Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 N 1.46896 * 109.46836 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00042 * 66.04319 * 9 8 7 11 11 C 1.46905 * 111.00113 * 189.99557 * 9 8 7 12 12 C 1.50691 * 109.47164 * 170.00249 * 11 9 8 13 13 O 1.20828 * 120.00180 * 0.02562 * 12 11 9 14 14 O 1.34235 * 120.00153 * 180.02562 * 12 11 9 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00165 * 23 21 19 25 25 H 1.48501 * 109.47045 * 210.00089 * 23 21 19 26 26 H 1.48501 * 109.46990 * 330.00178 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 35 35 H 1.09005 * 109.46675 * 59.99956 * 10 9 8 36 36 H 1.09001 * 109.47224 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47376 * 300.00356 * 10 9 8 38 38 H 1.08998 * 109.46898 * 290.00233 * 11 9 8 39 39 H 1.09004 * 109.46779 * 49.99911 * 11 9 8 40 40 H 0.96693 * 117.00019 * 180.02562 * 14 12 11 41 41 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 42 42 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 43 43 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 44 44 H 0.96997 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 7 3.1535 7.2277 0.0121 10 6 2.4587 7.5633 1.2622 11 6 4.2878 8.1322 -0.2189 12 6 3.7758 9.5293 -0.4571 13 8 2.5879 9.7492 -0.4362 14 8 4.6395 10.5296 -0.6927 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.0141 -5.0563 -0.6739 23 14 1.0839 -4.8349 -3.4347 24 1 2.3648 -5.4227 -3.9027 25 1 0.0152 -5.8641 -3.4966 26 1 0.7182 -3.6884 -4.3048 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.1842 5.6296 0.9054 34 1 4.1932 5.6324 -0.8745 35 1 3.1319 7.4071 2.1052 36 1 2.1466 8.6073 1.2354 37 1 1.5826 6.9245 1.3738 38 1 4.9395 8.1281 0.6548 39 1 4.8481 7.7967 -1.0917 40 1 4.2639 11.4084 -0.8393 41 1 4.5448 1.2675 -0.0108 42 1 2.5848 -3.0960 0.5130 43 1 0.8915 -2.5472 0.5136 44 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599979945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -49.197465 kcal Electronic energy + Delta-G solvation = -26397.483052 eV Core-core repulsion = 22351.696185 eV Total energy + Delta-G solvation = -4045.786867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80950 -40.73649 -38.97557 -37.84310 -36.40197 -34.54322 -33.86419 -32.10083 -31.21462 -30.20879 -28.68397 -27.33585 -26.65159 -25.35438 -23.44845 -22.41395 -21.70888 -21.28325 -19.84750 -19.00209 -18.50535 -17.25823 -16.89538 -16.73307 -16.70744 -16.28104 -15.87193 -15.16785 -14.96161 -14.72222 -14.56274 -14.32827 -14.23501 -13.75438 -13.39027 -13.19609 -13.03630 -12.63048 -12.57301 -12.42131 -12.32526 -12.09466 -12.03166 -11.76698 -11.72837 -11.47438 -11.44936 -11.11903 -10.88727 -10.82004 -10.37116 -10.18776 -9.93666 -9.41679 -8.96282 -8.93410 -8.71123 -8.58998 -7.91221 -6.33679 -4.41455 1.77341 2.19659 2.32082 2.79364 3.09853 3.18489 3.24885 3.28706 3.41065 3.79758 3.92837 4.24411 4.41244 4.60471 4.63329 4.73440 4.80981 4.99912 5.04077 5.10385 5.13136 5.18824 5.26981 5.52191 5.62398 5.72699 5.74838 5.83790 5.95457 6.08045 6.14201 6.34343 6.37483 6.44616 6.56240 6.63720 6.79870 6.90723 7.15649 7.47669 7.56054 7.72043 7.77067 7.79202 8.37498 8.61045 8.64552 9.25456 10.74522 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.029449 B = 0.001895 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.555939 B =14776.033824 C =14862.763871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.605 3.395 5 O -0.554 6.554 6 N -0.736 5.736 7 C 0.127 3.873 8 C 0.046 3.954 9 N -0.526 5.526 10 C 0.010 3.990 11 C 0.063 3.937 12 C 0.477 3.523 13 O -0.495 6.495 14 O -0.521 6.521 15 C 0.057 3.943 16 N -0.296 5.296 17 N -0.314 5.314 18 C 0.251 3.749 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.397 0.603 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.028 0.972 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.412 0.588 41 H 0.175 0.825 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 25.749 3.382 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.395 3.605 5 O -0.432 6.432 6 N -0.389 5.389 7 C 0.003 3.997 8 C -0.081 4.081 9 N -0.252 5.252 10 C -0.138 4.138 11 C -0.065 4.065 12 C 0.318 3.682 13 O -0.381 6.381 14 O -0.333 6.333 15 C -0.130 4.130 16 N -0.116 5.116 17 N -0.091 5.091 18 C 0.134 3.866 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.196 1.196 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.231 0.769 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.272 0.728 41 H 0.192 0.808 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.070 24.227 3.128 25.430 hybrid contribution 0.393 0.662 -0.413 0.874 sum 7.462 24.889 2.715 26.125 Atomic orbital electron populations 1.20573 0.86800 1.03771 1.03964 1.21483 0.94980 0.86537 0.94156 1.19657 0.93135 0.92454 1.29600 1.17269 0.84942 0.83822 0.74426 1.90704 1.16701 1.84424 1.51418 1.45602 1.09804 1.05340 1.78168 1.21124 0.95675 0.79627 1.03258 1.22298 0.97183 0.86579 1.02067 1.61469 1.24521 1.01880 1.37300 1.22709 0.99039 1.03966 0.88045 1.21523 0.93358 0.87221 1.04447 1.23281 0.84584 0.87529 0.72814 1.90733 1.17669 1.83924 1.45744 1.84499 1.43911 1.21583 1.83330 1.23703 0.96291 0.92632 1.00365 1.77133 0.98663 1.12276 1.23523 1.49366 1.02463 1.08306 1.48934 1.19859 0.96420 0.70908 0.99453 1.21245 1.47442 0.98120 0.91000 0.91655 1.24924 0.94439 0.96003 0.98305 1.69911 1.44516 1.07153 1.31120 0.86320 0.78078 0.78640 0.83470 1.20261 1.20788 1.19585 0.89805 0.90882 0.88817 0.76935 0.90558 0.91482 0.93480 0.89559 0.95392 0.89789 0.90091 0.90274 0.86225 0.72850 0.80803 0.92518 0.92535 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.57 36.01 0.34 -1.35 16 2 C 0.17 3.36 7.01 -81.61 -0.57 2.79 16 3 C -0.33 -5.99 6.13 -105.07 -0.64 -6.63 16 4 C 0.61 9.87 7.81 -12.52 -0.10 9.77 16 5 O -0.55 -10.59 14.84 5.28 0.08 -10.51 16 6 N -0.74 -8.49 5.55 -61.38 -0.34 -8.83 16 7 C 0.13 1.30 5.60 -4.04 -0.02 1.27 16 8 C 0.05 0.32 5.07 -3.83 -0.02 0.30 16 9 N -0.53 -4.07 4.50 -244.37 -1.10 -5.17 16 10 C 0.01 0.08 8.96 60.07 0.54 0.62 16 11 C 0.06 0.35 5.56 -4.98 -0.03 0.32 16 12 C 0.48 3.42 8.02 36.00 0.29 3.71 16 13 O -0.49 -5.32 15.09 -18.75 -0.28 -5.60 16 14 O -0.52 -2.50 13.42 -39.27 -0.53 -3.02 16 15 C 0.06 0.96 11.50 -16.98 -0.20 0.77 16 16 N -0.30 -6.27 12.50 30.86 0.39 -5.89 16 17 N -0.31 -7.05 3.56 -57.77 -0.21 -7.26 16 18 C 0.25 6.22 5.97 -5.19 -0.03 6.19 16 19 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 23 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.07 1.29 7.05 -51.93 -0.37 0.92 16 29 H 0.09 1.63 6.50 -51.93 -0.34 1.29 16 30 H 0.40 3.45 7.43 -40.82 -0.30 3.15 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16 33 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 34 H 0.09 0.48 7.93 -51.93 -0.41 0.07 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.08 0.75 5.83 -51.93 -0.30 0.45 16 37 H 0.08 0.69 6.47 -51.93 -0.34 0.35 16 38 H 0.08 0.30 8.12 -51.93 -0.42 -0.12 16 39 H 0.12 0.45 7.93 -51.93 -0.41 0.04 16 40 H 0.41 0.44 9.10 45.56 0.41 0.86 16 41 H 0.18 2.03 7.50 -52.49 -0.39 1.63 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -34.54 373.90 -6.73 -41.28 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.23 Total: 2.76 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.86 Total: 4.63 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.52 Total: -50.95 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.73 Total: -19.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.54 -6.73 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599979945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.921 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds