Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 N 1.46896 * 109.46836 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00042 * 66.04319 * 9 8 7 11 11 C 1.46905 * 111.00113 * 189.99557 * 9 8 7 12 12 C 1.50691 * 109.47164 * 170.00249 * 11 9 8 13 13 O 1.20828 * 120.00180 * 0.02562 * 12 11 9 14 14 O 1.34235 * 120.00153 * 180.02562 * 12 11 9 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00165 * 23 21 19 25 25 H 1.48501 * 109.47045 * 210.00089 * 23 21 19 26 26 H 1.48501 * 109.46990 * 330.00178 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 35 35 H 1.09005 * 109.46675 * 59.99956 * 10 9 8 36 36 H 1.09001 * 109.47224 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47376 * 300.00356 * 10 9 8 38 38 H 1.08998 * 109.46898 * 290.00233 * 11 9 8 39 39 H 1.09004 * 109.46779 * 49.99911 * 11 9 8 40 40 H 0.96693 * 117.00019 * 180.02562 * 14 12 11 41 41 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 42 42 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 43 43 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 44 44 H 0.96997 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 7 3.1535 7.2277 0.0121 10 6 2.4587 7.5633 1.2622 11 6 4.2878 8.1322 -0.2189 12 6 3.7758 9.5293 -0.4571 13 8 2.5879 9.7492 -0.4362 14 8 4.6395 10.5296 -0.6927 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.0141 -5.0563 -0.6739 23 14 1.0839 -4.8349 -3.4347 24 1 2.3648 -5.4227 -3.9027 25 1 0.0152 -5.8641 -3.4966 26 1 0.7182 -3.6884 -4.3048 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.1842 5.6296 0.9054 34 1 4.1932 5.6324 -0.8745 35 1 3.1319 7.4071 2.1052 36 1 2.1466 8.6073 1.2354 37 1 1.5826 6.9245 1.3738 38 1 4.9395 8.1281 0.6548 39 1 4.8481 7.7967 -1.0917 40 1 4.2639 11.4084 -0.8393 41 1 4.5448 1.2675 -0.0108 42 1 2.5848 -3.0960 0.5130 43 1 0.8915 -2.5472 0.5136 44 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599979945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -76.784554 kcal Electronic energy + Delta-G solvation = -26398.679318 eV Core-core repulsion = 22351.696185 eV Total energy + Delta-G solvation = -4046.983133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28301 -41.28404 -40.15077 -38.50124 -36.94706 -35.83467 -35.51900 -33.80905 -32.74972 -31.04921 -29.45022 -28.85530 -28.10524 -26.21331 -25.23560 -23.46301 -22.67015 -21.83178 -21.20574 -20.45939 -19.04330 -18.85172 -18.39960 -17.53912 -17.29762 -17.02504 -16.81645 -16.66682 -16.29170 -16.08307 -15.67912 -15.47046 -15.12749 -14.89783 -14.48591 -14.37589 -14.10766 -14.05371 -13.69878 -13.66243 -13.55841 -13.08977 -13.07908 -12.95986 -12.91764 -12.69901 -12.65990 -12.30658 -12.28522 -12.11623 -11.84789 -11.71101 -11.40699 -10.80624 -10.75609 -10.24589 -10.06567 -9.41918 -9.40574 -8.37386 -6.53625 0.70449 1.27629 1.35310 1.37738 1.40281 1.49373 1.64889 1.90016 2.32533 2.42530 2.58384 2.94739 3.10851 3.76364 3.77514 3.87835 4.11204 4.16033 4.23526 4.25692 4.28201 4.45197 4.51083 4.54434 4.57452 4.61364 4.64965 4.80058 4.89328 4.93993 5.00264 5.08759 5.13933 5.19967 5.49361 5.52907 5.69896 5.71471 5.75590 5.85953 5.94080 6.05778 6.55445 6.67447 6.88116 7.07206 7.17395 7.40945 8.70414 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.029449 B = 0.001895 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.555939 B =14776.033824 C =14862.763871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.330 4.330 4 C 0.605 3.395 5 O -0.586 6.586 6 N -0.712 5.712 7 C 0.129 3.871 8 C 0.057 3.943 9 N -0.548 5.548 10 C 0.014 3.986 11 C 0.063 3.937 12 C 0.479 3.521 13 O -0.540 6.540 14 O -0.515 6.515 15 C 0.082 3.918 16 N -0.337 5.337 17 N -0.339 5.339 18 C 0.267 3.733 19 C -0.555 4.555 20 H 0.052 0.948 21 C 0.023 3.977 22 N -0.916 5.916 23 Si 0.971 3.029 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.415 0.585 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.427 0.573 41 H 0.231 0.769 42 H 0.032 0.968 43 H 0.050 0.950 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.955 27.348 2.691 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.007 3.993 3 C -0.345 4.345 4 C 0.394 3.606 5 O -0.468 6.468 6 N -0.364 5.364 7 C 0.004 3.996 8 C -0.070 4.070 9 N -0.274 5.274 10 C -0.134 4.134 11 C -0.065 4.065 12 C 0.322 3.678 13 O -0.430 6.430 14 O -0.329 6.329 15 C -0.105 4.105 16 N -0.156 5.156 17 N -0.116 5.116 18 C 0.148 3.852 19 C -0.593 4.593 20 H 0.070 0.930 21 C -0.178 4.178 22 N -0.554 5.554 23 Si 0.795 3.205 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.252 0.748 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.289 0.711 41 H 0.248 0.752 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.274 25.878 2.442 27.598 hybrid contribution -0.208 0.358 -0.167 0.446 sum 9.066 26.236 2.275 27.851 Atomic orbital electron populations 1.20537 0.86129 1.03941 1.03825 1.21959 0.95874 0.86902 0.94574 1.19938 0.93394 0.92893 1.28301 1.17118 0.85030 0.83903 0.74579 1.90694 1.18267 1.84752 1.53068 1.45356 1.10054 1.05089 1.75932 1.21165 0.97355 0.79195 1.01837 1.22206 0.95441 0.85295 1.04089 1.61356 1.26061 1.02685 1.37261 1.22597 0.99086 1.02677 0.88994 1.21674 0.92728 0.85692 1.06416 1.23688 0.84043 0.88498 0.71539 1.90727 1.19552 1.84696 1.47988 1.84470 1.43403 1.22351 1.82657 1.24553 0.97591 0.91536 0.96807 1.77090 0.98208 1.14563 1.25783 1.49087 1.03441 1.07674 1.51357 1.19364 0.95288 0.72446 0.98122 1.21392 1.47886 0.98433 0.91581 0.92995 1.25729 0.93852 0.95976 1.02251 1.69993 1.44869 1.07566 1.33014 0.85350 0.78342 0.78181 0.78613 1.19727 1.19682 1.19480 0.90054 0.91120 0.88102 0.74799 0.92590 0.92482 0.91345 0.87506 0.93795 0.91306 0.91465 0.87832 0.83983 0.71100 0.75249 0.94981 0.93257 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.57 71.24 0.68 -2.53 16 2 C 0.14 5.84 7.01 42.14 0.30 6.13 16 3 C -0.33 -11.41 6.13 -20.15 -0.12 -11.53 16 4 C 0.60 18.74 7.81 86.67 0.68 19.42 16 5 O -0.59 -22.15 14.84 -4.04 -0.06 -22.21 16 6 N -0.71 -14.31 5.55 -466.36 -2.59 -16.90 16 7 C 0.13 2.35 5.60 86.38 0.48 2.83 16 8 C 0.06 0.57 5.07 86.30 0.44 1.01 16 9 N -0.55 -7.17 4.50 -927.06 -4.17 -11.35 16 10 C 0.01 0.21 8.96 127.69 1.14 1.35 16 11 C 0.06 0.49 5.56 85.55 0.48 0.97 16 12 C 0.48 6.04 8.02 71.23 0.57 6.61 16 13 O -0.54 -11.43 15.09 21.96 0.33 -11.10 16 14 O -0.52 -3.84 13.42 -51.46 -0.69 -4.53 16 15 C 0.08 2.56 11.50 85.65 0.99 3.55 16 16 N -0.34 -14.08 12.50 -56.28 -0.70 -14.79 16 17 N -0.34 -15.50 3.56 -336.70 -1.20 -16.70 16 18 C 0.27 13.75 5.97 85.63 0.51 14.26 16 19 C -0.55 -30.55 9.39 25.60 0.24 -30.31 16 20 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 21 C 0.02 1.26 5.46 84.65 0.46 1.72 16 22 N -0.92 -51.26 13.29 21.45 0.28 -50.97 16 23 Si 0.97 42.68 29.54 68.60 2.03 44.70 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.07 2.60 7.05 -2.39 -0.02 2.59 16 29 H 0.10 3.57 6.50 -2.39 -0.02 3.55 16 30 H 0.41 5.33 7.43 -92.71 -0.69 4.64 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.19 6.55 -2.39 -0.02 1.18 16 33 H 0.07 0.44 8.12 -2.39 -0.02 0.42 16 34 H 0.11 0.67 7.93 -2.39 -0.02 0.66 16 35 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.07 1.22 5.83 -2.39 -0.01 1.21 16 37 H 0.07 1.12 6.47 -2.39 -0.02 1.11 16 38 H 0.10 0.35 8.12 -2.39 -0.02 0.33 16 39 H 0.14 0.48 7.93 -2.39 -0.02 0.46 16 40 H 0.43 0.21 9.10 -74.06 -0.67 -0.46 16 41 H 0.23 4.18 7.50 -2.91 -0.02 4.16 16 42 H 0.03 1.77 8.14 -2.38 -0.02 1.76 16 43 H 0.05 2.56 7.02 -2.39 -0.02 2.54 16 44 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -77.52 373.90 -0.23 -77.75 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -0.31 Total: 12.62 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.84 Total: 13.46 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -8.38 Total: -110.70 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.42 Total: -37.83 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -77.52 -0.23 -77.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599979945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.965 kcal (2) G-P(sol) polarization free energy of solvation -77.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds