1.9013 -2.2976 2.2351 23 6 1.2696 -4.2540 1.6609 24 7 1.1294 -4.6728 2.8996 25 14 0.9017 -5.4069 0.2379 26 1 2.1360 -6.1444 -0.1334 27 1 -0.1497 -6.3741 0.6435 28 1 0.4264 -4.6189 -0.9276 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.9720 2.1212 0.0004 33 1 5.6586 1.0779 0.0152 34 1 7.3065 2.5265 0.9070 35 1 7.3234 2.5565 -0.8770 36 1 9.7277 3.4556 0.6334 37 1 8.5592 7.0393 0.4276 38 1 7.3871 6.9501 -0.9090 39 1 6.9171 8.7682 0.5675 40 1 5.6469 5.4549 -1.0070 41 1 4.9042 5.4579 0.6219 42 1 0.8937 -2.5552 -0.5252 43 1 2.5870 -3.1038 -0.5185 44 1 0.8340 -5.5800 3.0744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466048605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -65.390564 kcal Electronic energy + Delta-G solvation = -27204.130213 eV Core-core repulsion = 23157.641161 eV Total energy + Delta-G solvation = -4046.489052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.41518 -41.41221 -39.65746 -37.50533 -36.63124 -36.32465 -35.26226 -33.49152 -32.81101 -32.39945 -29.64772 -29.05101 -27.90960 -26.89612 -24.64906 -24.00976 -22.50002 -21.55928 -21.21924 -20.69763 -19.23264 -19.06811 -18.42262 -18.06688 -17.85298 -17.35139 -17.04024 -16.58394 -16.16491 -16.10210 -15.77081 -15.40643 -14.95400 -14.76428 -14.60412 -14.52435 -14.23126 -14.01933 -13.87803 -13.70511 -13.62097 -13.39747 -13.26960 -12.87437 -12.82994 -12.57345 -12.28915 -12.14693 -11.82927 -11.76850 -11.65455 -11.46843 -11.38498 -11.01315 -10.90002 -10.86818 -9.93739 -9.59675 -9.07542 -8.40343 -6.51877 0.90264 0.98413 1.35727 1.37893 1.47754 1.57433 1.89969 2.26880 2.28557 2.72748 2.92044 2.98295 3.21369 3.37274 3.79643 3.85257 3.95618 4.07574 4.13790 4.24649 4.35233 4.40705 4.51872 4.54887 4.58319 4.66785 4.72049 4.76070 4.77201 4.80877 4.82697 4.95963 5.00160 5.12052 5.15273 5.22953 5.33638 5.72809 5.85329 5.98982 6.36286 6.50560 6.54428 6.84413 6.95253 6.99538 7.12135 7.27182 8.76413 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002384 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.470586 B =11740.735059 C =12367.148670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.093 3.907 3 C -0.299 4.299 4 C 0.292 3.708 5 N -0.633 5.633 6 C 0.727 3.273 7 O -0.597 6.597 8 N -0.627 5.627 9 C 0.055 3.945 10 C 0.118 3.882 11 H 0.113 0.887 12 O -0.568 6.568 13 C -0.095 4.095 14 H 0.077 0.923 15 C 0.092 3.908 16 O -0.597 6.597 17 C 0.135 3.865 18 N -0.355 5.355 19 N -0.342 5.342 20 C 0.242 3.758 21 C -0.551 4.551 22 H 0.022 0.978 23 C 0.021 3.979 24 N -0.938 5.938 25 Si 0.953 3.047 26 H -0.265 1.265 27 H -0.275 1.275 28 H -0.233 1.233 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.164 0.836 33 H 0.419 0.581 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.404 0.596 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.401 0.599 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.417 21.399 -12.530 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 C -0.330 4.330 4 C 0.037 3.963 5 N -0.284 5.284 6 C 0.428 3.572 7 O -0.475 6.475 8 N -0.366 5.366 9 C -0.067 4.067 10 C 0.058 3.942 11 H 0.131 0.869 12 O -0.377 6.377 13 C -0.114 4.114 14 H 0.096 0.904 15 C 0.014 3.986 16 O -0.406 6.406 17 C 0.013 3.987 18 N -0.185 5.185 19 N -0.125 5.125 20 C 0.122 3.878 21 C -0.590 4.590 22 H 0.040 0.960 23 C -0.179 4.179 24 N -0.576 5.576 25 Si 0.773 3.227 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.156 1.156 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.181 0.819 33 H 0.257 0.743 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.255 0.745 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.251 0.749 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.701 20.394 -11.836 27.787 hybrid contribution 0.319 -0.423 -0.052 0.532 sum 15.021 19.971 -11.888 27.672 Atomic orbital electron populations 1.20547 0.85074 1.04427 1.04557 1.21734 0.96746 0.86244 0.98996 1.21408 0.90025 0.99979 1.21549 1.18935 0.87958 0.88979 1.00420 1.41334 1.07133 1.03550 1.76409 1.15255 0.83941 0.79997 0.77973 1.90846 1.24560 1.73838 1.58263 1.47353 1.04598 1.07351 1.77296 1.23164 0.80254 0.99365 1.03953 1.22646 0.85302 0.91235 0.94986 0.86940 1.86544 1.38208 1.58648 1.54290 1.22392 0.92954 0.94706 1.01386 0.90447 1.22074 0.94188 0.85620 0.96697 1.86463 1.62460 1.20248 1.71442 1.22300 0.97956 0.76683 1.01780 1.77155 0.99867 1.09468 1.32029 1.48441 1.01700 1.07088 1.55246 1.19801 0.96491 0.74516 0.96989 1.21261 1.47768 0.98726 0.91203 0.95974 1.25857 0.93690 0.99219 0.99147 1.70036 1.46866 1.18965 1.21774 0.85655 0.79048 0.78734 0.79222 1.18981 1.19956 1.15563 0.87895 0.91203 0.88435 0.81881 0.74340 0.90483 0.88266 0.74471 0.91481 0.90847 0.74901 0.89279 0.91847 0.90695 0.93212 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.23 0.70 -2.20 16 2 C 0.09 3.93 6.92 41.39 0.29 4.22 16 3 C -0.30 -12.72 9.52 22.11 0.21 -12.51 16 4 C 0.29 12.31 8.11 133.31 1.08 13.40 16 5 N -0.63 -20.73 5.41 -321.23 -1.74 -22.47 16 6 C 0.73 23.24 8.46 179.05 1.51 24.75 16 7 O -0.60 -23.46 13.72 -3.98 -0.05 -23.52 16 8 N -0.63 -13.97 3.32 -829.32 -2.76 -16.73 16 9 C 0.06 0.73 5.92 86.73 0.51 1.25 16 10 C 0.12 1.10 3.80 31.78 0.12 1.22 16 11 H 0.11 0.40 8.04 -2.39 -0.02 0.38 16 12 O -0.57 -5.53 13.39 -148.98 -2.00 -7.52 16 13 C -0.09 -1.37 3.04 -9.32 -0.03 -1.40 16 14 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 15 C 0.09 0.89 6.50 71.98 0.47 1.36 16 16 O -0.60 -7.87 13.63 -148.98 -2.03 -9.90 16 17 C 0.14 2.59 6.35 86.94 0.55 3.14 16 18 N -0.35 -16.64 12.59 -54.43 -0.69 -17.32 16 19 N -0.34 -16.25 3.59 -338.45 -1.22 -17.46 16 20 C 0.24 11.62 4.87 85.63 0.42 12.04 16 21 C -0.55 -32.00 9.94 25.60 0.25 -31.75 16 22 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 23 C 0.02 1.16 5.47 84.65 0.46 1.62 16 24 N -0.94 -57.57 13.96 21.44 0.30 -57.27 16 25 Si 0.95 40.93 27.47 68.60 1.88 42.82 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.07 2.50 7.73 -2.39 -0.02 2.48 16 31 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.16 6.89 5.91 -2.91 -0.02 6.87 16 33 H 0.42 10.99 7.81 -92.71 -0.72 10.27 16 34 H 0.08 1.10 8.06 -2.39 -0.02 1.08 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.40 0.35 9.11 -74.05 -0.67 -0.33 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.39 7.96 -2.39 -0.02 0.37 16 39 H 0.40 1.41 9.12 -74.06 -0.68 0.73 16 40 H 0.09 1.39 7.91 -2.39 -0.02 1.37 16 41 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 42 H 0.08 3.21 6.72 -2.39 -0.02 3.19 16 43 H 0.05 2.33 7.57 -2.38 -0.02 2.31 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -85.90 367.66 -2.80 -88.71 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -1.07 Total: 25.53 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.56 Total: 15.14 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -6.10 Total: -131.26 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -4.08 Total: -40.94 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.88 Total: 42.82 kcal Total: -85.90 -2.80 -88.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466048605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.315 kcal (2) G-P(sol) polarization free energy of solvation -85.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds