Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00447 * 2 1 4 4 H 1.48503 * 109.46918 * 89.99968 * 3 2 1 5 5 H 1.48497 * 109.47281 * 210.00077 * 3 2 1 6 6 H 1.48501 * 109.47032 * 330.00344 * 3 2 1 7 7 C 1.38817 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99680 * 151.96782 * 7 2 1 9 9 N 1.36938 * 119.99907 * 331.96625 * 7 2 1 10 10 C 1.47421 * 125.64902 * 343.18757 * 9 7 2 11 11 C 1.54906 * 104.83194 * 204.09053 * 10 9 7 12 12 C 1.55160 * 101.58477 * 322.99632 * 11 10 9 13 13 H 1.09003 * 110.71385 * 277.13566 * 12 11 10 14 14 C 1.52998 * 110.72176 * 153.86429 * 12 11 10 15 15 C 1.53003 * 109.46852 * 174.99926 * 14 12 11 16 16 N 1.46504 * 109.46831 * 180.02562 * 15 14 12 17 17 C 1.34771 * 119.99564 * 180.02562 * 16 15 14 18 18 O 1.21276 * 120.00669 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99773 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.46355 * 39.97453 * 19 17 16 21 21 C 1.53047 * 109.46474 * 280.00023 * 19 17 16 22 22 C 1.50808 * 109.18159 * 286.68252 * 21 19 17 23 23 O 1.21227 * 120.01887 * 145.74484 * 22 21 19 24 24 N 1.34564 * 119.96452 * 325.76034 * 22 21 19 25 25 C 1.34339 * 120.98855 * 4.44187 * 24 22 21 26 26 O 1.21536 * 119.20892 * 192.03612 * 25 24 22 27 27 N 1.34288 * 121.58324 * 12.01735 * 25 24 22 28 28 C 1.47026 * 125.64403 * 162.88249 * 9 7 2 29 29 H 0.96995 * 120.00466 * 173.96199 * 1 2 3 30 30 H 1.08993 * 110.36738 * 322.93420 * 10 9 7 31 31 H 1.09001 * 110.36463 * 85.25884 * 10 9 7 32 32 H 1.09001 * 111.00099 * 81.06953 * 11 10 9 33 33 H 1.08997 * 111.00839 * 204.88019 * 11 10 9 34 34 H 1.08998 * 109.46772 * 294.99699 * 14 12 11 35 35 H 1.08994 * 109.47069 * 55.00182 * 14 12 11 36 36 H 1.08998 * 109.47247 * 299.99482 * 15 14 12 37 37 H 1.08994 * 109.47288 * 59.99750 * 15 14 12 38 38 H 0.97002 * 120.00029 * 359.97438 * 16 15 14 39 39 H 1.08998 * 109.51362 * 46.59163 * 21 19 17 40 40 H 1.08994 * 109.51953 * 166.71205 * 21 19 17 41 41 H 0.97003 * 119.50503 * 184.41128 * 24 22 21 42 42 H 0.97001 * 119.53838 * 185.71430 * 27 25 24 43 43 H 1.08995 * 109.88283 * 298.39127 * 28 9 7 44 44 H 1.08996 * 109.88163 * 59.55965 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 2.9952 -1.2569 -0.4401 9 7 1.4459 -2.3188 0.5563 10 6 0.2981 -2.3311 1.4814 11 6 0.4418 -3.6542 2.2740 12 6 0.9751 -4.6165 1.1799 13 1 0.1548 -5.0105 0.5799 14 6 1.7840 -5.7538 1.8068 15 6 2.1896 -6.7508 0.7193 16 7 2.9637 -7.8401 1.3197 17 6 3.4303 -8.8407 0.5468 18 8 3.2091 -8.8396 -0.6457 19 6 4.2271 -9.9610 1.1642 20 1 3.7877 -10.2331 2.1239 21 6 5.6718 -9.5025 1.3766 22 6 6.3735 -9.4418 0.0431 23 8 7.2131 -8.5919 -0.1623 24 7 6.0669 -10.3315 -0.9188 25 6 5.0787 -11.2248 -0.7452 26 8 4.9697 -12.1482 -1.5278 27 7 4.2085 -11.1220 0.2724 28 6 1.8806 -3.7043 0.3257 29 1 -0.4850 -0.8353 -0.0884 30 1 0.3461 -1.4771 2.1568 31 1 -0.6385 -2.3228 0.9238 32 1 1.1621 -3.5474 3.0852 33 1 -0.5235 -3.9894 2.6532 34 1 2.6784 -5.3465 2.2782 35 1 1.1770 -6.2611 2.5566 36 1 1.2952 -7.1581 0.2480 37 1 2.7966 -6.2435 -0.0305 38 1 3.1410 -7.8408 2.2734 39 1 5.6762 -8.5139 1.8358 40 1 6.1861 -10.2090 2.0279 41 1 6.5667 -10.3275 -1.7502 42 1 3.5587 -11.8271 0.4190 43 1 1.7735 -3.9556 -0.7294 44 1 2.9194 -3.8230 0.6337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691912339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = -79.668752 kcal Electronic energy + Delta-G solvation = -27391.539629 eV Core-core repulsion = 23344.431428 eV Total energy + Delta-G solvation = -4047.108201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27744 -39.94848 -39.23804 -38.11721 -36.37543 -35.51027 -34.70288 -33.36353 -31.73590 -30.75256 -29.09057 -27.30901 -25.92141 -24.47263 -23.91119 -22.59082 -21.67346 -20.40747 -20.20145 -19.57287 -18.69846 -18.39496 -17.61173 -17.48932 -16.86521 -16.50746 -16.02825 -15.90804 -15.37345 -15.05956 -14.84173 -14.65490 -14.18683 -14.06600 -13.81882 -13.69470 -13.11888 -13.02904 -12.92560 -12.69831 -12.09305 -11.95497 -11.78114 -11.24541 -11.17473 -10.90599 -10.73376 -10.70726 -10.61088 -10.47961 -10.35337 -10.26040 -10.07252 -9.99939 -9.69359 -9.50553 -9.41304 -8.38862 -6.92029 -6.08299 -3.12825 1.26462 1.89556 2.13203 2.40263 2.76213 2.85658 3.52504 3.54305 3.64955 3.71168 3.78834 4.06928 4.26357 4.46244 4.60204 4.68702 4.73610 4.90827 5.08504 5.26763 5.38313 5.40961 5.44469 5.56978 5.70702 5.76267 5.79474 5.91167 6.01548 6.09971 6.16548 6.21892 6.32002 6.39910 6.63071 6.76212 6.82108 6.98090 7.03338 7.04135 7.05413 7.70084 7.74681 7.82898 8.51067 9.04742 9.83550 10.39402 11.24329 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.002340 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.395493 B =11964.411714 C =12661.864769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.027 4.027 3 Si 1.067 2.933 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.143 3.857 11 C -0.129 4.129 12 C -0.098 4.098 13 H 0.074 0.926 14 C -0.115 4.115 15 C 0.116 3.884 16 N -0.720 5.720 17 C 0.485 3.515 18 O -0.517 6.517 19 C 0.122 3.878 20 H 0.136 0.864 21 C -0.150 4.150 22 C 0.523 3.477 23 O -0.491 6.491 24 N -0.670 5.670 25 C 0.726 3.274 26 O -0.554 6.554 27 N -0.707 5.707 28 C 0.139 3.861 29 H 0.269 0.731 30 H 0.050 0.950 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.402 0.598 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.429 0.571 42 H 0.428 0.572 43 H 0.021 0.979 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 -24.399 10.319 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.228 4.228 3 Si 0.897 3.103 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.464 4.464 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.018 3.982 11 C -0.168 4.168 12 C -0.118 4.118 13 H 0.092 0.908 14 C -0.153 4.153 15 C -0.007 4.007 16 N -0.372 5.372 17 C 0.267 3.733 18 O -0.391 6.391 19 C 0.011 3.989 20 H 0.154 0.846 21 C -0.191 4.191 22 C 0.310 3.690 23 O -0.362 6.362 24 N -0.340 5.340 25 C 0.426 3.574 26 O -0.428 6.428 27 N -0.366 5.366 28 C 0.013 3.987 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.236 0.764 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.270 0.730 42 H 0.268 0.732 43 H 0.039 0.961 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.728 -22.552 9.050 25.500 hybrid contribution 0.079 -1.816 0.037 1.819 sum 7.807 -24.369 9.086 27.154 Atomic orbital electron populations 1.70746 1.06659 1.30235 1.48337 1.25748 0.96444 1.01074 0.99554 0.83483 0.74514 0.75826 0.76481 1.22093 1.21872 1.21631 1.19792 0.99566 0.88063 1.38977 0.91756 1.44586 1.36591 1.00734 1.51201 1.21521 0.91070 0.94290 0.91360 1.22841 0.99813 0.96940 0.97180 1.22095 0.98023 0.94157 0.97487 0.90765 1.21773 1.00666 0.95675 0.97226 1.21565 0.95694 0.86675 0.96724 1.46036 1.55365 1.24098 1.11739 1.20977 0.80833 0.83633 0.87831 1.90807 1.56914 1.76660 1.14763 1.21094 0.95806 0.86420 0.95545 0.84591 1.22260 0.93393 1.07592 0.95822 1.20738 0.82393 0.79714 0.86189 1.90840 1.31791 1.32987 1.80627 1.44158 1.34797 1.33682 1.21353 1.15506 0.79118 0.81612 0.81183 1.91051 1.74637 1.33164 1.43912 1.44722 1.37355 1.23411 1.31105 1.21396 0.95523 0.85714 0.96038 0.91995 0.93183 0.95765 0.91729 0.91962 0.90951 0.91398 0.91179 0.90740 0.76415 0.85010 0.85197 0.72984 0.73184 0.96139 0.95770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.11 12.93 55.49 0.72 -27.39 16 2 C -0.03 -0.77 5.09 -17.43 -0.09 -0.86 16 3 Si 1.07 25.77 30.00 -169.99 -5.10 20.67 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.34 -9.68 10.02 -15.06 -0.15 -9.83 16 8 H 0.06 1.86 7.97 -52.49 -0.42 1.45 16 9 N -0.60 -15.44 3.29 -170.07 -0.56 -16.00 16 10 C 0.14 3.29 5.30 -2.53 -0.01 3.27 16 11 C -0.13 -2.15 6.54 -24.58 -0.16 -2.31 16 12 C -0.10 -1.51 2.92 -88.78 -0.26 -1.77 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.12 -1.22 4.73 -26.73 -0.13 -1.35 16 15 C 0.12 1.24 5.56 -4.04 -0.02 1.22 16 16 N -0.72 -5.18 5.56 -60.29 -0.33 -5.52 16 17 C 0.49 4.20 6.71 -10.99 -0.07 4.12 16 18 O -0.52 -7.24 16.15 5.56 0.09 -7.15 16 19 C 0.12 0.49 3.63 -69.10 -0.25 0.24 16 20 H 0.14 -0.10 8.14 -51.93 -0.42 -0.52 16 21 C -0.15 -0.59 5.71 -27.81 -0.16 -0.75 16 22 C 0.52 4.67 7.44 -11.03 -0.08 4.59 16 23 O -0.49 -6.23 17.93 5.60 0.10 -6.13 16 24 N -0.67 -6.13 5.18 -16.02 -0.08 -6.22 16 25 C 0.73 7.06 7.98 -87.75 -0.70 6.36 16 26 O -0.55 -7.32 17.97 5.33 0.10 -7.22 16 27 N -0.71 -4.31 4.91 -60.10 -0.29 -4.60 16 28 C 0.14 2.85 6.24 -3.06 -0.02 2.83 16 29 H 0.27 8.23 6.06 -40.82 -0.25 7.98 16 30 H 0.05 1.26 7.95 -51.93 -0.41 0.85 16 31 H 0.02 0.60 6.81 -51.93 -0.35 0.25 16 32 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.77 7.94 -51.93 -0.41 0.35 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 38 H 0.40 1.37 8.47 -40.82 -0.35 1.03 16 39 H 0.13 0.40 8.07 -51.93 -0.42 -0.02 16 40 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.43 3.73 8.86 -40.82 -0.36 3.37 16 42 H 0.43 1.81 8.90 -40.82 -0.36 1.45 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.49 7.69 -51.93 -0.40 0.09 16 LS Contribution 364.55 15.07 5.49 5.49 Total: -1.00 -40.59 364.55 -8.29 -48.88 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.30 Total: -0.58 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -2.11 Total: 5.77 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.55 Total: -59.73 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.29 Total: -20.51 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.10 Total: 20.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -40.59 -8.29 -48.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691912339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.791 kcal (2) G-P(sol) polarization free energy of solvation -40.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds