Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47441 * 272.37740 * 3 2 1 5 5 H 1.48502 * 109.47092 * 32.37650 * 3 2 1 6 6 H 1.48495 * 109.47110 * 152.37256 * 3 2 1 7 7 C 1.38806 * 119.99835 * 180.28331 * 2 1 3 8 8 H 1.07999 * 119.99988 * 343.34645 * 7 2 1 9 9 N 1.36931 * 119.99957 * 163.35206 * 7 2 1 10 10 C 1.47427 * 125.64890 * 324.47228 * 9 7 2 11 11 C 1.54913 * 104.83217 * 155.83415 * 10 9 7 12 12 C 1.55161 * 101.58054 * 37.01014 * 11 10 9 13 13 C 1.47022 * 125.65086 * 144.16379 * 9 7 2 14 14 H 1.09003 * 109.88370 * 300.51722 * 13 9 7 15 15 C 1.53009 * 109.87984 * 61.67837 * 13 9 7 16 16 N 1.46501 * 109.46930 * 298.24258 * 15 13 9 17 17 C 1.34778 * 119.99428 * 173.06875 * 16 15 13 18 18 O 1.21281 * 120.00192 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99607 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47202 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47606 * 180.02562 * 20 19 17 22 22 H 1.08999 * 110.53512 * 55.69587 * 21 20 19 23 23 N 1.47312 * 110.59614 * 292.87066 * 21 20 19 24 24 C 1.34524 * 106.61891 * 241.46901 * 23 21 20 25 25 O 1.21545 * 123.77114 * 179.97438 * 24 23 21 26 26 N 1.33787 * 112.46216 * 0.02562 * 24 23 21 27 27 C 1.35123 * 111.68344 * 359.91055 * 26 24 23 28 28 O 1.21230 * 127.33988 * 180.10524 * 27 26 24 29 29 H 0.97005 * 120.00442 * 359.71695 * 1 2 3 30 30 H 1.08993 * 110.36529 * 274.67254 * 10 9 7 31 31 H 1.09004 * 110.36590 * 36.89009 * 10 9 7 32 32 H 1.09004 * 110.99856 * 155.08396 * 11 10 9 33 33 H 1.08993 * 111.00480 * 278.93689 * 11 10 9 34 34 H 1.09007 * 110.71892 * 82.86082 * 12 11 10 35 35 H 1.08998 * 110.72087 * 205.95363 * 12 11 10 36 36 H 1.08996 * 109.47203 * 58.24764 * 15 13 9 37 37 H 1.09006 * 109.46897 * 178.24302 * 15 13 9 38 38 H 0.96994 * 120.00050 * 353.07578 * 16 15 13 39 39 H 1.09000 * 109.47140 * 300.00052 * 19 17 16 40 40 H 1.08993 * 109.47417 * 60.00452 * 19 17 16 41 41 H 1.09004 * 109.47441 * 300.00205 * 20 19 17 42 42 H 1.09003 * 109.47423 * 59.99599 * 20 19 17 43 43 H 0.97004 * 126.69433 * 61.50742 * 23 21 20 44 44 H 0.96997 * 124.18543 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4474 2.0755 -1.3988 5 1 1.4736 2.6376 0.7497 6 1 3.5719 1.4262 0.6492 7 6 2.0102 -1.2021 -0.0059 8 1 1.5042 -2.1191 0.2576 9 7 3.3365 -1.2253 -0.3458 10 6 3.9783 -0.3708 -1.3614 11 6 5.4702 -0.3156 -0.9478 12 6 5.7028 -1.7587 -0.4274 13 6 4.3576 -2.1020 0.2461 14 1 4.4221 -1.9237 1.3195 15 6 4.0040 -3.5666 -0.0207 16 7 2.7206 -3.8820 0.6116 17 6 2.1379 -5.0776 0.3934 18 8 2.6761 -5.8923 -0.3259 19 6 0.8175 -5.4019 1.0433 20 6 0.3804 -6.8101 0.6350 21 6 -0.9605 -7.1392 1.2943 22 1 -1.7056 -6.3844 1.0430 23 7 -0.8065 -7.2493 2.7552 24 6 -1.1478 -8.5083 3.0842 25 8 -1.1320 -8.9373 4.2214 26 7 -1.5054 -9.2357 2.0199 27 6 -1.4348 -8.5174 0.8776 28 8 -1.6954 -8.8937 -0.2449 29 1 -0.4851 0.8400 0.0041 30 1 3.8753 -0.8155 -2.3512 31 1 3.5419 0.6279 -1.3476 32 1 6.1061 -0.1028 -1.8071 33 1 5.6291 0.4158 -0.1554 34 1 5.9087 -2.4383 -1.2544 35 1 6.5150 -1.7804 0.2991 36 1 3.9301 -3.7325 -1.0954 37 1 4.7809 -4.2092 0.3936 38 1 2.2903 -3.2305 1.1870 39 1 0.9247 -5.3550 2.1270 40 1 0.0668 -4.6804 0.7208 41 1 0.2733 -6.8575 -0.4487 42 1 1.1311 -7.5315 0.9577 43 1 -0.5162 -6.5502 3.3617 44 1 -1.7830 -10.1641 2.0627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753116370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = -85.546944 kcal Electronic energy + Delta-G solvation = -27670.040887 eV Core-core repulsion = 23622.677789 eV Total energy + Delta-G solvation = -4047.363098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.35078 -40.76540 -39.73793 -39.40904 -37.53385 -35.66195 -35.37297 -34.59272 -33.22504 -31.73895 -30.99049 -28.83839 -26.58466 -25.61696 -24.29054 -23.55745 -22.45361 -22.18634 -21.38881 -20.77807 -19.41864 -18.99890 -18.01388 -17.90993 -17.76459 -17.48488 -16.85959 -16.81177 -16.67250 -16.43848 -16.05834 -15.56159 -15.34858 -15.22596 -14.85026 -14.67630 -14.31549 -13.99914 -13.81038 -13.56299 -13.50291 -13.03624 -12.97978 -12.92906 -12.57405 -12.25455 -12.19637 -12.02836 -11.98355 -11.69154 -11.51440 -11.49802 -11.38833 -11.34034 -10.75646 -10.62454 -10.52275 -9.82784 -8.71208 -8.12193 -5.51982 0.50949 1.33770 1.43370 1.43946 1.53301 1.77995 1.93973 2.12215 2.42489 2.51217 2.94948 3.11009 3.38590 3.56902 3.85784 3.93541 3.93952 4.03499 4.12944 4.25904 4.29568 4.36149 4.41023 4.52669 4.67708 4.72311 4.78046 4.90010 4.95625 5.00948 5.01738 5.08104 5.13360 5.16339 5.33664 5.50162 5.66585 5.80311 5.85722 5.93158 6.24913 6.36136 6.73389 6.85992 7.12074 7.39353 7.60269 8.27318 9.04526 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002864 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.138153 B = 9773.269448 C =10546.924845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.019 4.019 3 Si 0.940 3.060 4 H -0.292 1.292 5 H -0.317 1.317 6 H -0.257 1.257 7 C -0.236 4.236 8 H 0.087 0.913 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.127 4.127 12 C -0.112 4.112 13 C 0.140 3.860 14 H 0.053 0.947 15 C 0.121 3.879 16 N -0.711 5.711 17 C 0.503 3.497 18 O -0.596 6.596 19 C -0.133 4.133 20 C -0.092 4.092 21 C 0.101 3.899 22 H 0.162 0.838 23 N -0.703 5.703 24 C 0.707 3.293 25 O -0.584 6.584 26 N -0.672 5.672 27 C 0.536 3.464 28 O -0.492 6.492 29 H 0.260 0.740 30 H 0.027 0.973 31 H 0.021 0.979 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.413 0.587 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.452 0.548 44 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -10.197 4.625 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.216 4.216 3 Si 0.772 3.228 4 H -0.220 1.220 5 H -0.247 1.247 6 H -0.181 1.181 7 C -0.365 4.365 8 H 0.104 0.896 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.150 4.150 13 C 0.034 3.966 14 H 0.071 0.929 15 C -0.005 4.005 16 N -0.363 5.363 17 C 0.291 3.709 18 O -0.478 6.478 19 C -0.172 4.172 20 C -0.131 4.131 21 C -0.008 4.008 22 H 0.179 0.821 23 N -0.368 5.368 24 C 0.406 3.594 25 O -0.461 6.461 26 N -0.343 5.343 27 C 0.322 3.678 28 O -0.362 6.362 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.252 0.748 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.299 0.701 44 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.831 -10.992 4.121 12.348 hybrid contribution -0.364 1.268 0.171 1.331 sum 3.467 -9.723 4.292 11.180 Atomic orbital electron populations 1.69876 1.06938 1.27002 1.55197 1.25929 0.95644 1.00488 0.99512 0.85907 0.79205 0.81147 0.76493 1.22048 1.24682 1.18109 1.18847 0.83490 0.93396 1.40811 0.89575 1.44879 1.04697 1.44075 1.40809 1.22069 0.93742 0.93670 0.92650 1.22751 0.94537 0.97606 1.01615 1.22524 0.95457 0.96032 1.01021 1.21484 0.89481 0.88592 0.97037 0.92947 1.21819 0.84962 0.96935 0.96822 1.46360 1.23390 1.16746 1.49847 1.21156 0.87595 0.81239 0.80929 1.90643 1.66900 1.49479 1.40787 1.21632 0.94167 0.98120 1.03316 1.21368 0.93600 0.96517 1.01591 1.22200 1.00910 0.96604 0.81039 0.82083 1.45557 1.70673 1.12181 1.08428 1.15893 0.77467 0.82402 0.83639 1.91047 1.60134 1.74730 1.20166 1.44305 1.64080 1.17512 1.08411 1.20984 0.74910 0.88168 0.83695 1.90862 1.47396 1.76732 1.21238 0.93113 0.95500 0.96086 0.88584 0.91686 0.90101 0.88226 0.94069 0.91149 0.74787 0.86044 0.86969 0.89842 0.90790 0.70057 0.71663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.60 13.97 21.65 0.30 -53.29 16 2 C -0.02 -1.01 5.46 84.86 0.46 -0.54 16 3 Si 0.94 43.72 24.79 68.60 1.70 45.42 16 4 H -0.29 -13.60 6.76 99.48 0.67 -12.92 16 5 H -0.32 -15.24 7.11 99.48 0.71 -14.54 16 6 H -0.26 -11.18 7.06 99.48 0.70 -10.47 16 7 C -0.24 -11.47 9.49 84.03 0.80 -10.68 16 8 H 0.09 4.19 5.35 -2.91 -0.02 4.18 16 9 N -0.62 -25.51 2.69 -668.27 -1.80 -27.31 16 10 C 0.10 3.95 6.22 86.86 0.54 4.49 16 11 C -0.13 -3.56 7.08 31.99 0.23 -3.34 16 12 C -0.11 -2.79 6.47 31.78 0.21 -2.58 16 13 C 0.14 4.50 3.34 45.34 0.15 4.65 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 15 C 0.12 3.84 5.19 86.38 0.45 4.29 16 16 N -0.71 -22.63 4.36 -463.04 -2.02 -24.65 16 17 C 0.50 15.45 7.83 87.66 0.69 16.14 16 18 O -0.60 -22.40 15.96 -3.03 -0.05 -22.44 16 19 C -0.13 -2.70 5.61 29.85 0.17 -2.53 16 20 C -0.09 -1.76 4.26 30.59 0.13 -1.63 16 21 C 0.10 1.45 3.67 44.37 0.16 1.61 16 22 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 23 N -0.70 -9.45 5.98 -459.61 -2.75 -12.20 16 24 C 0.71 13.16 8.99 179.44 1.61 14.78 16 25 O -0.58 -15.31 18.04 -3.86 -0.07 -15.38 16 26 N -0.67 -10.52 5.72 -440.67 -2.52 -13.04 16 27 C 0.54 9.70 8.17 87.88 0.72 10.41 16 28 O -0.49 -12.19 18.02 -2.87 -0.05 -12.25 16 29 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.02 0.90 3.03 -2.39 -0.01 0.90 16 32 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 1.86 7.86 -2.38 -0.02 1.84 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.51 8.11 -2.39 -0.02 1.49 16 37 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.41 13.32 6.07 -92.71 -0.56 12.75 16 39 H 0.12 1.71 7.47 -2.39 -0.02 1.70 16 40 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.08 1.93 8.10 -2.38 -0.02 1.91 16 42 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 43 H 0.45 4.45 8.45 -92.71 -0.78 3.67 16 44 H 0.44 5.30 8.96 -92.71 -0.83 4.47 16 Total: -1.00 -73.57 357.18 -2.08 -75.65 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -1.14 Total: 24.42 kcal Atomic # 6 Polarization: 28.76 SS G_CDS: 6.31 Total: 35.07 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -8.78 Total: -130.49 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.17 Total: -50.07 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.70 Total: 45.42 kcal Total: -73.57 -2.08 -75.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753116370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.895 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds