Wall clock time and date at job start Tue Mar 31 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34490 * 126.83687 * 2 1 4 4 N 1.36447 * 108.85940 * 180.25274 * 3 2 1 5 5 H 0.96999 * 124.84751 * 179.72553 * 4 3 2 6 6 C 1.34656 * 110.29735 * 359.75315 * 4 3 2 7 7 C 1.36774 * 108.39686 * 359.97438 * 6 4 3 8 8 C 1.47260 * 126.94235 * 179.97438 * 7 6 4 9 9 O 1.21622 * 120.00178 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99793 * 0.02810 * 8 7 6 11 11 C 1.46497 * 119.99638 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46900 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47164 * 60.00014 * 12 11 10 14 14 O 1.42903 * 109.47171 * 299.99748 * 12 11 10 15 15 C 1.53003 * 109.47376 * 180.02562 * 12 11 10 16 16 N 1.46900 * 109.47407 * 184.99739 * 15 12 11 17 17 C 1.46902 * 110.99888 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.46722 * 180.02562 * 17 16 15 19 19 O 1.21298 * 120.00202 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99889 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99834 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00344 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99671 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99942 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99837 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47134 * 0.02562 * 25 23 21 27 27 H 1.48492 * 109.47000 * 120.00084 * 25 23 21 28 28 H 1.48497 * 109.47073 * 239.99676 * 25 23 21 29 29 H 1.08998 * 109.47059 * 270.14795 * 1 2 3 30 30 H 1.08998 * 109.47233 * 30.14649 * 1 2 3 31 31 H 1.08995 * 109.46833 * 150.14517 * 1 2 3 32 32 H 1.08001 * 125.56666 * 0.04093 * 3 2 1 33 33 H 1.08000 * 125.80033 * 180.02562 * 6 4 3 34 34 H 0.96996 * 120.00052 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.47200 * 60.00094 * 11 10 8 36 36 H 1.08997 * 109.47487 * 300.00148 * 11 10 8 37 37 H 0.96700 * 114.00311 * 300.00378 * 14 12 11 38 38 H 1.09005 * 109.46682 * 304.99749 * 15 12 11 39 39 H 1.08999 * 109.47221 * 64.99915 * 15 12 11 40 40 H 1.00901 * 110.99392 * 56.04464 * 16 15 12 41 41 H 1.08994 * 109.47353 * 299.99985 * 17 16 15 42 42 H 1.08992 * 109.46815 * 60.00343 * 17 16 15 43 43 H 0.96995 * 119.99740 * 0.02562 * 20 18 17 44 44 H 0.96999 * 119.99954 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6553 -0.0057 5 1 4.3840 1.2414 -0.0107 6 6 3.6657 -0.6902 -0.0040 7 6 2.3864 -1.1740 0.0035 8 6 1.9750 -2.5880 0.0072 9 8 0.7937 -2.8776 0.0135 10 7 2.9075 -3.5612 0.0037 11 6 2.4981 -4.9678 0.0080 12 6 3.7406 -5.8605 0.0034 13 1 4.3399 -5.6538 0.8901 14 8 4.5148 -5.5933 -1.1677 15 6 3.3132 -7.3296 0.0072 16 7 4.5017 -8.1851 0.1235 17 6 4.1289 -9.6060 0.1310 18 6 5.3710 -10.4506 0.2518 19 8 6.4599 -9.9210 0.3240 20 7 5.2722 -11.7945 0.2786 21 6 6.4023 -12.5629 0.3890 22 1 7.3718 -12.0913 0.4542 23 6 6.3005 -13.9484 0.4161 24 7 5.1209 -14.5222 0.3363 25 14 7.8402 -14.9953 0.5659 26 1 9.0329 -14.1138 0.6395 27 1 7.7592 -15.8215 1.7971 28 1 7.9524 -15.8830 -0.6193 29 1 -0.3633 0.0027 1.0276 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3633 -0.8913 -0.5116 32 1 1.9868 2.1059 0.0006 33 1 4.5665 -1.2860 -0.0071 34 1 3.8495 -3.3302 -0.0009 35 1 1.8985 -5.1744 -0.8785 36 1 1.9079 -5.1718 0.9014 37 1 4.0436 -5.7558 -1.9963 38 1 2.6497 -7.5127 0.8524 39 1 2.7904 -7.5584 -0.9214 40 1 5.0389 -7.9482 0.9441 41 1 3.4712 -9.8046 0.9772 42 1 3.6115 -9.8507 -0.7966 43 1 4.4016 -12.2180 0.2197 44 1 5.0498 -15.4894 0.3549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497112730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:07 Heat of formation + Delta-G solvation = -114.755683 kcal Electronic energy + Delta-G solvation = -25831.697301 eV Core-core repulsion = 21783.067616 eV Total energy + Delta-G solvation = -4048.629684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06364 -40.34510 -40.07737 -38.76190 -36.31990 -35.65415 -35.18907 -33.31824 -33.26397 -31.79529 -30.45486 -28.42208 -27.42878 -26.55181 -24.81249 -23.35639 -22.76361 -21.09851 -20.82102 -20.23227 -19.89708 -19.18442 -18.20108 -17.48625 -17.34822 -17.08984 -16.63390 -16.39368 -16.14628 -15.88012 -15.82291 -15.24602 -15.10377 -14.92330 -14.77309 -14.41118 -14.35418 -14.01723 -13.85661 -13.57441 -13.47921 -13.33487 -13.25801 -13.18099 -12.94091 -12.67767 -12.40253 -12.30841 -12.10938 -11.93434 -11.51067 -11.14335 -10.82886 -10.32251 -10.13468 -10.01120 -9.51530 -9.28489 -9.16429 -8.46572 -5.95361 0.80555 1.37191 1.42481 1.51292 1.56814 2.05694 2.16989 2.30640 2.48758 2.59907 2.93429 3.20804 3.46047 3.59729 3.85601 3.97304 4.01855 4.12416 4.17105 4.31958 4.34216 4.47000 4.48433 4.53034 4.57754 4.68055 4.73845 4.82240 4.90624 4.93477 5.09423 5.17556 5.33354 5.41446 5.48493 5.84373 5.87290 5.98581 6.09331 6.37982 6.60456 6.64794 6.73206 6.88984 7.13045 7.38025 7.56656 8.12104 8.71024 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.041249 B = 0.001604 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.637879 B =17451.738793 C =17989.725139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.152 4.152 3 C -0.012 4.012 4 N -0.534 5.534 5 H 0.438 0.562 6 C 0.069 3.931 7 C -0.272 4.272 8 C 0.582 3.418 9 O -0.592 6.592 10 N -0.712 5.712 11 C 0.098 3.902 12 C 0.116 3.884 13 H 0.105 0.895 14 O -0.559 6.559 15 C 0.031 3.969 16 N -0.674 5.674 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.199 0.801 33 H 0.202 0.798 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.386 0.614 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.344 0.656 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 30.623 -0.733 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.158 4.158 3 C -0.140 4.140 4 N -0.129 5.129 5 H 0.278 0.722 6 C -0.070 4.070 7 C -0.283 4.283 8 C 0.372 3.628 9 O -0.474 6.474 10 N -0.364 5.364 11 C -0.027 4.027 12 C 0.056 3.944 13 H 0.123 0.877 14 O -0.365 6.365 15 C -0.099 4.099 16 N -0.307 5.307 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.216 0.784 33 H 0.219 0.781 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.162 0.838 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.693 30.835 -0.919 31.566 hybrid contribution -0.023 -1.138 0.564 1.271 sum -6.717 29.696 -0.354 30.449 Atomic orbital electron populations 1.20094 0.89947 1.02050 1.01471 1.20828 0.95987 0.91496 1.07528 1.21983 0.82445 0.99839 1.09772 1.41570 1.08785 1.06517 1.56024 0.72192 1.22329 0.98283 0.84708 1.01669 1.20428 0.94566 0.91963 1.21310 1.17814 0.84898 0.85239 0.74814 1.90714 1.19102 1.84544 1.53026 1.45583 1.10128 1.05280 1.75452 1.21906 0.97060 0.80746 1.03015 1.21936 0.91155 0.91268 0.90053 0.87750 1.86586 1.43733 1.89979 1.16218 1.22671 0.91595 0.92661 1.02974 1.59976 1.21495 1.01224 1.47956 1.21545 0.93476 0.88525 1.03224 1.20914 0.91600 0.82853 0.82187 1.90498 1.30868 1.73028 1.56557 1.41943 1.09488 1.04980 1.64696 1.19720 0.88304 0.88971 1.49434 0.90332 1.26046 1.01290 0.97625 0.96312 1.69678 1.24326 1.11856 1.50277 0.84856 0.77415 0.77663 0.78304 1.19807 1.19580 1.19623 0.92397 0.90329 0.93345 0.78371 0.78108 0.75122 0.91197 0.90951 0.76551 0.92834 0.89314 0.83786 0.91523 0.87770 0.76964 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.97 71.24 0.71 -0.74 16 2 C -0.15 -2.76 6.35 -18.51 -0.12 -2.88 16 3 C -0.01 -0.12 11.82 83.12 0.98 0.86 16 4 N -0.53 -3.44 5.90 -194.55 -1.15 -4.59 16 5 H 0.44 -0.49 8.96 -92.71 -0.83 -1.32 16 6 C 0.07 0.72 11.40 83.92 0.96 1.67 16 7 C -0.27 -5.20 6.29 -19.04 -0.12 -5.32 16 8 C 0.58 13.79 7.81 86.61 0.68 14.46 16 9 O -0.59 -18.78 15.32 -4.10 -0.06 -18.85 16 10 N -0.71 -12.53 5.44 -466.53 -2.54 -15.07 16 11 C 0.10 1.71 5.34 86.38 0.46 2.17 16 12 C 0.12 2.05 3.23 30.60 0.10 2.15 16 13 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 14 O -0.56 -11.16 13.03 -148.98 -1.94 -13.10 16 15 C 0.03 0.62 5.32 86.30 0.46 1.08 16 16 N -0.67 -20.32 6.07 -517.94 -3.15 -23.46 16 17 C 0.06 2.17 6.17 85.56 0.53 2.69 16 18 C 0.44 20.83 7.82 87.66 0.69 21.52 16 19 O -0.62 -34.81 15.78 -3.08 -0.05 -34.86 16 20 N -0.57 -29.56 5.29 -306.97 -1.62 -31.19 16 21 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 25 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.17 6.86 -2.39 -0.02 1.16 16 32 H 0.20 0.67 8.06 -2.91 -0.02 0.64 16 33 H 0.20 0.76 7.45 -2.91 -0.02 0.74 16 34 H 0.41 5.39 7.29 -92.71 -0.68 4.72 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.39 5.80 9.05 -74.06 -0.67 5.13 16 38 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.34 11.01 8.43 -89.69 -0.76 10.25 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -82.54 380.20 -4.17 -86.71 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -2.57 Total: 39.72 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.60 Total: 19.10 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -8.17 Total: -123.81 kcal Atomic # 8 Polarization: -64.76 SS G_CDS: -2.05 Total: -66.81 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -82.54 -4.17 -86.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497112730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.049 kcal (2) G-P(sol) polarization free energy of solvation -82.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds