Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86806 * 120.00184 * 2 1 4 4 H 1.48502 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47064 * 300.00158 * 3 2 1 6 6 H 1.48499 * 109.46517 * 60.00121 * 3 2 1 7 7 C 1.38956 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14 19 19 H 1.09009 * 110.85809 * 51.20889 * 18 17 16 20 20 C 1.54630 * 110.97107 * 287.38099 * 18 17 16 21 21 C 1.51282 * 104.19596 * 217.08387 * 20 18 17 22 22 O 1.21287 * 124.94228 * 196.24932 * 21 20 18 23 23 N 1.34416 * 110.11597 * 16.24638 * 21 20 18 24 24 C 1.46501 * 124.34934 * 180.42810 * 23 21 20 25 25 C 1.53000 * 117.50110 * 8.60404 * 24 23 21 26 26 C 1.52998 * 117.50343 * 299.97906 * 24 23 21 27 27 C 1.46766 * 111.30370 * 0.41208 * 23 21 20 28 28 H 0.97001 * 119.99576 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.46995 * 60.00543 * 12 10 9 31 31 H 1.08994 * 109.46942 * 300.00312 * 12 10 9 32 32 H 0.97003 * 120.00113 * 0.02562 * 13 12 10 33 33 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 34 34 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 35 35 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 36 36 H 1.09003 * 110.48149 * 335.75755 * 20 18 17 37 37 H 1.08995 * 110.49107 * 98.40360 * 20 18 17 38 38 H 1.09009 * 115.54842 * 154.30898 * 24 23 21 39 39 H 1.09007 * 117.49412 * 359.97438 * 25 24 23 40 40 H 1.08994 * 117.50037 * 145.01564 * 25 24 23 41 41 H 1.08998 * 117.50004 * 214.98198 * 26 24 23 42 42 H 1.09004 * 117.49253 * 359.97438 * 26 24 23 43 43 H 1.08995 * 110.24636 * 223.98652 * 27 23 21 44 44 H 1.09001 * 110.32086 * 102.01570 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 7 2.1957 -5.9765 -0.0027 14 6 1.7464 -7.2472 -0.0038 15 8 0.5510 -7.4693 -0.0039 16 7 2.6222 -8.2715 -0.0037 17 6 2.1338 -9.6528 -0.0054 18 6 3.3237 -10.6145 -0.0056 19 1 4.0262 -10.3629 0.7891 20 6 4.0262 -10.6255 -1.3831 21 6 4.4352 -12.0686 -1.5795 22 8 5.2487 -12.4558 -2.3916 23 7 3.7661 -12.8594 -0.7230 24 6 3.9299 -14.3129 -0.6396 25 6 5.0679 -14.9429 -1.4452 26 6 3.6173 -15.1322 -1.8933 27 6 2.8504 -12.0798 0.1183 28 1 -0.4849 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6167 -4.9201 -0.8920 31 1 0.6173 -4.9212 0.8879 32 1 3.1494 -5.7992 -0.0022 33 1 3.5758 -8.0944 -0.0032 34 1 1.5273 -9.8248 0.8838 35 1 1.5292 -9.8233 -0.8962 36 1 3.3347 -10.3150 -2.1664 37 1 4.9035 -9.9788 -1.3692 38 1 3.6895 -14.7585 0.3258 39 1 5.6944 -14.2759 -2.0377 40 1 5.5765 -15.8030 -1.0100 41 1 3.1715 -16.1169 -1.7528 42 1 3.2892 -14.5898 -2.7801 43 1 2.9161 -12.4109 1.1547 44 1 1.8272 -12.1775 -0.2444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672526119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -93.561448 kcal Electronic energy + Delta-G solvation = -26191.679943 eV Core-core repulsion = 22143.969310 eV Total energy + Delta-G solvation = -4047.710633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80115 -41.07982 -39.98579 -37.99053 -37.66232 -36.22221 -35.47608 -35.21128 -33.35094 -32.17504 -29.57256 -28.81798 -26.75174 -25.69626 -23.93915 -23.35251 -21.99891 -21.86074 -21.32189 -20.22510 -20.06606 -19.43755 -18.11998 -17.71947 -17.36670 -17.12527 -16.85152 -16.45956 -16.14296 -15.96638 -15.87693 -15.61361 -15.21485 -15.10656 -14.96837 -14.74547 -14.26970 -13.99988 -13.91140 -13.74996 -13.53092 -13.35778 -12.97555 -12.88988 -12.54084 -12.42473 -12.28262 -12.20989 -12.10232 -11.79044 -11.55846 -11.43333 -11.34362 -10.59350 -10.52428 -10.36699 -10.07697 -9.75424 -9.54212 -8.49342 -5.99182 1.36665 1.43778 1.44314 1.56193 1.62209 1.92787 1.92799 2.18422 2.30392 2.87433 3.07051 3.18270 3.26419 3.30070 3.51775 3.72595 3.80795 3.94481 4.00664 4.16989 4.24597 4.32689 4.48444 4.50928 4.55208 4.61336 4.65845 4.74069 4.76762 4.80368 4.93004 5.01481 5.16135 5.25830 5.35914 5.41410 5.52753 5.68309 5.94040 6.00706 6.07010 6.50613 7.05985 7.08504 7.09654 7.46014 7.59347 7.97478 8.67738 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.039115 B = 0.001699 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.663649 B =16475.833678 C =16939.147349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.726 5.726 14 C 0.705 3.295 15 O -0.632 6.632 16 N -0.731 5.731 17 C 0.152 3.848 18 C -0.095 4.095 19 H 0.120 0.880 20 C -0.150 4.150 21 C 0.506 3.494 22 O -0.573 6.573 23 N -0.592 5.592 24 C 0.080 3.920 25 C -0.205 4.205 26 C -0.190 4.190 27 C 0.113 3.887 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.163 0.837 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -27.541 2.641 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.383 5.383 14 C 0.404 3.596 15 O -0.513 6.513 16 N -0.388 5.388 17 C 0.028 3.972 18 C -0.114 4.114 19 H 0.138 0.862 20 C -0.190 4.190 21 C 0.296 3.704 22 O -0.454 6.454 23 N -0.323 5.323 24 C -0.023 4.023 25 C -0.242 4.242 26 C -0.228 4.228 27 C -0.009 4.009 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.247 0.753 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.180 0.820 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.016 -27.848 2.252 28.226 hybrid contribution 0.607 1.148 -0.368 1.349 sum 4.623 -26.700 1.884 27.163 Atomic orbital electron populations 1.69685 1.06974 1.29505 1.49441 1.26108 0.96518 1.02622 0.95867 0.84819 0.78127 0.76828 0.78239 1.19469 1.19758 1.19684 1.19774 0.92962 0.83586 1.50254 0.89577 1.41842 1.09599 1.04604 1.63544 1.20475 0.88133 0.85964 0.83352 1.90471 1.15200 1.87586 1.57963 1.20563 0.91005 0.83033 1.04036 1.44701 1.10977 1.03384 1.79263 1.15922 0.85141 0.80751 0.77741 1.90894 1.15700 1.84702 1.60040 1.44879 1.09327 1.04784 1.79807 1.21198 0.95166 0.77723 1.03091 1.22292 0.97421 0.94201 0.97465 0.86224 1.22523 1.03749 0.93190 0.99552 1.21481 0.79495 0.90088 0.79369 1.90612 1.36090 1.80244 1.38453 1.47827 1.41102 1.06093 1.37251 1.21899 1.04345 0.78245 0.97789 1.23669 0.92786 1.03583 1.04160 1.23351 0.98784 1.02385 0.98285 1.22233 0.93410 0.88397 0.96892 0.91124 0.76695 0.89139 0.88973 0.75217 0.75293 0.90206 0.91665 0.87382 0.87041 0.81969 0.88406 0.86612 0.85841 0.91049 0.86848 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.16 13.05 21.66 0.28 -47.88 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.37 29.55 68.60 2.03 43.40 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.34 -18.30 9.68 84.04 0.81 -17.49 16 8 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.56 -27.62 5.29 -306.97 -1.62 -29.25 16 10 C 0.43 19.46 7.85 87.66 0.69 20.15 16 11 O -0.62 -31.36 15.24 -3.08 -0.05 -31.41 16 12 C 0.14 4.99 6.15 85.63 0.53 5.52 16 13 N -0.73 -22.04 5.53 -482.30 -2.67 -24.71 16 14 C 0.70 19.69 8.57 179.05 1.53 21.23 16 15 O -0.63 -22.16 16.34 -3.98 -0.07 -22.23 16 16 N -0.73 -12.72 5.50 -478.53 -2.63 -15.35 16 17 C 0.15 1.89 4.98 86.38 0.43 2.32 16 18 C -0.09 -0.69 3.16 -9.74 -0.03 -0.73 16 19 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 20 C -0.15 -1.83 6.36 30.59 0.19 -1.64 16 21 C 0.51 9.44 7.88 87.90 0.69 10.13 16 22 O -0.57 -15.76 14.69 -3.05 -0.04 -15.80 16 23 N -0.59 -7.58 3.27 -794.02 -2.60 -10.18 16 24 C 0.08 0.92 6.88 44.99 0.31 1.23 16 25 C -0.20 -3.12 9.77 30.59 0.30 -2.82 16 26 C -0.19 -2.49 10.34 30.59 0.32 -2.17 16 27 C 0.11 0.70 6.92 86.83 0.60 1.30 16 28 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 29 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 30 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.41 12.08 7.45 -92.71 -0.69 11.39 16 33 H 0.41 5.21 8.49 -92.71 -0.79 4.43 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 0.95 7.93 -2.39 -0.02 0.93 16 36 H 0.11 1.39 7.75 -2.39 -0.02 1.38 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.16 0.77 8.14 -2.38 -0.02 0.76 16 39 H 0.10 2.25 5.30 -2.38 -0.01 2.23 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.09 0.46 7.89 -2.39 -0.02 0.44 16 Total: -1.00 -75.57 373.42 -1.67 -77.24 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -1.14 Total: 39.22 kcal Atomic # 6 Polarization: 30.11 SS G_CDS: 6.84 Total: 36.95 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -9.24 Total: -127.36 kcal Atomic # 8 Polarization: -69.29 SS G_CDS: -0.16 Total: -69.44 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -75.57 -1.67 -77.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672526119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.318 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds