Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00447 * 2 1 4 4 H 1.48503 * 109.46918 * 89.99968 * 3 2 1 5 5 H 1.48497 * 109.47281 * 210.00077 * 3 2 1 6 6 H 1.48501 * 109.47032 * 330.00344 * 3 2 1 7 7 C 1.38817 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99680 * 151.96782 * 7 2 1 9 9 N 1.36938 * 119.99907 * 331.96625 * 7 2 1 10 10 C 1.47421 * 125.64902 * 343.18757 * 9 7 2 11 11 C 1.54906 * 104.83194 * 204.09053 * 10 9 7 12 12 C 1.55160 * 101.58477 * 322.99632 * 11 10 9 13 13 H 1.09003 * 110.71385 * 277.13566 * 12 11 10 14 14 C 1.52998 * 110.72176 * 153.86429 * 12 11 10 15 15 C 1.53003 * 109.46852 * 174.99926 * 14 12 11 16 16 N 1.46504 * 109.46831 * 180.02562 * 15 14 12 17 17 C 1.34771 * 119.99564 * 180.02562 * 16 15 14 18 18 O 1.21276 * 120.00669 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99773 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.46355 * 39.97453 * 19 17 16 21 21 C 1.53047 * 109.46474 * 280.00023 * 19 17 16 22 22 C 1.50808 * 109.18159 * 286.68252 * 21 19 17 23 23 O 1.21227 * 120.01887 * 145.74484 * 22 21 19 24 24 N 1.34564 * 119.96452 * 325.76034 * 22 21 19 25 25 C 1.34339 * 120.98855 * 4.44187 * 24 22 21 26 26 O 1.21536 * 119.20892 * 192.03612 * 25 24 22 27 27 N 1.34288 * 121.58324 * 12.01735 * 25 24 22 28 28 C 1.47026 * 125.64403 * 162.88249 * 9 7 2 29 29 H 0.96995 * 120.00466 * 173.96199 * 1 2 3 30 30 H 1.08993 * 110.36738 * 322.93420 * 10 9 7 31 31 H 1.09001 * 110.36463 * 85.25884 * 10 9 7 32 32 H 1.09001 * 111.00099 * 81.06953 * 11 10 9 33 33 H 1.08997 * 111.00839 * 204.88019 * 11 10 9 34 34 H 1.08998 * 109.46772 * 294.99699 * 14 12 11 35 35 H 1.08994 * 109.47069 * 55.00182 * 14 12 11 36 36 H 1.08998 * 109.47247 * 299.99482 * 15 14 12 37 37 H 1.08994 * 109.47288 * 59.99750 * 15 14 12 38 38 H 0.97002 * 120.00029 * 359.97438 * 16 15 14 39 39 H 1.08998 * 109.51362 * 46.59163 * 21 19 17 40 40 H 1.08994 * 109.51953 * 166.71205 * 21 19 17 41 41 H 0.97003 * 119.50503 * 184.41128 * 24 22 21 42 42 H 0.97001 * 119.53838 * 185.71430 * 27 25 24 43 43 H 1.08995 * 109.88283 * 298.39127 * 28 9 7 44 44 H 1.08996 * 109.88163 * 59.55965 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 2.9952 -1.2569 -0.4401 9 7 1.4459 -2.3188 0.5563 10 6 0.2981 -2.3311 1.4814 11 6 0.4418 -3.6542 2.2740 12 6 0.9751 -4.6165 1.1799 13 1 0.1548 -5.0105 0.5799 14 6 1.7840 -5.7538 1.8068 15 6 2.1896 -6.7508 0.7193 16 7 2.9637 -7.8401 1.3197 17 6 3.4303 -8.8407 0.5468 18 8 3.2091 -8.8396 -0.6457 19 6 4.2271 -9.9610 1.1642 20 1 3.7877 -10.2331 2.1239 21 6 5.6718 -9.5025 1.3766 22 6 6.3735 -9.4418 0.0431 23 8 7.2131 -8.5919 -0.1623 24 7 6.0669 -10.3315 -0.9188 25 6 5.0787 -11.2248 -0.7452 26 8 4.9697 -12.1482 -1.5278 27 7 4.2085 -11.1220 0.2724 28 6 1.8806 -3.7043 0.3257 29 1 -0.4850 -0.8353 -0.0884 30 1 0.3461 -1.4771 2.1568 31 1 -0.6385 -2.3228 0.9238 32 1 1.1621 -3.5474 3.0852 33 1 -0.5235 -3.9894 2.6532 34 1 2.6784 -5.3465 2.2782 35 1 1.1770 -6.2611 2.5566 36 1 1.2952 -7.1581 0.2480 37 1 2.7966 -6.2435 -0.0305 38 1 3.1410 -7.8408 2.2734 39 1 5.6762 -8.5139 1.8358 40 1 6.1861 -10.2090 2.0279 41 1 6.5667 -10.3275 -1.7502 42 1 3.5587 -11.8271 0.4190 43 1 1.7735 -3.9556 -0.7294 44 1 2.9194 -3.8230 0.6337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691912339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = -115.330026 kcal Electronic energy + Delta-G solvation = -27393.086017 eV Core-core repulsion = 23344.431428 eV Total energy + Delta-G solvation = -4048.654590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.91781 -40.70675 -40.00985 -39.62124 -37.11275 -36.52483 -35.40201 -34.98115 -32.75781 -31.81460 -30.73667 -28.49692 -26.94828 -26.11838 -24.61439 -23.73013 -22.42267 -21.95484 -21.21204 -20.64032 -19.58677 -19.34270 -19.08777 -18.19889 -17.53695 -17.25158 -16.97618 -16.76641 -16.37000 -16.25941 -15.73824 -15.63701 -15.60380 -15.23626 -15.10414 -14.89309 -14.52999 -14.10587 -13.60493 -13.50981 -13.37981 -13.33357 -12.98537 -12.63620 -12.51630 -12.29947 -12.00644 -11.93677 -11.83523 -11.64452 -11.58213 -11.51259 -11.47871 -11.42687 -11.41135 -10.55021 -10.33212 -10.16718 -9.04320 -8.36478 -5.37678 0.58175 1.30615 1.50530 1.54736 1.62768 1.79123 1.80750 2.14568 2.28568 2.62080 3.14686 3.24168 3.36399 3.52502 3.61403 3.65333 3.86675 4.03939 4.07296 4.18226 4.22657 4.30457 4.48306 4.49000 4.54987 4.64894 4.78849 4.82155 4.91172 5.00556 5.04414 5.14934 5.16661 5.19949 5.30214 5.37019 5.48707 5.64393 5.73292 6.13216 6.29044 6.38630 6.48897 6.89488 7.05493 7.17787 7.68350 8.26946 8.94992 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.002340 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.395493 B =11964.411714 C =12661.864769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.080 4.080 3 Si 1.119 2.881 4 H -0.279 1.279 5 H -0.275 1.275 6 H -0.292 1.292 7 C -0.350 4.350 8 H 0.054 0.946 9 N -0.629 5.629 10 C 0.140 3.860 11 C -0.109 4.109 12 C -0.085 4.085 13 H 0.075 0.925 14 C -0.098 4.098 15 C 0.122 3.878 16 N -0.701 5.701 17 C 0.477 3.523 18 O -0.580 6.580 19 C 0.133 3.867 20 H 0.206 0.794 21 C -0.143 4.143 22 C 0.514 3.486 23 O -0.540 6.540 24 N -0.676 5.676 25 C 0.723 3.277 26 O -0.598 6.598 27 N -0.692 5.692 28 C 0.132 3.868 29 H 0.255 0.745 30 H 0.018 0.982 31 H -0.001 1.001 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.426 0.574 39 H 0.149 0.851 40 H 0.176 0.824 41 H 0.423 0.577 42 H 0.438 0.562 43 H -0.003 1.003 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 -26.188 14.177 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.276 4.276 3 Si 0.943 3.057 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.219 1.219 7 C -0.478 4.478 8 H 0.072 0.928 9 N -0.356 5.356 10 C 0.015 3.985 11 C -0.147 4.147 12 C -0.104 4.104 13 H 0.094 0.906 14 C -0.135 4.135 15 C -0.002 4.002 16 N -0.354 5.354 17 C 0.262 3.738 18 O -0.459 6.459 19 C 0.024 3.976 20 H 0.223 0.777 21 C -0.182 4.182 22 C 0.304 3.696 23 O -0.414 6.414 24 N -0.343 5.343 25 C 0.423 3.577 26 O -0.475 6.475 27 N -0.351 5.351 28 C 0.008 3.992 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.017 0.983 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.265 0.735 39 H 0.167 0.833 40 H 0.194 0.806 41 H 0.264 0.736 42 H 0.281 0.719 43 H 0.015 0.985 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.055 -24.383 13.004 28.784 hybrid contribution -0.028 -1.264 -1.242 1.772 sum 8.027 -25.647 11.762 29.335 Atomic orbital electron populations 1.70866 1.07577 1.29435 1.50935 1.27205 0.96559 1.04559 0.99227 0.82803 0.73888 0.71763 0.77241 1.20591 1.19986 1.21863 1.20050 0.99282 0.89815 1.38689 0.92800 1.44939 1.37050 1.01967 1.51692 1.21528 0.89179 0.96953 0.90875 1.22753 1.02266 0.92916 0.96808 1.22033 0.97551 0.94543 0.96313 0.90632 1.21629 1.00863 0.93780 0.97277 1.21247 0.95127 0.87550 0.96316 1.45779 1.54170 1.22600 1.12876 1.21911 0.80300 0.84464 0.87161 1.90801 1.59310 1.78093 1.17680 1.21448 0.95447 0.83748 0.96969 0.77743 1.22486 0.92673 1.10030 0.93044 1.21811 0.81793 0.78384 0.87625 1.90818 1.34171 1.34749 1.81681 1.44296 1.34710 1.33732 1.21604 1.15724 0.79487 0.80980 0.81516 1.91017 1.75792 1.34963 1.45749 1.44702 1.36232 1.24114 1.30059 1.21603 0.97013 0.84608 0.96008 0.93489 0.96371 0.98295 0.90030 0.88523 0.90094 0.87177 0.92113 0.94447 0.73535 0.83287 0.80645 0.73647 0.71950 0.98498 0.95304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.81 12.93 21.65 0.28 -59.53 16 2 C -0.08 -4.74 5.09 84.86 0.43 -4.31 16 3 Si 1.12 52.71 30.00 68.60 2.06 54.77 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.35 -20.74 10.02 84.03 0.84 -19.90 16 8 H 0.05 3.22 7.97 -2.91 -0.02 3.20 16 9 N -0.63 -33.02 3.29 -691.99 -2.28 -35.30 16 10 C 0.14 6.54 5.30 86.85 0.46 7.00 16 11 C -0.11 -3.34 6.54 31.99 0.21 -3.13 16 12 C -0.08 -2.43 2.92 -9.60 -0.03 -2.46 16 13 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.10 -1.66 4.73 30.59 0.14 -1.51 16 15 C 0.12 2.34 5.56 86.38 0.48 2.82 16 16 N -0.70 -7.33 5.56 -463.07 -2.57 -9.90 16 17 C 0.48 6.88 6.71 87.66 0.59 7.47 16 18 O -0.58 -16.01 16.15 -3.02 -0.05 -16.06 16 19 C 0.13 0.45 3.63 44.28 0.16 0.61 16 20 H 0.21 -1.95 8.14 -2.39 -0.02 -1.97 16 21 C -0.14 -0.50 5.71 29.90 0.17 -0.33 16 22 C 0.51 8.62 7.44 87.72 0.65 9.27 16 23 O -0.54 -13.77 17.93 -2.87 -0.05 -13.83 16 24 N -0.68 -12.46 5.18 -441.65 -2.29 -14.74 16 25 C 0.72 13.63 7.98 179.34 1.43 15.06 16 26 O -0.60 -16.12 17.97 -3.83 -0.07 -16.19 16 27 N -0.69 -6.50 4.91 -462.63 -2.27 -8.77 16 28 C 0.13 5.50 6.24 86.73 0.54 6.04 16 29 H 0.25 16.36 6.06 -92.71 -0.56 15.80 16 30 H 0.02 0.93 7.95 -2.39 -0.02 0.91 16 31 H 0.00 -0.04 6.81 -2.39 -0.02 -0.05 16 32 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 1.32 7.94 -2.39 -0.02 1.31 16 35 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.00 7.68 -2.39 -0.02 0.99 16 38 H 0.43 0.31 8.47 -92.71 -0.79 -0.47 16 39 H 0.15 0.14 8.07 -2.39 -0.02 0.12 16 40 H 0.18 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.42 8.05 8.86 -92.71 -0.82 7.22 16 42 H 0.44 2.36 8.90 -92.71 -0.83 1.54 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.03 1.17 7.69 -2.39 -0.02 1.15 16 Total: -1.00 -98.91 364.55 -2.31 -101.22 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -1.16 Total: 1.68 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 6.09 Total: 16.64 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -9.13 Total: -128.23 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.17 Total: -46.07 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.06 Total: 54.77 kcal Total: -98.91 -2.31 -101.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691912339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.107 kcal (2) G-P(sol) polarization free energy of solvation -98.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds