Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47441 * 272.37740 * 3 2 1 5 5 H 1.48502 * 109.47092 * 32.37650 * 3 2 1 6 6 H 1.48495 * 109.47110 * 152.37256 * 3 2 1 7 7 C 1.38806 * 119.99835 * 180.28331 * 2 1 3 8 8 H 1.07999 * 119.99988 * 343.34645 * 7 2 1 9 9 N 1.36931 * 119.99957 * 163.35206 * 7 2 1 10 10 C 1.47427 * 125.64890 * 324.47228 * 9 7 2 11 11 C 1.54913 * 104.83217 * 155.83415 * 10 9 7 12 12 C 1.55161 * 101.58054 * 37.01014 * 11 10 9 13 13 C 1.47022 * 125.65086 * 144.16379 * 9 7 2 14 14 H 1.09003 * 109.88370 * 300.51722 * 13 9 7 15 15 C 1.53009 * 109.87984 * 61.67837 * 13 9 7 16 16 N 1.46501 * 109.46930 * 298.24258 * 15 13 9 17 17 C 1.34778 * 119.99428 * 173.06875 * 16 15 13 18 18 O 1.21281 * 120.00192 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99607 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47202 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47606 * 180.02562 * 20 19 17 22 22 H 1.08999 * 110.53512 * 55.69587 * 21 20 19 23 23 N 1.47312 * 110.59614 * 292.87066 * 21 20 19 24 24 C 1.34524 * 106.61891 * 241.46901 * 23 21 20 25 25 O 1.21545 * 123.77114 * 179.97438 * 24 23 21 26 26 N 1.33787 * 112.46216 * 0.02562 * 24 23 21 27 27 C 1.35123 * 111.68344 * 359.91055 * 26 24 23 28 28 O 1.21230 * 127.33988 * 180.10524 * 27 26 24 29 29 H 0.97005 * 120.00442 * 359.71695 * 1 2 3 30 30 H 1.08993 * 110.36529 * 274.67254 * 10 9 7 31 31 H 1.09004 * 110.36590 * 36.89009 * 10 9 7 32 32 H 1.09004 * 110.99856 * 155.08396 * 11 10 9 33 33 H 1.08993 * 111.00480 * 278.93689 * 11 10 9 34 34 H 1.09007 * 110.71892 * 82.86082 * 12 11 10 35 35 H 1.08998 * 110.72087 * 205.95363 * 12 11 10 36 36 H 1.08996 * 109.47203 * 58.24764 * 15 13 9 37 37 H 1.09006 * 109.46897 * 178.24302 * 15 13 9 38 38 H 0.96994 * 120.00050 * 353.07578 * 16 15 13 39 39 H 1.09000 * 109.47140 * 300.00052 * 19 17 16 40 40 H 1.08993 * 109.47417 * 60.00452 * 19 17 16 41 41 H 1.09004 * 109.47441 * 300.00205 * 20 19 17 42 42 H 1.09003 * 109.47423 * 59.99599 * 20 19 17 43 43 H 0.97004 * 126.69433 * 61.50742 * 23 21 20 44 44 H 0.96997 * 124.18543 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4474 2.0755 -1.3988 5 1 1.4736 2.6376 0.7497 6 1 3.5719 1.4262 0.6492 7 6 2.0102 -1.2021 -0.0059 8 1 1.5042 -2.1191 0.2576 9 7 3.3365 -1.2253 -0.3458 10 6 3.9783 -0.3708 -1.3614 11 6 5.4702 -0.3156 -0.9478 12 6 5.7028 -1.7587 -0.4274 13 6 4.3576 -2.1020 0.2461 14 1 4.4221 -1.9237 1.3195 15 6 4.0040 -3.5666 -0.0207 16 7 2.7206 -3.8820 0.6116 17 6 2.1379 -5.0776 0.3934 18 8 2.6761 -5.8923 -0.3259 19 6 0.8175 -5.4019 1.0433 20 6 0.3804 -6.8101 0.6350 21 6 -0.9605 -7.1392 1.2943 22 1 -1.7056 -6.3844 1.0430 23 7 -0.8065 -7.2493 2.7552 24 6 -1.1478 -8.5083 3.0842 25 8 -1.1320 -8.9373 4.2214 26 7 -1.5054 -9.2357 2.0199 27 6 -1.4348 -8.5174 0.8776 28 8 -1.6954 -8.8937 -0.2449 29 1 -0.4851 0.8400 0.0041 30 1 3.8753 -0.8155 -2.3512 31 1 3.5419 0.6279 -1.3476 32 1 6.1061 -0.1028 -1.8071 33 1 5.6291 0.4158 -0.1554 34 1 5.9087 -2.4383 -1.2544 35 1 6.5150 -1.7804 0.2991 36 1 3.9301 -3.7325 -1.0954 37 1 4.7809 -4.2092 0.3936 38 1 2.2903 -3.2305 1.1870 39 1 0.9247 -5.3550 2.1270 40 1 0.0668 -4.6804 0.7208 41 1 0.2733 -6.8575 -0.4487 42 1 1.1311 -7.5315 0.9577 43 1 -0.5162 -6.5502 3.3617 44 1 -1.7830 -10.1641 2.0627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753116370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = -57.906461 kcal Electronic energy + Delta-G solvation = -27668.842306 eV Core-core repulsion = 23622.677789 eV Total energy + Delta-G solvation = -4046.164517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55530 -39.45636 -38.84671 -37.99463 -36.63227 -34.78205 -34.04741 -32.76853 -32.33741 -30.07102 -29.68970 -27.88480 -25.15545 -24.15620 -23.26465 -22.65282 -21.53208 -20.96022 -19.95974 -19.44647 -18.61321 -17.41988 -17.21501 -16.83451 -16.39078 -16.33373 -15.84224 -15.79956 -15.52803 -15.20112 -14.65222 -14.50568 -14.36725 -13.88562 -13.48131 -13.25810 -12.88573 -12.78410 -12.53948 -12.29683 -12.06670 -11.99638 -11.42635 -11.36545 -11.29418 -11.13087 -10.97805 -10.77277 -10.65300 -10.55162 -10.50252 -10.27552 -9.92769 -9.77586 -9.62439 -9.44241 -8.69962 -8.43501 -6.95342 -6.13781 -3.58711 1.32692 2.16319 2.74244 2.85911 3.04097 3.22426 3.36663 3.40941 3.59100 3.77269 4.38818 4.46116 4.60672 4.83861 4.86414 5.04990 5.11954 5.13387 5.25050 5.31619 5.36600 5.45729 5.58393 5.73929 5.78256 5.84271 5.88023 6.00885 6.03342 6.05391 6.19142 6.26650 6.32804 6.47590 6.50096 6.63387 6.77346 6.78780 6.98677 7.10737 7.74439 7.87364 8.03967 8.16909 8.63434 8.69920 9.50796 10.10611 11.00353 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002864 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.138153 B = 9773.269448 C =10546.924845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.035 3.965 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.258 4.258 8 H 0.092 0.908 9 N -0.602 5.602 10 C 0.116 3.884 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.048 0.952 15 C 0.116 3.884 16 N -0.706 5.706 17 C 0.510 3.490 18 O -0.561 6.561 19 C -0.141 4.141 20 C -0.100 4.100 21 C 0.090 3.910 22 H 0.136 0.864 23 N -0.719 5.719 24 C 0.705 3.295 25 O -0.549 6.549 26 N -0.683 5.683 27 C 0.531 3.469 28 O -0.461 6.461 29 H 0.265 0.735 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.414 0.586 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.443 0.557 44 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -10.135 3.908 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.166 4.166 3 Si 0.724 3.276 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.175 4.175 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.010 4.010 16 N -0.360 5.360 17 C 0.296 3.704 18 O -0.441 6.441 19 C -0.181 4.181 20 C -0.139 4.139 21 C -0.019 4.019 22 H 0.154 0.846 23 N -0.384 5.384 24 C 0.404 3.596 25 O -0.423 6.423 26 N -0.354 5.354 27 C 0.317 3.683 28 O -0.329 6.329 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.253 0.747 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.288 0.712 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.063 -10.934 3.395 11.633 hybrid contribution 0.108 1.340 0.445 1.416 sum 2.171 -9.594 3.839 10.559 Atomic orbital electron populations 1.69777 1.05751 1.26985 1.51866 1.25424 0.95197 0.98019 0.97967 0.86687 0.79887 0.83941 0.77048 1.21515 1.23259 1.19467 1.18649 0.81964 0.93850 1.44089 0.89099 1.44683 1.04842 1.43356 1.39922 1.21915 0.90824 0.95167 0.92918 1.22781 0.97512 0.96702 1.00467 1.22490 0.96461 0.96956 1.00091 1.21280 0.88961 0.89458 0.96704 0.93423 1.21911 0.84140 0.96842 0.98094 1.46280 1.23287 1.16469 1.49928 1.20375 0.86473 0.82029 0.81510 1.90660 1.65639 1.48594 1.39227 1.21616 0.96885 0.97788 1.01837 1.21519 0.92814 0.97154 1.02428 1.22263 1.01497 0.96786 0.81332 0.84640 1.45621 1.71587 1.12675 1.08538 1.15844 0.77719 0.81963 0.84067 1.91061 1.58490 1.74002 1.18765 1.44411 1.64825 1.17083 1.09076 1.20875 0.75626 0.87728 0.84120 1.90867 1.45873 1.76092 1.20068 0.92501 0.95065 0.94073 0.91527 0.91592 0.91244 0.91423 0.91733 0.93024 0.74660 0.89182 0.87544 0.88200 0.90013 0.71217 0.72659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 13.97 55.49 0.78 -24.36 16 2 C 0.04 0.92 5.46 -17.43 -0.10 0.83 16 3 Si 0.89 21.09 24.79 -169.99 -4.21 16.88 16 4 H -0.29 -6.77 6.76 56.52 0.38 -6.39 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.27 -6.18 7.06 56.52 0.40 -5.78 16 7 C -0.26 -6.31 9.49 -15.06 -0.14 -6.45 16 8 H 0.09 2.22 5.35 -52.49 -0.28 1.94 16 9 N -0.60 -12.84 2.69 -162.58 -0.44 -13.28 16 10 C 0.12 2.33 6.22 -2.53 -0.02 2.31 16 11 C -0.14 -2.16 7.08 -24.58 -0.17 -2.33 16 12 C -0.12 -1.75 6.47 -24.90 -0.16 -1.91 16 13 C 0.14 2.48 3.34 -66.96 -0.22 2.25 16 14 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.12 1.95 5.19 -4.04 -0.02 1.93 16 16 N -0.71 -11.66 4.36 -60.29 -0.26 -11.92 16 17 C 0.51 8.09 7.83 -10.99 -0.09 8.00 16 18 O -0.56 -10.66 15.96 5.56 0.09 -10.57 16 19 C -0.14 -1.56 5.61 -27.89 -0.16 -1.72 16 20 C -0.10 -1.03 4.26 -26.73 -0.11 -1.14 16 21 C 0.09 0.73 3.67 -68.20 -0.25 0.48 16 22 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 23 N -0.72 -5.62 5.98 -59.19 -0.35 -5.97 16 24 C 0.70 7.08 8.99 -88.03 -0.79 6.29 16 25 O -0.55 -7.47 18.04 5.33 0.10 -7.38 16 26 N -0.68 -5.75 5.72 -15.71 -0.09 -5.84 16 27 C 0.53 5.12 8.17 -10.39 -0.08 5.03 16 28 O -0.46 -5.83 18.02 5.60 0.10 -5.73 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.91 3.03 -51.93 -0.16 0.75 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.93 7.86 -51.92 -0.41 0.53 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.41 6.92 6.07 -40.82 -0.25 6.67 16 39 H 0.09 0.77 7.47 -51.93 -0.39 0.38 16 40 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.10 1.18 8.10 -51.93 -0.42 0.75 16 42 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.44 2.77 8.45 -40.82 -0.34 2.42 16 44 H 0.43 2.80 8.96 -40.82 -0.37 2.43 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -33.51 357.18 -7.23 -40.73 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.99 Total: 8.50 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -2.32 Total: 13.57 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.37 Total: -61.38 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.29 Total: -23.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.21 Total: 16.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.51 -7.23 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753116370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.175 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds