Wall clock time and date at job start Tue Mar 31 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32479 * 120.37610 * 2 1 4 4 C 1.32292 * 120.90444 * 179.97438 * 3 2 1 5 5 O 1.35455 * 119.16516 * 179.97438 * 4 3 2 6 6 N 1.32310 * 121.66938 * 359.96598 * 4 3 2 7 7 C 1.32755 * 120.66325 * 359.78419 * 6 4 3 8 8 O 1.35502 * 120.48030 * 180.25868 * 7 6 4 9 9 C 1.38187 * 120.37307 * 179.97438 * 2 1 3 10 10 C 1.50696 * 120.76750 * 0.02562 * 9 2 1 11 11 C 1.50706 * 109.47259 * 89.99948 * 10 9 2 12 12 O 1.21283 * 119.99503 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72770 * 11 10 9 14 14 C 1.46492 * 120.00231 * 359.97438 * 13 11 10 15 15 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 16 16 H 1.09005 * 109.46586 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.46809 * 239.99992 * 15 13 11 18 18 C 1.52995 * 109.47298 * 119.99670 * 15 13 11 19 19 N 1.46500 * 109.47174 * 304.99942 * 18 15 13 20 20 C 1.36936 * 120.00363 * 180.02562 * 19 18 15 21 21 H 1.08002 * 119.99819 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00698 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00446 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99395 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46669 * 90.00669 * 24 22 20 26 26 H 1.48501 * 109.47106 * 209.99928 * 24 22 20 27 27 H 1.48494 * 109.47497 * 330.00418 * 24 22 20 28 28 H 1.08994 * 109.47292 * 270.02762 * 1 2 3 29 29 H 1.09008 * 109.46803 * 30.02413 * 1 2 3 30 30 H 1.08994 * 109.47181 * 150.02271 * 1 2 3 31 31 H 0.96702 * 114.00227 * 89.99354 * 5 4 3 32 32 H 0.96699 * 114.00546 * 270.20988 * 8 7 6 33 33 H 1.09001 * 109.47545 * 330.00288 * 10 9 2 34 34 H 1.08998 * 109.47669 * 210.00231 * 10 9 2 35 35 H 1.09001 * 109.47443 * 89.99785 * 14 13 11 36 36 H 1.08999 * 109.47479 * 210.00762 * 14 13 11 37 37 H 1.09006 * 109.47080 * 330.00171 * 14 13 11 38 38 H 1.08999 * 109.46868 * 299.99822 * 17 15 13 39 39 H 1.09000 * 109.47763 * 59.99840 * 17 15 13 40 40 H 1.09002 * 109.47013 * 179.97438 * 17 15 13 41 41 H 1.08996 * 109.47091 * 65.00216 * 18 15 13 42 42 H 1.09001 * 109.46941 * 185.00201 * 18 15 13 43 43 H 0.97003 * 119.99820 * 0.02562 * 19 18 15 44 44 H 0.96997 * 120.00319 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1769 1.1429 0.0000 4 6 3.4998 1.1551 0.0005 5 8 4.1490 2.3440 0.0000 6 7 4.2048 0.0355 0.0017 7 6 3.5992 -1.1459 0.0067 8 8 4.3249 -2.2902 0.0132 9 6 2.2057 -1.1922 0.0005 10 6 1.4784 -2.5120 0.0005 11 6 1.2364 -2.9523 -1.4203 12 8 1.6176 -2.2624 -2.3421 13 7 0.6018 -4.1155 -1.6666 14 6 0.1477 -4.9522 -0.5531 15 6 0.3672 -4.5438 -3.0478 16 1 0.7723 -3.7990 -3.7329 17 6 -1.1367 -4.6918 -3.2873 18 6 1.0568 -5.8880 -3.2892 19 7 2.4765 -5.7772 -2.9452 20 6 3.3009 -6.8621 -3.0818 21 1 2.9044 -7.7993 -3.4435 22 6 4.6460 -6.7573 -2.7554 23 7 5.4383 -7.7999 -2.8872 24 14 5.3318 -5.1360 -2.1305 25 1 5.2245 -5.0911 -0.6500 26 1 6.7577 -5.0159 -2.5272 27 1 4.5584 -4.0123 -2.7172 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8901 -0.5134 31 1 4.3371 2.6899 0.8832 32 1 4.5394 -2.6250 -0.8683 33 1 0.5233 -2.4006 0.5139 34 1 2.0822 -3.2597 0.5148 35 1 -0.8672 -4.6678 -0.2753 36 1 0.1617 -5.9992 -0.8560 37 1 0.8109 -4.8121 0.3006 38 1 -1.5421 -5.4363 -2.6021 39 1 -1.6281 -3.7341 -3.1153 40 1 -1.3114 -5.0100 -4.3151 41 1 0.5908 -6.6523 -2.6672 42 1 0.9578 -6.1638 -4.3391 43 1 2.8326 -4.9353 -2.6207 44 1 6.3782 -7.7268 -2.6588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496192105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:48 Heat of formation + Delta-G solvation = -38.626225 kcal Electronic energy + Delta-G solvation = -29053.827356 eV Core-core repulsion = 25008.498892 eV Total energy + Delta-G solvation = -4045.328463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68196 -39.98471 -38.34496 -37.26682 -36.65330 -34.43565 -34.20846 -32.99962 -31.92197 -30.63850 -29.47932 -27.43872 -26.84018 -25.99341 -23.75142 -23.04182 -22.24648 -21.05990 -19.48896 -19.06555 -18.77260 -18.18123 -17.63287 -17.33686 -16.15255 -15.94649 -15.60133 -15.49816 -14.75847 -14.71208 -14.21691 -14.09904 -13.88840 -13.44168 -13.33150 -12.98990 -12.84810 -12.73289 -12.69662 -12.60351 -12.47507 -12.35935 -12.10776 -12.07391 -11.87192 -11.82811 -11.07671 -10.98922 -10.88104 -10.66136 -10.56744 -10.22282 -9.90501 -9.65834 -9.45678 -9.20472 -8.96251 -8.55469 -7.29049 -5.82813 -3.17813 0.47588 0.72732 2.61175 2.72021 2.95421 3.14334 3.26430 3.30276 3.39844 3.56373 4.03184 4.35417 4.46546 4.51730 4.54451 4.78126 4.96006 5.01574 5.12815 5.17695 5.21517 5.23544 5.29842 5.39397 5.47108 5.48991 5.52605 5.58410 5.73192 5.74151 5.88028 5.91689 5.96504 6.13266 6.31851 6.52505 6.54315 6.73707 7.13570 7.20100 7.42247 7.77412 7.92916 8.18468 8.36558 9.15410 9.87913 10.08177 11.35669 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.005185 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.151374 B = 5399.062638 C = 7158.162922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.221 3.779 3 N -0.531 5.531 4 C 0.518 3.482 5 O -0.455 6.455 6 N -0.550 5.550 7 C 0.399 3.601 8 O -0.471 6.471 9 C -0.191 4.191 10 C -0.095 4.095 11 C 0.513 3.487 12 O -0.539 6.539 13 N -0.596 5.596 14 C 0.074 3.926 15 C 0.121 3.879 16 H 0.100 0.900 17 C -0.153 4.153 18 C 0.148 3.852 19 N -0.751 5.751 20 C -0.244 4.244 21 H 0.091 0.909 22 C 0.009 3.991 23 N -0.932 5.932 24 Si 0.863 3.137 25 H -0.272 1.272 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.411 0.589 32 H 0.411 0.589 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.038 0.962 43 H 0.361 0.639 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.802 13.764 9.923 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.076 3.924 3 N -0.258 5.258 4 C 0.213 3.787 5 O -0.258 6.258 6 N -0.286 5.286 7 C 0.211 3.789 8 O -0.281 6.281 9 C -0.197 4.197 10 C -0.135 4.135 11 C 0.300 3.700 12 O -0.416 6.416 13 N -0.329 5.329 14 C -0.069 4.069 15 C 0.018 3.982 16 H 0.118 0.882 17 C -0.212 4.212 18 C 0.020 3.980 19 N -0.397 5.397 20 C -0.374 4.374 21 H 0.109 0.891 22 C -0.187 4.187 23 N -0.579 5.579 24 Si 0.693 3.307 25 H -0.198 1.198 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.270 0.730 32 H 0.273 0.727 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.194 0.806 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.023 14.758 9.355 22.405 hybrid contribution 0.708 0.199 0.431 0.852 sum -13.315 14.957 9.786 22.288 Atomic orbital electron populations 1.20844 0.87117 1.04726 1.03780 1.21202 0.97353 0.85815 0.88034 1.67815 1.08906 1.30943 1.18146 1.19789 0.83656 0.84549 0.90722 1.84736 1.76172 1.30689 1.34215 1.67408 1.43873 0.98607 1.18703 1.18941 0.86510 0.84763 0.88666 1.84691 1.73760 1.34588 1.35071 1.20962 0.93920 0.97116 1.07727 1.20554 1.02414 0.94396 0.96177 1.20377 0.77774 0.81089 0.90715 1.90730 1.50586 1.54170 1.46109 1.47757 1.57311 1.20296 1.07508 1.21832 0.98936 0.96921 0.89181 1.21498 0.95562 0.98659 0.82519 0.88171 1.22030 0.94882 1.01818 1.02465 1.20990 0.85506 0.93115 0.98421 1.42619 1.04480 1.11775 1.80810 1.19048 0.89933 0.91039 1.37378 0.89132 1.24614 0.96046 0.96486 1.01518 1.69667 1.05116 1.28655 1.54502 0.86841 0.78938 0.85352 0.79584 1.19795 1.21318 1.20245 0.89096 0.89290 0.89853 0.73019 0.72684 0.87009 0.86481 0.92712 0.89759 0.91088 0.92140 0.92591 0.91211 0.95130 0.94467 0.80624 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.44 36.01 0.34 -0.57 16 2 C 0.22 2.79 6.81 -82.33 -0.56 2.23 16 3 N -0.53 -7.44 10.40 -11.02 -0.11 -7.55 16 4 C 0.52 7.65 8.71 -91.28 -0.80 6.86 16 5 O -0.46 -5.49 13.64 -18.06 -0.25 -5.73 16 6 N -0.55 -9.12 10.49 -14.79 -0.16 -9.28 16 7 C 0.40 6.48 7.81 -16.71 -0.13 6.35 16 8 O -0.47 -8.01 12.74 -18.20 -0.23 -8.24 16 9 C -0.19 -2.64 4.42 -104.20 -0.46 -3.10 16 10 C -0.09 -1.10 3.55 -29.03 -0.10 -1.20 16 11 C 0.51 7.60 7.05 -10.98 -0.08 7.53 16 12 O -0.54 -10.11 15.36 5.56 0.09 -10.02 16 13 N -0.60 -8.07 2.24 -173.93 -0.39 -8.46 16 14 C 0.07 0.76 9.30 59.84 0.56 1.31 16 15 C 0.12 1.77 2.80 -67.93 -0.19 1.58 16 16 H 0.10 1.72 6.90 -51.93 -0.36 1.36 16 17 C -0.15 -1.64 9.19 37.16 0.34 -1.30 16 18 C 0.15 2.66 5.50 -4.04 -0.02 2.64 16 19 N -0.75 -17.39 5.24 -59.91 -0.31 -17.70 16 20 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 23 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 24 Si 0.86 21.56 26.04 -169.99 -4.43 17.13 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.65 6.41 56.52 0.36 -6.29 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.08 0.67 6.52 -51.93 -0.34 0.33 16 31 H 0.41 2.50 9.06 45.56 0.41 2.91 16 32 H 0.41 7.01 7.11 45.56 0.32 7.34 16 33 H 0.11 0.85 6.78 -51.93 -0.35 0.50 16 34 H 0.12 1.35 6.86 -51.93 -0.36 0.99 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.95 6.53 -51.93 -0.34 0.61 16 37 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 38 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.53 6.88 -51.93 -0.36 0.17 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.36 8.46 4.93 -40.82 -0.20 8.26 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -37.40 362.20 -5.35 -42.75 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -4.43 Total: 14.32 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -1.36 Total: 15.59 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -0.20 Total: -71.25 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.39 Total: -23.99 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.43 Total: 17.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.40 -5.35 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496192105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.121 kcal (2) G-P(sol) polarization free energy of solvation -37.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds