Wall clock time and date at job start Tue Mar 31 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35451 * 126.77785 * 2 1 4 4 C 1.41377 * 103.98379 * 180.09597 * 3 2 1 5 5 C 1.50706 * 126.80287 * 179.88676 * 4 3 2 6 6 C 1.50698 * 109.47006 * 124.71199 * 5 4 3 7 7 O 1.21287 * 119.99915 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00104 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00091 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47109 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.46831 * 64.99646 * 10 9 8 12 12 C 1.52998 * 109.47211 * 185.00004 * 10 9 8 13 13 N 1.46906 * 109.47010 * 305.00036 * 10 9 8 14 14 C 1.46898 * 110.99888 * 155.00014 * 13 10 9 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 10 16 16 O 1.21288 * 120.00125 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99549 * 179.97438 * 15 14 13 18 18 C 1.37103 * 120.00062 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99229 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99885 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00123 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46979 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47480 * 120.00092 * 22 20 18 25 25 H 1.48497 * 109.47080 * 240.00247 * 22 20 18 26 26 N 1.30176 * 106.39710 * 359.62649 * 4 3 2 27 27 O 1.20924 * 111.60241 * 0.24497 * 26 4 3 28 28 H 1.08992 * 109.47624 * 180.29780 * 1 2 3 29 29 H 1.09009 * 109.46919 * 300.30020 * 1 2 3 30 30 H 1.09004 * 109.47134 * 60.29518 * 1 2 3 31 31 H 1.07996 * 128.00781 * 359.96745 * 3 2 1 32 32 H 1.08999 * 109.46454 * 4.71263 * 5 4 3 33 33 H 1.08997 * 109.47204 * 244.71352 * 5 4 3 34 34 H 0.97004 * 119.99971 * 0.02562 * 8 6 5 35 35 H 1.08993 * 109.47197 * 60.00229 * 9 8 6 36 36 H 1.08997 * 109.47140 * 299.99817 * 9 8 6 37 37 H 1.09001 * 109.47093 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47121 * 299.99744 * 12 10 9 39 39 H 1.09002 * 109.46901 * 59.99641 * 12 10 9 40 40 H 1.00902 * 110.99923 * 278.95955 * 13 10 9 41 41 H 1.08995 * 109.47296 * 299.99911 * 14 13 10 42 42 H 1.08997 * 109.47334 * 60.00212 * 14 13 10 43 43 H 0.97003 * 120.00664 * 0.02562 * 17 15 14 44 44 H 0.97010 * 119.99812 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.2999 -0.0057 6 6 5.7663 0.8572 1.1609 7 8 5.3539 0.0059 1.9199 8 7 6.9803 1.4073 1.3606 9 6 7.8021 0.9766 2.4943 10 6 9.1212 1.7519 2.4917 11 1 8.9214 2.8093 2.6655 12 6 10.0301 1.2157 3.5995 13 7 9.7841 1.5862 1.1912 14 6 10.6840 2.7131 0.9117 15 6 11.3438 2.5085 -0.4277 16 8 11.0898 1.5209 -1.0844 17 7 12.2162 3.4230 -0.8958 18 6 12.8169 3.2368 -2.1140 19 1 12.5907 2.3574 -2.6987 20 6 13.7159 4.1798 -2.5968 21 7 13.9907 5.2500 -1.8854 22 14 14.5338 3.9264 -4.2570 23 1 14.0590 2.6520 -4.8533 24 1 14.1861 5.0547 -5.1576 25 1 16.0071 3.8706 -4.0796 26 7 3.4763 -0.7565 0.0047 27 8 2.3094 -1.0736 0.0060 28 1 -0.3634 -1.0275 0.0053 29 1 -0.3633 0.5185 0.8874 30 1 -0.3633 0.5093 -0.8927 31 1 2.0346 2.1270 -0.0005 32 1 4.7162 2.3671 0.0783 33 1 5.4547 1.1044 -0.9358 34 1 7.3099 2.0885 0.7537 35 1 8.0073 -0.0905 2.4096 36 1 7.2685 1.1713 3.4246 37 1 10.9700 1.7678 3.5973 38 1 9.5383 1.3388 4.5644 39 1 10.2298 0.1584 3.4256 40 1 10.2794 0.7082 1.1472 41 1 10.1112 3.6403 0.8963 42 1 11.4469 2.7701 1.6880 43 1 12.4197 4.2127 -0.3704 44 1 14.6181 5.9086 -2.2227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491415119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:56 Heat of formation + Delta-G solvation = -18.522545 kcal Electronic energy + Delta-G solvation = -26340.656441 eV Core-core repulsion = 22296.199738 eV Total energy + Delta-G solvation = -4044.456702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.02668 -39.69698 -38.46384 -36.97182 -34.78636 -34.14890 -33.74655 -33.56322 -31.36443 -30.87867 -29.57141 -28.01464 -26.49538 -25.93792 -23.96091 -23.22348 -21.34579 -21.01432 -19.70598 -19.31979 -17.95990 -17.83611 -17.36815 -16.85079 -16.35663 -15.99206 -15.56276 -15.27666 -14.80170 -14.66957 -14.54891 -14.01332 -13.98585 -13.74213 -13.58122 -13.30697 -13.20284 -13.05373 -12.99052 -12.65332 -12.50211 -12.22108 -12.19526 -11.71706 -11.61644 -11.43737 -11.21400 -11.09780 -11.00620 -10.37471 -10.32960 -10.26400 -9.79323 -9.56237 -9.44577 -8.96901 -8.54431 -8.15448 -8.00626 -6.46094 -3.86968 1.36118 2.07317 2.66682 2.97172 3.13318 3.24368 3.25335 3.31618 3.85566 3.97903 4.02189 4.24060 4.28718 4.75724 4.78961 4.80336 4.91089 4.95877 5.02983 5.04083 5.08996 5.17736 5.23689 5.24039 5.28397 5.45232 5.47524 5.60446 5.64033 5.67025 5.73166 5.85580 5.87586 5.96980 6.02381 6.21464 6.49682 7.10455 7.51481 7.54878 7.59749 8.02089 8.22074 8.27905 8.56393 9.13818 9.49633 10.00755 10.71547 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.002148 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.943831 B =13032.724854 C =14411.049740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.041 4.041 3 C -0.230 4.230 4 C 0.030 3.970 5 C -0.064 4.064 6 C 0.514 3.486 7 O -0.538 6.538 8 N -0.711 5.711 9 C 0.135 3.865 10 C 0.068 3.932 11 H 0.084 0.916 12 C -0.181 4.181 13 N -0.664 5.664 14 C 0.050 3.950 15 C 0.439 3.561 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 N -0.336 5.336 27 O 0.103 5.897 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.410 0.590 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.354 0.646 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.568 -2.240 8.751 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.251 4.251 4 C -0.129 4.129 5 C -0.105 4.105 6 C 0.299 3.701 7 O -0.415 6.415 8 N -0.363 5.363 9 C 0.011 3.989 10 C -0.043 4.043 11 H 0.102 0.898 12 C -0.240 4.240 13 N -0.297 5.297 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 N -0.037 5.037 27 O 0.034 5.966 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.188 0.812 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.246 0.754 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.174 0.826 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.536 -4.131 8.449 23.499 hybrid contribution 1.344 1.531 -0.143 2.042 sum -20.192 -2.600 8.306 21.988 Atomic orbital electron populations 1.20311 0.84185 1.04600 1.03927 1.24473 0.96382 0.86379 1.03219 1.22328 0.91135 1.00953 1.10688 1.22797 0.96002 0.90122 1.04005 1.20000 0.90458 1.00372 0.99660 1.20238 0.81895 0.81910 0.86107 1.90730 1.72196 1.31604 1.47013 1.45736 1.16712 1.43099 1.30749 1.21309 0.89724 0.99206 0.88681 1.21854 0.93424 1.00165 0.88811 0.89776 1.22436 1.00302 1.01978 0.99333 1.60184 1.35303 1.05725 1.28451 1.21719 0.95184 0.94939 0.96453 1.19809 0.83814 0.85701 0.88220 1.90539 1.65585 1.30515 1.60007 1.41877 1.37963 1.21118 1.19053 1.19751 1.20628 1.07467 0.95008 0.87866 1.25265 0.97596 0.95268 0.99835 1.69620 1.35629 1.10548 1.38472 0.85803 0.78677 0.78526 0.81370 1.19207 1.20716 1.20767 1.73906 0.96226 1.16255 1.17270 1.84872 1.11415 1.33211 1.67132 0.89958 0.89331 0.89265 0.81209 0.86667 0.86566 0.75380 0.91588 0.91496 0.91910 0.91862 0.91969 0.82611 0.89636 0.93705 0.77489 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.45 36.01 0.38 0.05 16 2 C -0.04 -0.38 7.49 -35.30 -0.26 -0.64 16 3 C -0.23 -2.18 11.05 -39.38 -0.44 -2.61 16 4 C 0.03 0.38 6.10 -82.10 -0.50 -0.12 16 5 C -0.06 -0.69 6.30 -29.03 -0.18 -0.87 16 6 C 0.51 7.04 7.82 -10.99 -0.09 6.95 16 7 O -0.54 -9.54 15.59 5.55 0.09 -9.45 16 8 N -0.71 -8.59 5.39 -60.30 -0.32 -8.91 16 9 C 0.14 1.59 5.37 -4.04 -0.02 1.57 16 10 C 0.07 0.74 2.75 -67.71 -0.19 0.56 16 11 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 12 C -0.18 -1.76 9.16 37.16 0.34 -1.42 16 13 N -0.66 -9.54 5.31 -107.99 -0.57 -10.11 16 14 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 15 C 0.44 9.86 7.82 -10.98 -0.09 9.77 16 16 O -0.58 -15.28 15.78 5.55 0.09 -15.20 16 17 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 19 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 22 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 N -0.34 -5.04 11.46 33.42 0.38 -4.66 16 27 O 0.10 1.32 11.20 17.19 0.19 1.51 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.41 4.59 8.14 -40.82 -0.33 4.26 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 40 H 0.35 5.58 8.17 -39.29 -0.32 5.26 16 41 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 42 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 43 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 44 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -35.55 381.14 -6.39 -41.94 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.31 Total: 14.41 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.32 Total: 6.17 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.15 Total: -60.87 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.37 Total: -23.14 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.55 -6.39 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491415119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.418 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds