Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21279 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00473 * 359.97438 * 13 11 10 15 15 C 1.46507 * 119.99652 * 179.97438 * 13 11 10 16 16 C 1.52998 * 109.46773 * 90.00123 * 15 13 11 17 17 C 1.52997 * 109.47314 * 179.97438 * 16 15 13 18 18 N 1.46497 * 109.47820 * 179.97438 * 17 16 15 19 19 C 1.36939 * 120.00513 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99457 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99857 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00341 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99613 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47035 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47101 * 119.99897 * 23 21 19 26 26 H 1.48500 * 109.46966 * 239.99524 * 23 21 19 27 27 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 28 28 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 29 29 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 30 30 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 31 31 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 32 32 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 33 33 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 34 34 H 1.09000 * 109.47349 * 90.00045 * 14 13 11 35 35 H 1.08999 * 109.47634 * 210.00084 * 14 13 11 36 36 H 1.09004 * 109.47093 * 330.00168 * 14 13 11 37 37 H 1.08998 * 109.47045 * 209.99519 * 15 13 11 38 38 H 1.08994 * 109.47033 * 330.00209 * 15 13 11 39 39 H 1.09000 * 109.47419 * 299.99997 * 16 15 13 40 40 H 1.09005 * 109.47684 * 60.00059 * 16 15 13 41 41 H 1.09000 * 109.47134 * 300.00489 * 17 16 15 42 42 H 1.09002 * 109.47096 * 59.99933 * 17 16 15 43 43 H 0.97003 * 119.99338 * 0.02562 * 18 17 16 44 44 H 0.96998 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6161 -2.2619 2.3430 13 7 0.5965 -4.1127 1.6671 14 6 0.1373 -4.9465 0.5536 15 6 0.3608 -4.5407 3.0483 16 6 -0.9848 -3.9938 3.5291 17 6 -1.2313 -4.4412 4.9713 18 7 -2.5195 -3.9171 5.4319 19 6 -2.9557 -4.1904 6.7008 20 1 -2.3498 -4.7920 7.3622 21 6 -4.1765 -3.6942 7.1369 22 7 -4.9146 -2.9607 6.3311 23 14 -4.7712 -4.0665 8.8682 24 1 -3.7641 -4.9035 9.5683 25 1 -4.9596 -2.7945 9.6111 26 1 -6.0626 -4.7967 8.8017 27 1 -0.3632 0.0003 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 4.3371 2.6891 0.8845 31 1 4.5361 -2.6225 -0.8818 32 1 0.5237 -2.4007 -0.5137 33 1 2.0827 -3.2597 -0.5134 34 1 0.9236 -5.6491 0.2773 35 1 -0.7530 -5.4981 0.8556 36 1 -0.1003 -4.3129 -0.3009 37 1 0.3477 -5.6296 3.0941 38 1 1.1571 -4.1596 3.6876 39 1 -0.9718 -2.9049 3.4833 40 1 -1.7813 -4.3748 2.8898 41 1 -1.2444 -5.5302 5.0167 42 1 -0.4350 -4.0605 5.6109 43 1 -3.0637 -3.3771 4.8376 44 1 -5.7675 -2.6137 6.6360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670291130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = -46.906581 kcal Electronic energy + Delta-G solvation = -27268.006959 eV Core-core repulsion = 23222.319433 eV Total energy + Delta-G solvation = -4045.687527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83196 -39.95688 -38.54621 -37.41512 -36.23357 -34.86061 -34.52200 -33.14841 -32.18556 -30.14096 -29.43012 -27.69584 -27.00742 -25.16772 -23.71250 -23.16478 -22.45971 -20.95369 -19.69937 -19.27947 -18.93917 -18.40215 -17.33711 -17.04931 -16.45504 -16.11134 -15.71381 -15.63710 -14.83572 -14.59690 -14.37245 -14.17814 -14.07711 -13.52918 -13.50326 -13.22333 -13.07594 -13.00965 -12.81843 -12.72208 -12.62906 -12.29486 -12.02050 -11.94150 -11.79800 -11.19205 -10.93876 -10.85990 -10.74185 -10.68969 -10.41590 -10.08964 -9.98733 -9.72105 -9.60218 -9.37660 -8.86255 -8.73432 -6.90531 -5.75171 -3.03725 0.33194 0.59424 2.50115 2.52210 2.81681 3.04926 3.35640 3.44382 3.49944 3.52326 3.89124 4.16694 4.32666 4.40089 4.54963 4.61028 4.82225 4.84814 4.99396 5.05738 5.11460 5.22639 5.30903 5.39061 5.43392 5.45718 5.51402 5.57838 5.68106 5.85875 5.89826 6.06963 6.29159 6.38087 6.40330 6.48415 6.85636 6.88170 6.91873 7.07707 7.25193 7.63553 7.71928 8.07110 8.43891 9.54877 10.13166 10.47794 11.48015 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002461 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.671012 B =11373.527667 C =12209.782119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.226 3.774 3 N -0.528 5.528 4 C 0.520 3.480 5 O -0.458 6.458 6 N -0.553 5.553 7 C 0.398 3.602 8 O -0.467 6.467 9 C -0.197 4.197 10 C -0.088 4.088 11 C 0.516 3.484 12 O -0.526 6.526 13 N -0.614 5.614 14 C 0.075 3.925 15 C 0.119 3.881 16 C -0.138 4.138 17 C 0.156 3.844 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.414 0.586 31 H 0.406 0.594 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.887 0.316 -21.909 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 N -0.255 5.255 4 C 0.216 3.784 5 O -0.261 6.261 6 N -0.289 5.289 7 C 0.211 3.789 8 O -0.274 6.274 9 C -0.203 4.203 10 C -0.128 4.128 11 C 0.303 3.697 12 O -0.402 6.402 13 N -0.348 5.348 14 C -0.068 4.068 15 C -0.004 4.004 16 C -0.177 4.177 17 C 0.028 3.972 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.274 0.726 31 H 0.266 0.734 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.590 1.505 -21.226 26.983 hybrid contribution -0.696 -0.775 0.774 1.298 sum 15.894 0.730 -20.452 25.912 Atomic orbital electron populations 1.20951 0.86869 1.04339 1.04960 1.21299 0.97570 0.85825 0.87162 1.67875 1.08853 1.31039 1.17745 1.19809 0.83679 0.84551 0.90388 1.84689 1.76107 1.30693 1.34632 1.67373 1.43833 0.98619 1.19074 1.18818 0.86103 0.84629 0.89384 1.84802 1.73854 1.34831 1.33909 1.20952 0.93911 0.97092 1.08332 1.20479 1.02090 0.93985 0.96280 1.20282 0.77820 0.80924 0.90687 1.90757 1.50211 1.53118 1.46086 1.47872 1.57641 1.21530 1.07764 1.21850 1.00431 0.95308 0.89259 1.21508 0.98589 0.99304 0.80962 1.22048 0.95871 1.01690 0.98080 1.20540 0.89521 0.96027 0.91128 1.42356 1.18529 1.62593 1.14278 1.19293 1.01194 1.26354 0.90053 0.91110 1.24750 0.97481 1.00617 0.98312 1.69670 1.13585 1.39694 1.35368 0.86104 0.78380 0.77421 0.84235 1.20541 1.21849 1.21863 0.88391 0.89212 0.89669 0.72567 0.73443 0.87039 0.87485 0.92444 0.90367 0.91169 0.90412 0.89795 0.91644 0.91960 0.96389 0.96254 0.78345 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.83 36.01 0.35 -0.61 16 2 C 0.23 2.51 6.82 -82.33 -0.56 1.95 16 3 N -0.53 -6.68 10.40 -11.01 -0.11 -6.79 16 4 C 0.52 6.52 8.71 -91.28 -0.80 5.72 16 5 O -0.46 -4.70 13.64 -18.07 -0.25 -4.95 16 6 N -0.55 -7.11 10.49 -14.79 -0.16 -7.26 16 7 C 0.40 4.49 7.81 -16.71 -0.13 4.36 16 8 O -0.47 -4.16 12.74 -18.23 -0.23 -4.39 16 9 C -0.20 -2.04 4.42 -104.20 -0.46 -2.50 16 10 C -0.09 -0.67 3.84 -29.03 -0.11 -0.78 16 11 C 0.52 6.25 7.67 -10.98 -0.08 6.16 16 12 O -0.53 -9.01 15.61 5.56 0.09 -8.92 16 13 N -0.61 -6.57 2.87 -181.57 -0.52 -7.09 16 14 C 0.07 0.47 10.24 59.84 0.61 1.08 16 15 C 0.12 1.55 5.41 -4.04 -0.02 1.53 16 16 C -0.14 -2.26 5.65 -26.73 -0.15 -2.41 16 17 C 0.16 3.21 6.26 -4.04 -0.03 3.18 16 18 N -0.73 -19.20 5.60 -59.91 -0.34 -19.54 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 23 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.49 6.06 -51.93 -0.31 0.18 16 30 H 0.41 2.24 9.06 45.56 0.41 2.65 16 31 H 0.41 1.13 9.06 45.56 0.41 1.54 16 32 H 0.11 0.56 5.33 -51.92 -0.28 0.28 16 33 H 0.11 0.51 7.59 -51.93 -0.39 0.12 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.07 0.27 6.44 -51.93 -0.33 -0.06 16 37 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 44 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -40.38 375.33 -6.32 -46.70 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.54 Total: 6.71 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -1.62 Total: 10.14 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -0.40 Total: -68.67 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.39 Total: -18.26 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.38 -6.32 -46.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670291130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.206 kcal (2) G-P(sol) polarization free energy of solvation -40.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds