Wall clock time and date at job start Tue Mar 31 2020 05:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35800 * 116.99729 * 2 1 4 4 C 1.38840 * 119.92982 * 359.97438 * 3 2 1 5 5 C 1.37783 * 120.15182 * 179.97438 * 4 3 2 6 6 C 1.39710 * 120.00380 * 0.02562 * 5 4 3 7 7 C 1.47608 * 120.07195 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99722 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99770 * 359.97438 * 7 6 5 10 10 C 1.46503 * 119.99721 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47189 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46930 * 304.99963 * 11 10 9 13 13 O 1.42905 * 109.47079 * 64.99736 * 11 10 9 14 14 C 1.52997 * 109.47143 * 184.99897 * 11 10 9 15 15 N 1.46500 * 109.47007 * 179.97438 * 14 11 10 16 16 C 1.36943 * 120.00062 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99847 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99863 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99691 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47023 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47352 * 120.00042 * 20 18 16 23 23 H 1.48504 * 109.46912 * 240.00158 * 20 18 16 24 24 C 1.39727 * 119.85688 * 0.22980 * 6 5 4 25 25 C 1.38145 * 119.85001 * 359.51209 * 24 6 5 26 26 O 1.36006 * 120.00145 * 180.24933 * 25 24 6 27 27 C 1.42892 * 117.00159 * 0.24183 * 26 25 24 28 28 H 1.08990 * 109.47543 * 299.99889 * 1 2 3 29 29 H 1.09002 * 109.46949 * 60.00829 * 1 2 3 30 30 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.91949 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.00154 * 180.02562 * 5 4 3 33 33 H 0.96993 * 120.00520 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47122 * 60.00313 * 10 9 7 35 35 H 1.09005 * 109.47144 * 299.99936 * 10 9 7 36 36 H 0.96702 * 113.99404 * 60.00301 * 13 11 10 37 37 H 1.08992 * 109.47303 * 299.99548 * 14 11 10 38 38 H 1.09002 * 109.47153 * 60.00035 * 14 11 10 39 39 H 0.96998 * 120.00098 * 359.97438 * 15 14 11 40 40 H 0.97001 * 120.00051 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.07614 * 179.74198 * 24 6 5 42 42 H 1.09001 * 109.46978 * 179.97438 * 27 26 25 43 43 H 1.09004 * 109.47123 * 299.99355 * 27 26 25 44 44 H 1.08996 * 109.47428 * 59.99470 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2878 2.3735 -0.0005 5 6 1.9085 3.6036 0.0000 6 6 3.3034 3.6823 0.0005 7 6 3.9699 4.9993 0.0005 8 8 5.1839 5.0662 0.0005 9 7 3.2328 6.1275 -0.0005 10 6 3.8943 7.4347 0.0000 11 6 2.8376 8.5412 -0.0007 12 1 2.1610 8.3968 -0.8431 13 8 2.0958 8.4923 1.2198 14 6 3.5246 9.9025 -0.1258 15 7 2.5127 10.9618 -0.1272 16 6 2.8941 12.2730 -0.2308 17 1 3.9410 12.5260 -0.3111 18 6 1.9352 13.2767 -0.2326 19 7 0.6594 12.9682 -0.1353 20 14 2.4556 15.0652 -0.3747 21 1 3.9353 15.1440 -0.4711 22 1 1.8473 15.6626 -1.5905 23 1 1.9978 15.8107 0.8253 24 6 4.0662 2.5115 -0.0043 25 6 3.4376 1.2814 0.0006 26 8 4.1771 0.1399 0.0010 27 6 5.5984 0.2876 0.0016 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2095 2.3141 -0.0005 32 1 1.3168 4.5070 0.0000 33 1 2.2643 6.0742 -0.0009 34 1 4.5178 7.5267 -0.8892 35 1 4.5158 7.5270 0.8908 36 1 2.6354 8.6136 2.0130 37 1 4.2010 10.0468 0.7165 38 1 4.0903 9.9397 -1.0568 39 1 1.5724 10.7345 -0.0554 40 1 -0.0106 13.6697 -0.1361 41 1 5.1446 2.5683 -0.0081 42 1 6.0660 -0.6970 0.0023 43 1 5.9070 0.8361 -0.8884 44 1 5.9063 0.8364 0.8915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667928953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:58 Heat of formation + Delta-G solvation = -117.649176 kcal Electronic energy + Delta-G solvation = -26498.431044 eV Core-core repulsion = 22417.383137 eV Total energy + Delta-G solvation = -4081.047907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08819 -39.74584 -38.85121 -37.72032 -36.80502 -34.48470 -34.01809 -31.44769 -30.93770 -30.77516 -29.16048 -27.70036 -27.57988 -25.46067 -23.68783 -22.69715 -22.22078 -21.45546 -20.55723 -19.17048 -17.98799 -17.23208 -17.17083 -16.90262 -16.49323 -16.04321 -16.00170 -15.62310 -15.34565 -15.18493 -14.88001 -14.74727 -14.48478 -13.96394 -13.68616 -13.46663 -13.13835 -13.08512 -12.97808 -12.65141 -12.53115 -12.35453 -11.89300 -11.77491 -11.57660 -11.55653 -11.34076 -10.97706 -10.85293 -10.65190 -10.20560 -10.13470 -9.83312 -9.52939 -9.24569 -9.11981 -8.92902 -8.24576 -6.96010 -5.78324 -3.08024 0.53177 0.92749 2.63578 2.79120 2.87284 3.04042 3.42014 3.47654 3.49940 3.52694 4.32248 4.44771 4.49199 4.54577 4.68508 4.70774 4.74243 4.75939 4.85324 4.87591 4.87971 4.94533 5.09697 5.20555 5.22000 5.24669 5.53612 5.56613 5.58289 5.73694 5.81970 5.90811 5.93314 6.12235 6.17382 6.34416 6.48648 6.61002 6.64816 7.12919 7.39810 7.67207 7.91180 8.09565 8.39888 9.51709 10.08113 10.43994 11.44044 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025565 B = 0.001990 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.982513 B =14065.287788 C =15019.184212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.125 3.875 4 C -0.181 4.181 5 C -0.077 4.077 6 C -0.132 4.132 7 C 0.559 3.441 8 O -0.543 6.543 9 N -0.715 5.715 10 C 0.090 3.910 11 C 0.089 3.911 12 H 0.104 0.896 13 O -0.552 6.552 14 C 0.127 3.873 15 N -0.726 5.726 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.114 4.114 25 C 0.089 3.911 26 O -0.306 6.306 27 C 0.023 3.977 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.404 0.596 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.374 0.626 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.389 0.611 40 H 0.255 0.745 41 H 0.149 0.851 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -28.937 0.772 29.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.078 3.922 4 C -0.200 4.200 5 C -0.096 4.096 6 C -0.135 4.135 7 C 0.347 3.653 8 O -0.422 6.422 9 N -0.367 5.367 10 C -0.035 4.035 11 C 0.029 3.971 12 H 0.122 0.878 13 O -0.357 6.357 14 C -0.002 4.002 15 N -0.371 5.371 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.134 4.134 25 C 0.044 3.956 26 O -0.220 6.220 27 C -0.072 4.072 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.221 0.779 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.224 0.776 40 H 0.065 0.935 41 H 0.167 0.833 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.719 -29.199 0.342 29.327 hybrid contribution -0.092 1.395 0.274 1.424 sum 2.627 -27.805 0.616 27.935 Atomic orbital electron populations 1.23150 0.78090 1.04311 1.01617 1.86147 1.21430 1.25817 1.88234 1.18503 0.89148 0.85369 0.99173 1.21018 1.00382 0.91056 1.07545 1.21074 0.93192 0.97780 0.97512 1.19627 0.93411 0.93114 1.07386 1.18098 0.86834 0.83919 0.76484 1.90772 1.13538 1.87560 1.50304 1.45834 1.10659 1.05523 1.74671 1.22152 0.96165 0.81771 1.03362 1.22396 0.93072 0.93329 0.88332 0.87771 1.86571 1.38551 1.95183 1.15423 1.21191 0.92778 0.87338 0.98909 1.42237 1.04817 1.01314 1.88711 1.19268 0.92592 0.82970 1.42595 0.91138 1.24769 0.95280 0.98071 1.02811 1.69687 0.99186 1.31739 1.57173 0.86106 0.77566 0.85182 0.77248 1.20539 1.21823 1.21823 1.21146 1.01216 0.89614 1.01379 1.18072 0.88270 0.86089 1.03191 1.86170 1.19000 1.27665 1.89145 1.23129 0.78239 1.04043 1.01745 0.92330 0.92345 0.87979 0.83919 0.84714 0.75965 0.90223 0.90854 0.77862 0.95886 0.95332 0.77648 0.93519 0.83306 0.87997 0.92391 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.30 -2.92 10.27 -33.77 -0.35 -3.27 16 3 C 0.12 1.26 6.71 -38.93 -0.26 1.00 16 4 C -0.18 -1.51 9.01 -39.53 -0.36 -1.87 16 5 C -0.08 -0.69 9.53 -39.20 -0.37 -1.06 16 6 C -0.13 -1.48 5.87 -104.97 -0.62 -2.10 16 7 C 0.56 7.38 7.76 -12.44 -0.10 7.29 16 8 O -0.54 -8.89 16.34 5.29 0.09 -8.80 16 9 N -0.72 -8.41 5.45 -61.32 -0.33 -8.75 16 10 C 0.09 1.16 5.31 -4.04 -0.02 1.14 16 11 C 0.09 1.32 3.09 -26.73 -0.08 1.24 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 13 O -0.55 -8.52 13.03 -35.23 -0.46 -8.98 16 14 C 0.13 2.41 5.92 -4.04 -0.02 2.39 16 15 N -0.73 -18.17 5.49 -59.91 -0.33 -18.50 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 20 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C -0.11 -1.25 8.58 -39.06 -0.33 -1.59 16 25 C 0.09 0.98 6.69 -39.18 -0.26 0.71 16 26 O -0.31 -3.25 10.28 -34.42 -0.35 -3.60 16 27 C 0.02 0.16 9.81 101.05 0.99 1.15 16 28 H 0.06 0.24 7.65 -51.93 -0.40 -0.15 16 29 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.14 0.80 6.27 -52.49 -0.33 0.47 16 32 H 0.14 0.95 6.39 -52.49 -0.34 0.62 16 33 H 0.40 4.05 6.49 -40.82 -0.26 3.78 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.37 4.85 9.05 45.56 0.41 5.26 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.39 10.42 7.54 -40.82 -0.31 10.11 16 40 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.15 1.58 5.87 -52.49 -0.31 1.27 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 44 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -35.74 373.75 -6.33 -42.06 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.23 Total: 12.33 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.69 Total: 2.00 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.06 Total: -54.73 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -1.07 Total: -24.65 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.74 -6.33 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667928953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.586 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds