Wall clock time and date at job start Tue Mar 31 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00515 * 2 1 4 4 H 1.48506 * 109.46806 * 270.00067 * 3 2 1 5 5 H 1.48503 * 109.46848 * 29.99708 * 3 2 1 6 6 H 1.48499 * 109.47358 * 150.00065 * 3 2 1 7 7 C 1.38955 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00345 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99838 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00233 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99841 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00199 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46994 * 180.02562 * 12 10 9 14 14 C 1.46843 * 110.99862 * 189.99843 * 13 12 10 15 15 C 1.53246 * 109.42032 * 172.08936 * 14 13 12 16 16 C 1.52591 * 109.01107 * 56.62105 * 15 14 13 17 17 C 1.52890 * 114.17164 * 79.33675 * 16 15 14 18 18 N 1.47168 * 87.83267 * 139.55845 * 17 16 15 19 19 C 1.34777 * 135.99457 * 153.40015 * 18 17 16 20 20 O 1.21343 * 120.00084 * 359.97438 * 19 18 17 21 21 C 1.49454 * 120.00164 * 179.97438 * 19 18 17 22 22 N 1.34773 * 120.00135 * 180.27489 * 21 19 18 23 23 O 1.21353 * 119.99759 * 359.97438 * 21 19 18 24 24 C 1.47182 * 88.01389 * 333.64911 * 18 17 16 25 25 C 1.52599 * 113.07396 * 306.56342 * 16 15 14 26 26 C 1.46828 * 111.00195 * 65.42918 * 13 12 10 27 27 H 0.97001 * 119.99721 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00152 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47387 * 60.00098 * 12 10 9 30 30 H 1.09004 * 109.47191 * 299.99810 * 12 10 9 31 31 H 1.09004 * 109.47687 * 52.10439 * 14 13 12 32 32 H 1.09001 * 109.48694 * 292.07930 * 14 13 12 33 33 H 1.09003 * 109.54948 * 296.76169 * 15 14 13 34 34 H 1.09001 * 109.62427 * 176.52343 * 15 14 13 35 35 H 1.08999 * 113.49035 * 24.81400 * 17 16 15 36 36 H 1.08998 * 113.49056 * 254.30018 * 17 16 15 37 37 H 0.96998 * 120.00530 * 179.72563 * 22 21 19 38 38 H 0.97001 * 120.00114 * 359.71542 * 22 21 19 39 39 H 1.09004 * 113.49130 * 141.09900 * 24 18 17 40 40 H 1.08994 * 113.49106 * 271.60854 * 24 18 17 41 41 H 1.09000 * 109.54264 * 173.29173 * 25 16 15 42 42 H 1.08995 * 109.54798 * 293.56824 * 25 16 15 43 43 H 1.09007 * 109.47976 * 307.88364 * 26 13 12 44 44 H 1.08997 * 109.48299 * 67.91360 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2035 0.0005 8 1 1.4687 -2.1388 0.0005 9 7 3.3797 -1.2036 0.0000 10 6 4.0536 -2.3708 0.0011 11 8 3.4470 -3.4212 0.0020 12 6 5.5606 -2.3709 0.0011 13 7 6.0501 -3.7559 0.0017 14 6 7.4984 -3.8020 0.2397 15 6 7.9374 -5.2579 0.4298 16 6 7.5217 -6.0665 -0.7957 17 6 8.4502 -5.9014 -1.9991 18 7 8.3038 -7.3459 -2.2394 19 6 8.3816 -8.1637 -3.3080 20 8 8.6292 -7.7071 -4.4046 21 6 8.1627 -9.6328 -3.1422 22 7 8.2459 -10.4512 -4.2097 23 8 7.9155 -10.0894 -2.0454 24 6 8.0292 -7.5052 -0.8023 25 6 6.0385 -5.9298 -1.1274 26 6 5.6881 -4.4426 -1.2446 27 1 -0.4850 0.8401 0.0004 28 1 3.8648 -0.3636 -0.0004 29 1 5.9240 -1.8563 0.8905 30 1 5.9240 -1.8579 -0.8894 31 1 7.7377 -3.2301 1.1363 32 1 8.0212 -3.3733 -0.6153 33 1 7.4590 -5.6701 1.3182 34 1 9.0204 -5.3016 0.5453 35 1 9.4640 -5.6064 -1.7284 36 1 8.0281 -5.2840 -2.7921 37 1 8.1078 -11.4052 -4.1015 38 1 8.4438 -10.0862 -5.0864 39 1 7.2525 -8.2392 -0.5871 40 1 8.9270 -7.6521 -0.2020 41 1 5.8288 -6.4296 -2.0731 42 1 5.4441 -6.3832 -0.3341 43 1 4.6180 -4.3342 -1.4217 44 1 6.2404 -4.0034 -2.0753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673013354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:02 Heat of formation + Delta-G solvation = -49.084145 kcal Electronic energy + Delta-G solvation = -27691.412609 eV Core-core repulsion = 23645.630656 eV Total energy + Delta-G solvation = -4045.781953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55190 -40.05656 -38.75791 -38.17245 -36.75797 -34.13559 -33.93409 -32.44940 -31.64925 -30.91138 -28.98211 -26.99431 -26.26005 -24.50923 -23.75276 -23.31339 -21.59500 -20.03294 -19.36054 -18.48988 -18.35496 -18.21547 -17.51527 -16.65824 -16.48689 -15.97242 -15.48767 -15.29468 -15.23448 -15.03289 -14.84695 -14.24605 -14.08242 -13.74448 -13.70378 -13.34603 -13.13990 -12.90624 -12.63140 -12.50880 -12.31013 -12.12829 -11.89892 -11.80615 -11.45093 -11.15530 -11.13547 -10.64850 -10.58572 -10.46905 -10.44459 -10.28006 -9.97001 -9.83643 -9.52018 -9.13459 -8.53639 -8.17331 -7.92801 -6.30524 -3.81762 1.10754 1.97387 2.89982 3.02691 3.06760 3.15239 3.24124 3.74561 3.84507 4.01854 4.10739 4.16668 4.48156 4.61197 4.75660 4.85196 4.96602 5.16727 5.17871 5.21991 5.27345 5.36306 5.43783 5.47131 5.50792 5.57810 5.68427 5.76851 5.78706 5.90693 5.94653 5.98735 6.10341 6.12424 6.34433 6.44716 6.57917 7.16363 7.20858 7.35308 7.36230 7.59532 7.69032 8.15561 8.61010 8.96138 9.43352 9.84442 10.82642 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.002433 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.045481 B =11506.561169 C =11880.731595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.452 3.548 11 O -0.558 6.558 12 C 0.044 3.956 13 N -0.516 5.516 14 C 0.056 3.944 15 C -0.094 4.094 16 C -0.094 4.094 17 C 0.112 3.888 18 N -0.615 5.615 19 C 0.531 3.469 20 O -0.526 6.526 21 C 0.518 3.482 22 N -0.824 5.824 23 O -0.516 6.516 24 C 0.113 3.887 25 C -0.084 4.084 26 C 0.054 3.946 27 H 0.273 0.727 28 H 0.370 0.630 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.411 0.589 38 H 0.414 0.586 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.980 -13.027 -4.095 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.238 3.762 11 O -0.440 6.440 12 C -0.087 4.087 13 N -0.240 5.240 14 C -0.072 4.072 15 C -0.132 4.132 16 C -0.095 4.095 17 C -0.010 4.010 18 N -0.349 5.349 19 C 0.315 3.685 20 O -0.403 6.403 21 C 0.296 3.704 22 N -0.391 5.391 23 O -0.390 6.390 24 C -0.009 4.009 25 C -0.121 4.121 26 C -0.073 4.073 27 H 0.084 0.916 28 H 0.202 0.798 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.244 0.756 38 H 0.244 0.756 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 21.126 -13.896 -3.719 25.558 hybrid contribution 1.104 1.603 -1.105 2.239 sum 22.230 -12.292 -4.824 25.856 Atomic orbital electron populations 1.69624 1.05637 1.27459 1.49471 1.25043 0.95490 0.97969 0.97720 0.86676 0.79804 0.84098 0.78830 1.19704 1.20204 1.19472 1.19423 0.79230 0.96595 1.47972 0.86269 1.42227 1.07534 1.06173 1.67215 1.19667 0.88142 0.84514 0.83876 1.90529 1.69368 1.30747 1.53358 1.21860 0.95483 0.89852 1.01541 1.61364 1.11849 1.14305 1.36510 1.22107 0.88123 0.96446 1.00516 1.21400 1.00164 0.94598 0.97055 1.21896 0.96833 0.95242 0.95567 1.23259 1.00018 0.80501 0.97182 1.49322 1.67020 1.09939 1.08643 1.19569 0.78731 0.86645 0.83556 1.90775 1.48256 1.76766 1.24458 1.20041 0.77689 0.87718 0.84938 1.43515 1.72905 1.11193 1.11456 1.90814 1.46010 1.77126 1.25061 1.23181 1.01076 0.97644 0.79005 1.21246 0.91806 0.96978 1.02115 1.22267 1.03617 0.92786 0.88643 0.91642 0.79754 0.89202 0.93468 0.90516 0.95161 0.89801 0.91076 0.89104 0.89867 0.75647 0.75604 0.88813 0.89087 0.91723 0.89744 0.87559 0.96010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 3 Si 0.88 19.22 27.74 -169.99 -4.71 14.50 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 10 C 0.45 9.97 7.44 -10.99 -0.08 9.89 16 11 O -0.56 -14.43 13.89 5.54 0.08 -14.35 16 12 C 0.04 0.70 5.45 -4.98 -0.03 0.68 16 13 N -0.52 -7.60 4.35 -235.86 -1.03 -8.63 16 14 C 0.06 0.59 5.45 -3.73 -0.02 0.57 16 15 C -0.09 -0.81 5.34 -26.81 -0.14 -0.95 16 16 C -0.09 -0.91 0.85 -155.21 -0.13 -1.04 16 17 C 0.11 1.06 7.67 -8.18 -0.06 0.99 16 18 N -0.61 -6.60 3.48 -185.88 -0.65 -7.25 16 19 C 0.53 6.26 8.14 -11.58 -0.09 6.16 16 20 O -0.53 -7.21 17.25 5.50 0.09 -7.12 16 21 C 0.52 5.36 8.16 -11.59 -0.09 5.26 16 22 N -0.82 -5.32 8.87 30.91 0.27 -5.04 16 23 O -0.52 -6.48 16.05 5.49 0.09 -6.39 16 24 C 0.11 1.04 6.75 -8.34 -0.06 0.99 16 25 C -0.08 -1.05 5.27 -26.81 -0.14 -1.19 16 26 C 0.05 0.81 5.09 -3.74 -0.02 0.79 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 29 H 0.09 1.25 7.96 -51.93 -0.41 0.84 16 30 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.44 8.02 -51.93 -0.42 0.02 16 35 H 0.09 0.68 8.01 -51.93 -0.42 0.26 16 36 H 0.08 0.87 7.78 -51.93 -0.40 0.47 16 37 H 0.41 1.76 8.93 -40.82 -0.36 1.40 16 38 H 0.41 2.15 8.30 -40.82 -0.34 1.81 16 39 H 0.09 0.96 7.38 -51.93 -0.38 0.58 16 40 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.11 2.02 5.73 -51.93 -0.30 1.72 16 44 H 0.02 0.30 7.81 -51.93 -0.41 -0.10 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -35.23 360.66 -6.99 -42.22 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.17 Total: 10.92 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -1.12 Total: 14.52 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.68 Total: -59.74 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: 0.26 Total: -27.86 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.23 -6.99 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673013354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.865 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds