Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00419 * 2 1 4 4 H 1.48502 * 109.47154 * 269.99855 * 3 2 1 5 5 H 1.48499 * 109.47271 * 29.99551 * 3 2 1 6 6 H 1.48500 * 109.47347 * 149.99726 * 3 2 1 7 7 C 1.38814 * 119.99257 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00639 * 0.02562 * 7 2 1 9 9 N 1.36944 * 119.99423 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99769 * 175.17610 * 9 7 2 11 11 C 1.52997 * 110.81921 * 301.13384 * 10 9 7 12 12 N 1.46508 * 109.47155 * 301.81365 * 11 10 9 13 13 C 1.34776 * 120.00238 * 184.64452 * 12 11 10 14 14 O 1.21286 * 119.99585 * 359.97438 * 13 12 11 15 15 C 1.50692 * 119.99934 * 179.97438 * 13 12 11 16 16 N 1.46500 * 109.47075 * 180.02562 * 15 13 12 17 17 C 1.34768 * 124.17732 * 269.72475 * 16 15 13 18 18 O 1.21241 * 127.15696 * 0.02562 * 17 16 15 19 19 C 1.51583 * 105.68732 * 179.97438 * 17 16 15 20 20 N 1.47315 * 103.59056 * 0.32314 * 19 17 16 21 21 C 1.33790 * 124.18178 * 90.02181 * 16 15 13 22 22 O 1.21539 * 123.76835 * 359.97269 * 21 16 15 23 23 C 1.54890 * 110.75810 * 177.79543 * 10 9 7 24 24 C 1.54262 * 104.19610 * 279.63233 * 23 10 9 25 25 C 1.53879 * 106.59920 * 336.38408 * 24 23 10 26 26 C 1.54262 * 106.59625 * 0.02562 * 25 24 23 27 27 H 0.97001 * 119.99626 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00229 * 355.17803 * 9 7 2 29 29 H 1.08998 * 109.47130 * 61.80848 * 11 10 9 30 30 H 1.09002 * 109.47324 * 181.80928 * 11 10 9 31 31 H 0.96998 * 119.99527 * 4.63819 * 12 11 10 32 32 H 1.09000 * 109.47570 * 299.99943 * 15 13 12 33 33 H 1.09000 * 109.47372 * 59.99984 * 15 13 12 34 34 H 1.08995 * 110.76861 * 241.71418 * 19 17 16 35 35 H 1.09005 * 110.56224 * 118.83333 * 19 17 16 36 36 H 0.96994 * 126.68943 * 179.76861 * 20 19 17 37 37 H 1.08997 * 110.48617 * 160.94832 * 23 10 9 38 38 H 1.09000 * 110.48475 * 38.30764 * 23 10 9 39 39 H 1.09000 * 110.03872 * 95.67309 * 24 23 10 40 40 H 1.09002 * 110.02908 * 217.10544 * 24 23 10 41 41 H 1.09000 * 110.03339 * 119.28470 * 25 24 23 42 42 H 1.08994 * 110.03692 * 240.71757 * 25 24 23 43 43 H 1.09003 * 110.48743 * 142.28661 * 26 25 24 44 44 H 1.08997 * 110.48824 * 264.92667 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 1.4701 -2.1376 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4666 0.1083 11 6 3.7430 -3.2010 1.3988 12 7 4.0389 -2.3443 2.5499 13 6 3.8815 -2.8191 3.8014 14 8 3.4945 -3.9555 3.9746 15 6 4.1865 -1.9382 4.9854 16 7 3.9384 -2.6810 6.2235 17 6 2.7563 -2.7009 6.8704 18 8 1.7361 -2.1296 6.5496 19 6 2.9670 -3.5872 8.0819 20 7 4.3778 -3.9962 7.9704 21 6 4.8588 -3.4187 6.8548 22 8 6.0023 -3.5507 6.4648 23 6 5.6399 -2.2240 0.0325 24 6 5.9243 -2.0715 -1.4760 25 6 4.7839 -2.7947 -2.2137 26 6 3.8459 -3.3610 -1.1277 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3653 -0.0695 29 1 2.6799 -3.4414 1.3887 30 1 4.3229 -4.1210 1.4719 31 1 4.3481 -1.4355 2.4113 32 1 5.2316 -1.6306 4.9499 33 1 3.5470 -1.0560 4.9561 34 1 2.3113 -4.4570 8.0433 35 1 2.8022 -3.0248 9.0010 36 1 4.8648 -4.5703 8.5820 37 1 6.1823 -3.0778 0.4386 38 1 5.9082 -1.3118 0.5654 39 1 5.9356 -1.0163 -1.7491 40 1 6.8806 -2.5320 -1.7241 41 1 4.2416 -2.0906 -2.8447 42 1 5.1866 -3.6062 -2.8197 43 1 2.8053 -3.2788 -1.4416 44 1 4.0984 -4.3984 -0.9087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698805823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = -62.088037 kcal Electronic energy + Delta-G solvation = -28521.089602 eV Core-core repulsion = 24474.743758 eV Total energy + Delta-G solvation = -4046.345844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46341 -39.46444 -38.66043 -38.22508 -36.21449 -34.77027 -34.16124 -33.31105 -30.97755 -29.46994 -28.35152 -28.12633 -27.43774 -24.31491 -23.14356 -23.01892 -21.38711 -20.24511 -19.70192 -18.78611 -18.17697 -17.68830 -17.61734 -16.94978 -16.38406 -16.07498 -15.54308 -15.42004 -14.94171 -14.77188 -14.55247 -14.30264 -14.28712 -14.12626 -13.94377 -13.46999 -13.04710 -12.99467 -12.63858 -12.45672 -11.90352 -11.69132 -11.27646 -11.14370 -10.96540 -10.83167 -10.73761 -10.58325 -10.47765 -10.39768 -10.32550 -10.05060 -9.93832 -9.76692 -9.56923 -9.39236 -8.94513 -8.55996 -7.34514 -5.79732 -3.17203 1.53106 1.93808 2.81914 2.86199 2.96163 3.29648 3.34160 3.41648 3.60013 3.82812 4.53923 4.57818 4.74355 4.89375 4.94408 5.00606 5.03578 5.08674 5.13408 5.30382 5.33812 5.45093 5.55160 5.71828 5.81682 5.92377 6.03709 6.13154 6.16532 6.26230 6.34630 6.46112 6.51428 6.56836 6.65619 6.73377 6.85710 6.87539 6.99110 7.24122 7.83683 7.94939 7.96410 8.38624 8.50524 9.15660 9.87276 10.06112 11.38258 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.004014 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.425313 B = 6974.097499 C = 8258.033044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.733 5.733 10 C 0.194 3.806 11 C 0.124 3.876 12 N -0.697 5.697 13 C 0.499 3.501 14 O -0.544 6.544 15 C 0.099 3.901 16 N -0.560 5.560 17 C 0.522 3.478 18 O -0.458 6.458 19 C 0.067 3.933 20 N -0.729 5.729 21 C 0.709 3.291 22 O -0.543 6.543 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.129 4.129 27 H 0.259 0.741 28 H 0.362 0.638 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.402 0.598 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.440 0.560 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 -5.589 12.938 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.375 5.375 10 C 0.102 3.898 11 C -0.002 4.002 12 N -0.347 5.347 13 C 0.283 3.717 14 O -0.422 6.422 15 C -0.027 4.027 16 N -0.306 5.306 17 C 0.309 3.691 18 O -0.326 6.326 19 C -0.061 4.061 20 N -0.394 5.394 21 C 0.409 3.591 22 O -0.417 6.417 23 C -0.164 4.164 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.169 4.169 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.285 0.715 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.427 -6.135 12.571 18.062 hybrid contribution 0.708 1.480 0.073 1.643 sum 12.135 -4.655 12.644 18.133 Atomic orbital electron populations 1.69697 1.05123 1.25761 1.57079 1.24650 0.95100 0.96978 1.01947 0.86633 0.79099 0.85425 0.77715 1.21244 1.21914 1.20387 1.18925 0.80312 0.94596 1.43137 0.89119 1.42662 1.03977 1.01745 1.89155 1.20688 0.89862 0.87694 0.91594 1.21779 1.01527 0.92136 0.84771 1.45617 1.66744 1.17424 1.04869 1.20505 0.78429 0.88145 0.84646 1.90684 1.46591 1.19185 1.85744 1.21491 1.05752 0.94679 0.80748 1.45785 1.13341 1.46932 1.24498 1.20889 0.82600 0.80858 0.84757 1.90887 1.28073 1.43918 1.69735 1.22442 0.84497 1.00471 0.98706 1.45328 1.12417 1.54194 1.27477 1.15745 0.84255 0.78456 0.80603 1.91008 1.16541 1.64772 1.69339 1.22613 0.96039 1.01321 0.96456 1.22052 0.97986 1.00396 0.95175 1.21961 0.96093 0.99074 0.97909 1.22719 1.00895 0.97544 0.95780 0.93057 0.80503 0.91010 0.92332 0.76376 0.85816 0.85555 0.85785 0.85916 0.71541 0.91251 0.91963 0.92262 0.92692 0.91776 0.93008 0.90266 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.97 55.49 0.78 -27.61 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 20.92 27.69 -169.99 -4.71 16.21 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -5.98 6.59 56.52 0.37 -5.61 16 7 C -0.24 -6.21 9.11 -15.06 -0.14 -6.35 16 8 H 0.09 2.60 7.40 -52.49 -0.39 2.21 16 9 N -0.73 -15.27 4.56 -45.40 -0.21 -15.47 16 10 C 0.19 3.34 0.48 -129.84 -0.06 3.28 16 11 C 0.12 2.23 4.44 -4.04 -0.02 2.21 16 12 N -0.70 -11.68 5.26 -60.29 -0.32 -12.00 16 13 C 0.50 8.63 7.90 -10.99 -0.09 8.54 16 14 O -0.54 -11.28 16.43 5.55 0.09 -11.19 16 15 C 0.10 1.32 6.18 -5.20 -0.03 1.29 16 16 N -0.56 -7.40 2.09 -122.03 -0.26 -7.66 16 17 C 0.52 6.50 8.32 -10.55 -0.09 6.41 16 18 O -0.46 -7.37 17.76 5.59 0.10 -7.27 16 19 C 0.07 0.46 7.97 -4.31 -0.03 0.42 16 20 N -0.73 -5.80 6.58 -65.74 -0.43 -6.23 16 21 C 0.71 9.06 8.62 -88.03 -0.76 8.30 16 22 O -0.54 -8.68 17.48 5.33 0.09 -8.59 16 23 C -0.13 -1.79 5.50 -25.07 -0.14 -1.93 16 24 C -0.12 -1.61 6.78 -25.61 -0.17 -1.79 16 25 C -0.11 -1.68 6.78 -25.61 -0.17 -1.85 16 26 C -0.13 -2.16 5.86 -25.08 -0.15 -2.31 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.36 7.46 5.62 -40.82 -0.23 7.23 16 29 H 0.07 1.53 7.50 -51.93 -0.39 1.14 16 30 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 31 H 0.40 6.16 8.11 -40.82 -0.33 5.83 16 32 H 0.12 1.36 7.86 -51.93 -0.41 0.95 16 33 H 0.13 1.55 8.00 -51.93 -0.42 1.13 16 34 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.44 2.21 8.96 -40.82 -0.37 1.85 16 37 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 38 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.54 7.27 -51.93 -0.38 1.16 16 44 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -36.77 366.24 -7.57 -44.34 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.28 Total: 13.56 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: -1.95 Total: 16.39 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -0.44 Total: -68.97 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: 0.28 Total: -27.05 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.71 Total: 16.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.77 -7.57 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698805823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.747 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds