Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30018 * 127.33494 * 2 1 4 4 O 1.20664 * 112.30170 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15453 * 0.02562 * 4 3 2 6 6 C 1.37364 * 106.34327 * 359.73922 * 5 4 3 7 7 C 1.47394 * 128.56449 * 180.26100 * 6 5 4 8 8 O 1.21612 * 120.00110 * 140.97166 * 7 6 5 9 9 N 1.34773 * 119.99975 * 320.97124 * 7 6 5 10 10 C 1.46499 * 120.00248 * 5.21710 * 9 7 6 11 11 C 1.46499 * 120.00323 * 185.22110 * 9 7 6 12 12 H 1.09000 * 109.47156 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.47472 * 119.99553 * 11 9 7 14 14 C 1.52998 * 109.47335 * 240.00202 * 11 9 7 15 15 N 1.46901 * 109.47361 * 54.99628 * 14 11 9 16 16 C 1.46897 * 111.00226 * 180.02562 * 15 14 11 17 17 C 1.50695 * 109.47126 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00067 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00184 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00077 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00138 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99600 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99503 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00255 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47332 * 90.00017 * 24 22 20 26 26 H 1.48500 * 109.47032 * 209.99903 * 24 22 20 27 27 H 1.48504 * 109.47214 * 329.99659 * 24 22 20 28 28 H 1.09005 * 109.46834 * 90.01845 * 1 2 3 29 29 H 1.08998 * 109.47140 * 210.01904 * 1 2 3 30 30 H 1.09001 * 109.46646 * 330.02371 * 1 2 3 31 31 H 1.08002 * 126.82496 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46980 * 84.50994 * 10 9 7 33 33 H 1.08999 * 109.47863 * 204.51034 * 10 9 7 34 34 H 1.09003 * 109.47326 * 324.51600 * 10 9 7 35 35 H 1.08993 * 109.47340 * 300.00513 * 13 11 9 36 36 H 1.09000 * 109.46924 * 60.00485 * 13 11 9 37 37 H 1.09005 * 109.47199 * 179.97438 * 13 11 9 38 38 H 1.08999 * 109.47522 * 174.99655 * 14 11 9 39 39 H 1.09002 * 109.47301 * 294.99688 * 14 11 9 40 40 H 1.00903 * 110.99868 * 56.04350 * 15 14 11 41 41 H 1.08999 * 109.46941 * 300.00155 * 16 15 14 42 42 H 1.09004 * 109.47261 * 59.99630 * 16 15 14 43 43 H 0.97001 * 119.99696 * 359.97438 * 19 17 16 44 44 H 0.97001 * 119.99863 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4609 0.7208 0.0005 5 6 3.6495 -0.6007 0.0004 6 6 2.3992 -1.1696 0.0057 7 6 2.0401 -2.5991 0.0131 8 8 1.0999 -2.9865 0.6801 9 7 2.7537 -3.4769 -0.7194 10 6 3.9539 -3.0316 -1.4317 11 6 2.3293 -4.8766 -0.8034 12 1 1.4240 -5.0178 -0.2129 13 6 2.0480 -5.2375 -2.2633 14 6 3.4383 -5.7794 -0.2594 15 7 3.7916 -5.3551 1.1020 16 6 4.8563 -6.2010 1.6575 17 6 5.1914 -5.7362 3.0512 18 8 4.6016 -4.7927 3.5341 19 7 6.1472 -6.3682 3.7608 20 6 6.4517 -5.9457 5.0290 21 1 5.9260 -5.1062 5.4593 22 6 7.4368 -6.5977 5.7607 23 7 7.7290 -6.1923 6.9761 24 14 8.3466 -8.0493 5.0162 25 1 9.5516 -7.5626 4.2977 26 1 8.7573 -8.9826 6.0959 27 1 7.4541 -8.7569 4.0633 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 4.5968 -1.1194 0.0004 32 1 4.8072 -3.0517 -0.7538 33 1 4.1439 -3.6960 -2.2746 34 1 3.8038 -2.0155 -1.7966 35 1 1.2579 -4.5944 -2.6508 36 1 2.9535 -5.0965 -2.8534 37 1 1.7326 -6.2791 -2.3258 38 1 3.0893 -6.8118 -0.2390 39 1 4.3155 -5.7050 -0.9022 40 1 2.9804 -5.3534 1.7021 41 1 4.5174 -7.2364 1.6909 42 1 5.7432 -6.1292 1.0278 43 1 6.6192 -7.1225 3.3745 44 1 8.4169 -6.6472 7.4868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698844982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = -23.558636 kcal Electronic energy + Delta-G solvation = -27768.874549 eV Core-core repulsion = 23724.199466 eV Total energy + Delta-G solvation = -4044.675084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.94463 -40.98927 -40.24341 -37.94197 -36.20971 -35.68634 -35.47364 -33.78809 -33.60260 -31.94877 -29.72114 -29.07289 -27.93495 -26.63383 -25.81175 -24.37187 -22.37446 -22.26562 -21.29670 -20.58140 -20.11411 -18.86445 -18.61776 -17.98384 -17.83915 -17.29484 -16.86555 -16.49913 -16.36065 -15.65768 -15.59389 -15.29708 -14.98847 -14.82861 -14.40395 -14.32986 -14.31892 -14.23994 -14.01204 -13.76619 -13.58054 -13.29020 -13.14860 -13.01724 -12.87482 -12.74586 -12.52451 -12.41001 -12.33054 -11.97751 -11.73940 -11.50840 -11.16608 -10.94636 -10.66568 -10.44341 -10.24702 -9.60080 -9.27821 -8.41204 -6.02557 0.17899 0.73298 1.30171 1.36409 1.45332 1.77374 1.92174 1.97405 2.23574 2.27749 2.74401 3.03962 3.15141 3.31398 3.41447 3.68593 3.92373 3.98070 4.14721 4.24509 4.27840 4.35984 4.39144 4.48341 4.55779 4.56215 4.59102 4.69102 4.72064 4.73955 4.76725 4.84168 4.98274 5.08791 5.13068 5.32572 5.52744 5.62698 5.91048 6.07825 6.30830 6.36203 6.60269 6.88866 7.11952 7.18037 7.40464 7.98616 8.76823 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.003033 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.947445 B = 9229.383571 C =10351.096995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.050 3.950 3 N -0.379 5.379 4 O 0.092 5.908 5 C 0.017 3.983 6 C -0.271 4.271 7 C 0.596 3.404 8 O -0.576 6.576 9 N -0.579 5.579 10 C 0.063 3.937 11 C 0.136 3.864 12 H 0.072 0.928 13 C -0.149 4.149 14 C 0.052 3.948 15 N -0.681 5.681 16 C 0.065 3.935 17 C 0.446 3.554 18 O -0.617 6.617 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.050 0.950 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.230 1.230 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.335 0.665 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.390 0.610 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 0.721 -27.516 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 N -0.088 5.088 4 O 0.034 5.966 5 C -0.064 4.064 6 C -0.278 4.278 7 C 0.384 3.616 8 O -0.457 6.457 9 N -0.310 5.310 10 C -0.078 4.078 11 C 0.033 3.967 12 H 0.091 0.909 13 C -0.207 4.207 14 C -0.077 4.077 15 N -0.313 5.313 16 C -0.067 4.067 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.069 0.931 22 C -0.215 4.215 23 N -0.577 5.577 24 Si 0.788 3.212 25 H -0.179 1.179 26 H -0.203 1.203 27 H -0.153 1.153 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.274 0.726 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.226 0.774 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.952 2.921 -26.905 27.942 hybrid contribution 0.064 -2.055 1.100 2.332 sum -6.888 0.866 -25.805 26.722 Atomic orbital electron populations 1.20301 0.84061 1.04397 1.04659 1.25218 0.99817 0.86517 0.99652 1.73640 0.89808 1.24101 1.21295 1.84537 1.21009 1.23875 1.67157 1.27149 1.00947 0.82844 0.95482 1.22318 0.93958 0.95300 1.16246 1.17008 0.82003 0.83862 0.78729 1.90756 1.32194 1.79673 1.43052 1.47466 1.27157 1.08613 1.47721 1.22217 0.86020 1.01918 0.97693 1.21230 0.97428 0.79421 0.98640 0.90935 1.22035 1.03007 1.02845 0.92792 1.22491 0.99127 0.96887 0.89240 1.60039 1.12689 1.54621 1.03928 1.21628 0.98065 0.95812 0.91196 1.21118 0.81587 0.84644 0.89199 1.90575 1.54671 1.31756 1.73115 1.42020 1.35802 1.31290 1.14142 1.18985 1.20069 1.15635 0.91200 0.93143 1.26170 0.97709 1.01937 0.95723 1.69819 1.32848 1.43192 1.11882 0.85315 0.79424 0.77284 0.79139 1.17868 1.20251 1.15298 0.88060 0.90203 0.89305 0.72566 0.91525 0.87733 0.90416 0.92613 0.89900 0.89668 0.92428 0.88126 0.84761 0.90851 0.86056 0.77396 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.49 71.24 0.75 -0.86 16 2 C 0.05 1.30 7.59 45.16 0.34 1.64 16 3 N -0.38 -9.99 12.01 -44.77 -0.54 -10.53 16 4 O 0.09 2.13 11.06 77.00 0.85 2.98 16 5 C 0.02 0.34 10.14 67.61 0.69 1.03 16 6 C -0.27 -6.87 5.64 -18.75 -0.11 -6.97 16 7 C 0.60 16.72 7.64 86.65 0.66 17.39 16 8 O -0.58 -20.96 15.79 -4.07 -0.06 -21.02 16 9 N -0.58 -11.53 2.49 -826.52 -2.05 -13.58 16 10 C 0.06 0.75 8.25 127.77 1.05 1.80 16 11 C 0.14 2.42 2.87 44.99 0.13 2.55 16 12 H 0.07 1.75 6.91 -2.39 -0.02 1.74 16 13 C -0.15 -1.50 9.18 71.98 0.66 -0.84 16 14 C 0.05 0.87 4.98 86.30 0.43 1.30 16 15 N -0.68 -18.84 5.85 -517.94 -3.03 -21.87 16 16 C 0.07 1.84 6.17 85.56 0.53 2.36 16 17 C 0.45 19.89 7.82 87.66 0.69 20.57 16 18 O -0.62 -34.80 15.78 -3.07 -0.05 -34.85 16 19 N -0.59 -27.48 5.09 -306.98 -1.56 -29.05 16 20 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 21 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.94 -56.85 13.96 21.66 0.30 -56.55 16 24 Si 0.97 38.23 27.74 68.60 1.90 40.13 16 25 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 26 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 28 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.08 1.92 7.47 -2.39 -0.02 1.90 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.26 3.19 6.66 -2.91 -0.02 3.17 16 32 H 0.07 0.83 7.51 -2.39 -0.02 0.82 16 33 H 0.10 0.64 6.44 -2.39 -0.02 0.63 16 34 H 0.08 0.78 5.97 -2.39 -0.01 0.76 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.51 6.67 -2.39 -0.02 0.49 16 37 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 1.21 7.84 -2.39 -0.02 1.19 16 40 H 0.33 11.51 8.43 -89.69 -0.76 10.75 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 43 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 44 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -88.32 369.27 2.61 -85.71 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.29 Total: 37.70 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 7.14 Total: 20.92 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -6.88 Total: -131.58 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: 0.74 Total: -52.88 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -88.32 2.61 -85.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698844982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.156 kcal (2) G-P(sol) polarization free energy of solvation -88.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds