Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47346 * 305.00035 * 11 10 9 13 13 O 1.42904 * 109.47396 * 64.99584 * 11 10 9 14 14 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 15 15 N 1.46496 * 109.47451 * 180.02562 * 14 11 10 16 16 C 1.34780 * 120.00205 * 180.02562 * 15 14 11 17 17 O 1.21600 * 119.99925 * 359.97438 * 16 15 14 18 18 C 1.47423 * 119.99958 * 180.02562 * 16 15 14 19 19 C 1.38047 * 126.41678 * 0.02562 * 18 16 15 20 20 N 1.34258 * 107.41769 * 179.97438 * 19 18 16 21 21 H 0.96996 * 125.75884 * 180.02562 * 20 19 18 22 22 N 1.39937 * 108.49298 * 359.97438 * 20 19 18 23 23 C 1.30452 * 108.89614 * 359.76354 * 22 20 19 24 24 C 1.50700 * 125.98923 * 180.26049 * 23 22 20 25 25 H 1.08998 * 109.82075 * 195.84093 * 24 23 22 26 26 C 1.54385 * 109.83348 * 74.95153 * 24 23 22 27 27 C 1.55445 * 102.18726 * 219.18341 * 26 24 23 28 28 C 1.54951 * 100.99022 * 34.03598 * 27 26 24 29 29 O 1.43238 * 109.82770 * 316.72526 * 24 23 22 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 0.96708 * 113.99258 * 60.00195 * 13 11 10 35 35 H 1.09004 * 109.46881 * 300.00361 * 14 11 10 36 36 H 1.09002 * 109.47016 * 59.99741 * 14 11 10 37 37 H 0.97008 * 120.00373 * 359.97438 * 15 14 11 38 38 H 1.07993 * 126.29033 * 359.97438 * 19 18 16 39 39 H 1.09004 * 110.84275 * 337.32307 * 26 24 23 40 40 H 1.09000 * 110.84938 * 100.93543 * 26 24 23 41 41 H 1.09002 * 111.06156 * 276.12444 * 27 26 24 42 42 H 1.08996 * 111.18708 * 152.00723 * 27 26 24 43 43 H 1.08998 * 110.31018 * 204.68761 * 28 27 26 44 44 H 1.09004 * 110.39131 * 82.56771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3795 -4.7130 0.8393 13 8 0.3221 -4.8115 -1.2235 14 6 1.8248 -6.1411 0.1235 15 7 0.8729 -7.2547 0.1222 16 6 1.3188 -8.5225 0.2242 17 8 2.5112 -8.7421 0.3168 18 6 0.3609 -9.6431 0.2224 19 6 -1.0127 -9.5470 0.1230 20 7 -1.5066 -10.7949 0.1596 21 1 -2.4450 -11.0348 0.1086 22 7 -0.4391 -11.6913 0.2826 23 6 0.6772 -11.0170 0.3155 24 6 2.0613 -11.6010 0.4350 25 1 2.7684 -10.8210 0.7172 26 6 2.4832 -12.2285 -0.9110 27 6 3.2290 -13.5136 -0.4545 28 6 2.4172 -13.8931 0.8096 29 8 2.0665 -12.6410 1.4200 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 0.8685 -4.9027 -2.0162 35 1 2.5093 -6.2477 -0.7181 36 1 2.3907 -6.1474 1.0551 37 1 -0.0784 -7.0796 0.0487 38 1 -1.5847 -8.6355 0.0325 39 1 1.6095 -12.4801 -1.5124 40 1 3.1522 -11.5630 -1.4565 41 1 4.2672 -13.2959 -0.2039 42 1 3.1659 -14.2955 -1.2113 43 1 3.0295 -14.4866 1.4884 44 1 1.5182 -14.4438 0.5325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497041313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = -49.648966 kcal Electronic energy + Delta-G solvation = -26873.257966 eV Core-core repulsion = 22827.451520 eV Total energy + Delta-G solvation = -4045.806445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80769 -39.40825 -39.31924 -37.55403 -34.41694 -34.01645 -32.82674 -32.21247 -31.46491 -30.80750 -29.10543 -28.70683 -25.50647 -23.76624 -23.38198 -22.34291 -21.97382 -21.43286 -20.33490 -19.91668 -18.80723 -17.19975 -16.80939 -16.74759 -16.31537 -16.26104 -15.99046 -15.39869 -15.08313 -15.04995 -14.49482 -14.27718 -13.96197 -13.86976 -13.71956 -13.54282 -13.15082 -12.98653 -12.65515 -12.32610 -12.04549 -11.92921 -11.86122 -11.56314 -11.26545 -11.16845 -10.97853 -10.83007 -10.63818 -10.20630 -10.15838 -10.03476 -9.82784 -9.64974 -9.49746 -9.26601 -8.96585 -8.90861 -6.95628 -5.77914 -3.07537 1.19691 1.80768 2.33656 3.15663 3.27754 3.42797 3.47990 3.49671 3.72495 4.02959 4.22015 4.37110 4.53596 4.61018 4.61504 4.69235 4.84510 4.94070 5.00090 5.07020 5.11360 5.24411 5.34665 5.41974 5.45846 5.54526 5.57865 5.61900 5.69445 5.82548 5.90136 5.94708 6.04997 6.18220 6.40719 6.50665 6.66029 6.71523 6.77171 7.19135 7.51082 7.67197 7.90403 8.22072 8.40265 9.51983 10.08349 10.43930 11.44444 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.028343 B = 0.002048 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.655967 B =13670.099795 C =14339.160989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.554 6.554 14 C 0.091 3.909 15 N -0.718 5.718 16 C 0.592 3.408 17 O -0.545 6.545 18 C -0.280 4.280 19 C 0.107 3.893 20 N -0.461 5.461 21 H 0.445 0.555 22 N -0.280 5.280 23 C 0.122 3.878 24 C 0.151 3.849 25 H 0.129 0.871 26 C -0.141 4.141 27 C -0.155 4.155 28 C 0.050 3.950 29 O -0.368 6.368 30 H 0.255 0.745 31 H 0.388 0.612 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.373 0.627 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.401 0.599 38 H 0.190 0.810 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 -28.174 -1.953 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.359 6.359 14 C -0.033 4.033 15 N -0.369 5.369 16 C 0.379 3.621 17 O -0.424 6.424 18 C -0.295 4.295 19 C -0.046 4.046 20 N -0.165 5.165 21 H 0.289 0.711 22 N -0.102 5.102 23 C -0.047 4.047 24 C 0.092 3.908 25 H 0.147 0.853 26 C -0.179 4.179 27 C -0.193 4.193 28 C -0.027 4.027 29 O -0.287 6.287 30 H 0.065 0.935 31 H 0.222 0.778 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.220 0.780 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.207 0.793 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.117 -29.248 -1.204 29.294 hybrid contribution -0.186 1.759 -0.671 1.891 sum -1.303 -27.490 -1.875 27.584 Atomic orbital electron populations 1.69672 1.05109 1.25682 1.57421 1.24761 0.95545 0.97751 1.02866 0.86175 0.78648 0.83733 0.77526 1.21693 1.21749 1.20726 1.19219 0.91019 0.84095 1.43074 0.91180 1.42237 1.06049 0.99425 1.89375 1.21205 0.93523 0.86540 0.98920 1.22407 0.94612 0.91921 0.88176 0.87746 1.86565 1.37599 1.96260 1.15456 1.22095 0.92178 0.85677 1.03343 1.45719 1.10956 1.05310 1.74941 1.17209 0.87281 0.81730 0.75849 1.90713 1.16237 1.84430 1.50987 1.20241 0.92535 0.94108 1.22588 1.23226 0.94383 0.90360 0.96583 1.46195 1.09783 1.04131 1.56409 0.71051 1.77190 0.93427 1.15151 1.24450 1.22709 0.95240 0.90701 0.96028 1.21461 0.89102 0.91212 0.89043 0.85334 1.23139 1.01087 0.97005 0.96699 1.23308 1.00320 0.97591 0.98047 1.23397 0.98076 0.86956 0.94260 1.88505 1.90798 1.16659 1.32710 0.93487 0.77759 0.95864 0.95304 0.77952 0.90943 0.90274 0.76386 0.79344 0.90502 0.89130 0.89969 0.89801 0.89622 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.05 5.55 -59.91 -0.33 -18.38 16 10 C 0.13 2.38 5.90 -4.04 -0.02 2.36 16 11 C 0.09 1.29 3.09 -26.73 -0.08 1.20 16 12 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 13 O -0.55 -8.13 13.03 -35.23 -0.46 -8.59 16 14 C 0.09 1.14 5.34 -4.05 -0.02 1.12 16 15 N -0.72 -7.94 5.44 -61.39 -0.33 -8.28 16 16 C 0.59 7.55 7.81 -12.52 -0.10 7.46 16 17 O -0.54 -8.53 14.67 5.28 0.08 -8.46 16 18 C -0.28 -3.11 6.13 -105.07 -0.64 -3.76 16 19 C 0.11 0.81 11.52 -16.56 -0.19 0.62 16 20 N -0.46 -3.46 7.29 30.85 0.22 -3.24 16 21 H 0.44 1.70 8.96 -182.73 -1.64 0.06 16 22 N -0.28 -3.15 12.63 33.90 0.43 -2.72 16 23 C 0.12 1.48 6.02 -82.02 -0.49 0.98 16 24 C 0.15 1.78 3.80 -27.16 -0.10 1.68 16 25 H 0.13 1.71 5.92 -51.93 -0.31 1.41 16 26 C -0.14 -1.28 6.55 -24.71 -0.16 -1.44 16 27 C -0.16 -1.11 7.16 -24.40 -0.17 -1.29 16 28 C 0.05 0.43 7.78 38.19 0.30 0.72 16 29 O -0.37 -4.55 11.00 -35.23 -0.39 -4.94 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.39 10.31 7.67 -40.82 -0.31 9.99 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.37 4.54 9.05 45.56 0.41 4.95 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.40 3.63 7.27 -40.82 -0.30 3.34 16 38 H 0.19 0.69 7.46 -52.49 -0.39 0.30 16 39 H 0.08 0.70 7.84 -51.93 -0.41 0.30 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -36.41 371.84 -8.14 -44.54 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.71 Total: 12.28 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.94 Total: 2.28 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.71 Total: -60.00 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.77 Total: -21.98 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.41 -8.14 -44.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497041313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.107 kcal (2) G-P(sol) polarization free energy of solvation -36.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds