Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30018 * 127.33494 * 2 1 4 4 O 1.20664 * 112.30170 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15453 * 0.02562 * 4 3 2 6 6 C 1.37364 * 106.34327 * 359.73922 * 5 4 3 7 7 C 1.47394 * 128.56449 * 180.26100 * 6 5 4 8 8 O 1.21612 * 120.00110 * 140.97166 * 7 6 5 9 9 N 1.34773 * 119.99975 * 320.97124 * 7 6 5 10 10 C 1.46499 * 120.00248 * 5.21710 * 9 7 6 11 11 C 1.46499 * 120.00323 * 185.22110 * 9 7 6 12 12 H 1.09000 * 109.47156 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.47472 * 119.99553 * 11 9 7 14 14 C 1.52998 * 109.47335 * 240.00202 * 11 9 7 15 15 N 1.46901 * 109.47361 * 54.99628 * 14 11 9 16 16 C 1.46897 * 111.00226 * 180.02562 * 15 14 11 17 17 C 1.50695 * 109.47126 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00067 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00184 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00077 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00138 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99600 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99503 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00255 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47332 * 90.00017 * 24 22 20 26 26 H 1.48500 * 109.47032 * 209.99903 * 24 22 20 27 27 H 1.48504 * 109.47214 * 329.99659 * 24 22 20 28 28 H 1.09005 * 109.46834 * 90.01845 * 1 2 3 29 29 H 1.08998 * 109.47140 * 210.01904 * 1 2 3 30 30 H 1.09001 * 109.46646 * 330.02371 * 1 2 3 31 31 H 1.08002 * 126.82496 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46980 * 84.50994 * 10 9 7 33 33 H 1.08999 * 109.47863 * 204.51034 * 10 9 7 34 34 H 1.09003 * 109.47326 * 324.51600 * 10 9 7 35 35 H 1.08993 * 109.47340 * 300.00513 * 13 11 9 36 36 H 1.09000 * 109.46924 * 60.00485 * 13 11 9 37 37 H 1.09005 * 109.47199 * 179.97438 * 13 11 9 38 38 H 1.08999 * 109.47522 * 174.99655 * 14 11 9 39 39 H 1.09002 * 109.47301 * 294.99688 * 14 11 9 40 40 H 1.00903 * 110.99868 * 56.04350 * 15 14 11 41 41 H 1.08999 * 109.46941 * 300.00155 * 16 15 14 42 42 H 1.09004 * 109.47261 * 59.99630 * 16 15 14 43 43 H 0.97001 * 119.99696 * 359.97438 * 19 17 16 44 44 H 0.97001 * 119.99863 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4609 0.7208 0.0005 5 6 3.6495 -0.6007 0.0004 6 6 2.3992 -1.1696 0.0057 7 6 2.0401 -2.5991 0.0131 8 8 1.0999 -2.9865 0.6801 9 7 2.7537 -3.4769 -0.7194 10 6 3.9539 -3.0316 -1.4317 11 6 2.3293 -4.8766 -0.8034 12 1 1.4240 -5.0178 -0.2129 13 6 2.0480 -5.2375 -2.2633 14 6 3.4383 -5.7794 -0.2594 15 7 3.7916 -5.3551 1.1020 16 6 4.8563 -6.2010 1.6575 17 6 5.1914 -5.7362 3.0512 18 8 4.6016 -4.7927 3.5341 19 7 6.1472 -6.3682 3.7608 20 6 6.4517 -5.9457 5.0290 21 1 5.9260 -5.1062 5.4593 22 6 7.4368 -6.5977 5.7607 23 7 7.7290 -6.1923 6.9761 24 14 8.3466 -8.0493 5.0162 25 1 9.5516 -7.5626 4.2977 26 1 8.7573 -8.9826 6.0959 27 1 7.4541 -8.7569 4.0633 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 4.5968 -1.1194 0.0004 32 1 4.8072 -3.0517 -0.7538 33 1 4.1439 -3.6960 -2.2746 34 1 3.8038 -2.0155 -1.7966 35 1 1.2579 -4.5944 -2.6508 36 1 2.9535 -5.0965 -2.8534 37 1 1.7326 -6.2791 -2.3258 38 1 3.0893 -6.8118 -0.2390 39 1 4.3155 -5.7050 -0.9022 40 1 2.9804 -5.3534 1.7021 41 1 4.5174 -7.2364 1.6909 42 1 5.7432 -6.1292 1.0278 43 1 6.6192 -7.1225 3.3745 44 1 8.4169 -6.6472 7.4868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698844982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = 5.862751 kcal Electronic energy + Delta-G solvation = -27767.598742 eV Core-core repulsion = 23724.199466 eV Total energy + Delta-G solvation = -4043.399277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.00256 -40.05263 -38.46821 -36.92128 -34.88981 -34.58890 -33.87949 -32.72277 -31.66389 -31.09858 -28.85548 -27.80491 -27.21308 -25.27331 -24.68188 -23.09570 -21.50976 -21.37537 -19.72356 -19.30248 -18.31796 -17.94158 -17.69812 -17.01950 -16.61083 -15.92999 -15.55035 -15.35763 -14.87314 -14.69268 -14.32746 -14.11429 -13.77561 -13.51584 -13.44640 -13.30380 -13.26414 -12.92961 -12.83913 -12.68720 -12.49301 -12.38969 -12.21014 -12.10354 -11.71042 -11.64922 -11.41357 -11.17276 -11.02221 -10.60940 -10.14129 -10.01935 -9.98243 -9.72647 -9.57865 -8.79679 -8.56030 -8.20160 -8.14920 -6.31422 -3.82936 1.07271 1.69196 2.62004 2.89991 3.00834 3.05113 3.10082 3.13639 3.73631 3.91559 4.02615 4.09531 4.19236 4.50691 4.75555 4.79973 4.84656 4.85763 4.92298 5.08574 5.20294 5.20859 5.27929 5.32443 5.32892 5.38083 5.44012 5.44822 5.53976 5.58769 5.59779 5.76554 5.78551 5.87273 5.91669 5.96211 6.39264 7.06220 7.22699 7.54228 7.57996 8.05731 8.10954 8.14408 8.59504 8.94937 9.42006 9.82741 10.81814 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.003033 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.947445 B = 9229.383571 C =10351.096995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.062 3.938 3 N -0.361 5.361 4 O 0.094 5.906 5 C -0.004 4.004 6 C -0.245 4.245 7 C 0.605 3.395 8 O -0.527 6.527 9 N -0.586 5.586 10 C 0.071 3.929 11 C 0.140 3.860 12 H 0.102 0.898 13 C -0.159 4.159 14 C 0.048 3.952 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.449 3.551 18 O -0.561 6.561 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.881 3.119 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.354 0.646 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 3.394 -23.538 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 N -0.069 5.069 4 O 0.035 5.965 5 C -0.086 4.086 6 C -0.252 4.252 7 C 0.392 3.608 8 O -0.403 6.403 9 N -0.318 5.318 10 C -0.072 4.072 11 C 0.036 3.964 12 H 0.121 0.879 13 C -0.218 4.218 14 C -0.083 4.083 15 N -0.297 5.297 16 C -0.084 4.084 17 C 0.235 3.765 18 O -0.443 6.443 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.244 0.756 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.174 0.826 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.202 0.798 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.828 5.608 -22.852 25.132 hybrid contribution 0.691 -2.987 -0.165 3.070 sum -8.136 2.621 -23.018 24.554 Atomic orbital electron populations 1.20260 0.85175 1.04783 1.03430 1.24802 0.98762 0.86426 1.00052 1.73650 0.89349 1.23655 1.20205 1.84563 1.21423 1.23258 1.67278 1.26638 1.00553 0.83528 0.97853 1.22246 0.92978 0.95573 1.14411 1.16738 0.82149 0.83102 0.78788 1.90789 1.29943 1.78871 1.40728 1.47317 1.26937 1.08640 1.48929 1.21958 0.87643 1.00453 0.97132 1.21123 0.98540 0.79833 0.96867 0.87949 1.22108 1.02178 1.02169 0.95327 1.22368 0.98069 0.96103 0.91752 1.60010 1.13527 1.53829 1.02316 1.21696 0.96252 0.94652 0.95779 1.19720 0.83588 0.86218 0.87022 1.90592 1.53177 1.29315 1.71207 1.42209 1.34892 1.30354 1.15650 1.19433 1.19149 1.16199 0.88571 0.86327 1.25041 0.97337 0.98184 0.95628 1.69625 1.31843 1.41008 1.09674 0.86661 0.80558 0.82689 0.79385 1.19626 1.20212 1.19574 0.90122 0.88712 0.90176 0.75561 0.91505 0.90644 0.91443 0.91961 0.92036 0.91133 0.94292 0.90780 0.82630 0.93886 0.89660 0.79756 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.49 36.01 0.38 -0.42 16 2 C 0.06 0.78 7.59 -79.77 -0.61 0.18 16 3 N -0.36 -4.72 12.01 34.78 0.42 -4.31 16 4 O 0.09 1.11 11.06 18.66 0.21 1.31 16 5 C 0.00 -0.04 10.14 30.41 0.31 0.27 16 6 C -0.24 -3.08 5.64 -102.89 -0.58 -3.66 16 7 C 0.60 8.33 7.64 -12.54 -0.10 8.23 16 8 O -0.53 -9.01 15.79 5.27 0.08 -8.93 16 9 N -0.59 -6.25 2.49 -175.22 -0.44 -6.68 16 10 C 0.07 0.53 8.25 59.85 0.49 1.03 16 11 C 0.14 1.38 2.87 -67.93 -0.20 1.18 16 12 H 0.10 1.22 6.91 -51.93 -0.36 0.86 16 13 C -0.16 -1.07 9.18 37.16 0.34 -0.73 16 14 C 0.05 0.49 4.98 -3.82 -0.02 0.47 16 15 N -0.66 -9.85 5.85 -115.06 -0.67 -10.52 16 16 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 17 C 0.45 10.10 7.82 -10.99 -0.09 10.01 16 18 O -0.56 -15.21 15.78 5.55 0.09 -15.13 16 19 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 20 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 24 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.05 7.47 -51.93 -0.39 0.67 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.23 1.64 6.66 -52.49 -0.35 1.29 16 32 H 0.07 0.53 7.51 -51.93 -0.39 0.14 16 33 H 0.07 0.42 6.44 -51.93 -0.33 0.08 16 34 H 0.07 0.43 5.97 -51.93 -0.31 0.12 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.34 6.67 -51.93 -0.35 0.00 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 40 H 0.35 6.06 8.43 -39.29 -0.33 5.73 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -36.27 369.27 -5.05 -41.32 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.97 Total: 12.41 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.34 Total: 9.53 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.03 Total: -60.62 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.38 Total: -22.74 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.27 -5.05 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698844982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.185 kcal (2) G-P(sol) polarization free energy of solvation -36.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds