Wall clock time and date at job start Tue Mar 31 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32518 * 120.41103 * 2 1 4 4 C 1.31757 * 120.96455 * 180.02562 * 3 2 1 5 5 N 1.31794 * 121.81275 * 359.97438 * 4 3 2 6 6 C 1.32789 * 120.71946 * 0.02562 * 5 4 3 7 7 O 1.35523 * 120.51495 * 180.27517 * 6 5 4 8 8 C 1.38187 * 120.40714 * 180.02562 * 2 1 3 9 9 C 1.50700 * 120.83008 * 359.95685 * 8 2 1 10 10 C 1.52994 * 109.47342 * 270.02118 * 9 8 2 11 11 C 1.50697 * 109.47337 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00079 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00094 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00061 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47004 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.47673 * 60.00334 * 15 14 13 17 17 O 1.42908 * 109.47268 * 300.00126 * 15 14 13 18 18 C 1.53004 * 109.47096 * 180.02562 * 15 14 13 19 19 N 1.46501 * 109.47032 * 184.99814 * 18 15 14 20 20 C 1.36940 * 119.99580 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00249 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99822 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99956 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47324 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46802 * 120.00274 * 24 22 20 27 27 H 1.48498 * 109.47301 * 240.00243 * 24 22 20 28 28 H 1.09000 * 109.47070 * 269.97940 * 1 2 3 29 29 H 1.08997 * 109.46794 * 29.98073 * 1 2 3 30 30 H 1.08999 * 109.46756 * 149.98080 * 1 2 3 31 31 H 1.08001 * 119.09540 * 180.02562 * 4 3 2 32 32 H 0.96702 * 113.99416 * 269.71616 * 7 6 5 33 33 H 1.09007 * 109.47031 * 30.02170 * 9 8 2 34 34 H 1.09003 * 109.47322 * 150.01939 * 9 8 2 35 35 H 1.08998 * 109.47357 * 300.00008 * 10 9 8 36 36 H 1.09003 * 109.47058 * 59.99659 * 10 9 8 37 37 H 0.96998 * 119.99970 * 0.02562 * 13 11 10 38 38 H 1.08998 * 109.47285 * 300.00954 * 14 13 11 39 39 H 1.08996 * 109.46633 * 60.00360 * 14 13 11 40 40 H 0.96703 * 113.99190 * 300.00053 * 17 15 14 41 41 H 1.08997 * 109.46818 * 304.99767 * 18 15 14 42 42 H 1.09000 * 109.47117 * 65.00015 * 18 15 14 43 43 H 0.96996 * 120.00710 * 359.97438 * 19 18 15 44 44 H 0.96995 * 120.00226 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1779 1.1429 0.0000 4 6 3.4954 1.1556 -0.0005 5 7 4.2009 0.0424 -0.0005 6 6 3.5998 -1.1417 -0.0005 7 8 4.3294 -2.2838 0.0050 8 6 2.2065 -1.1918 -0.0005 9 6 1.4813 -2.5129 -0.0001 10 6 1.2364 -2.9598 1.4424 11 6 0.5107 -4.2805 1.4428 12 8 0.2186 -4.8123 0.3926 13 7 0.1872 -4.8714 2.6102 14 6 -0.5178 -6.1556 2.6105 15 6 -0.7628 -6.6024 4.0531 16 1 -1.3681 -5.8557 4.5670 17 8 0.4894 -6.7462 4.7265 18 6 -1.4986 -7.9440 4.0535 19 7 -1.8387 -8.3140 5.4296 20 6 -2.5056 -9.4837 5.6791 21 1 -2.7812 -10.1332 4.8614 22 6 -2.8275 -9.8346 6.9831 23 7 -2.4921 -9.0428 7.9795 24 14 -3.7378 -11.4298 7.3234 25 1 -3.9977 -12.1345 6.0424 26 1 -2.9108 -12.2934 8.2041 27 1 -5.0282 -11.1299 7.9945 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 4.0114 2.1043 -0.0001 32 1 4.5412 -2.6194 -0.8768 33 1 0.5261 -2.4032 -0.5137 34 1 2.0865 -3.2597 -0.5141 35 1 2.1915 -3.0695 1.9560 36 1 0.6312 -2.2130 1.9564 37 1 0.4211 -4.4463 3.4501 38 1 -1.4731 -6.0459 2.0972 39 1 0.0872 -6.9023 2.0963 40 1 1.0805 -7.3964 4.3228 41 1 -2.4114 -7.8579 3.4642 42 1 -0.8567 -8.7105 3.6193 43 1 -1.5915 -7.7305 6.1640 44 1 -2.7172 -9.2877 8.8906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753917434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:57 Heat of formation + Delta-G solvation = -111.358262 kcal Electronic energy + Delta-G solvation = -26323.775359 eV Core-core repulsion = 22275.292998 eV Total energy + Delta-G solvation = -4048.482361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.36431 -40.80600 -38.96678 -38.68943 -36.32209 -36.05558 -35.23706 -34.24027 -33.21032 -31.83717 -30.52973 -29.40387 -27.42118 -26.13145 -24.41340 -23.82433 -22.98706 -22.73672 -21.19710 -19.84341 -19.25574 -19.11292 -18.37093 -17.70185 -17.27305 -17.21095 -16.51393 -16.48123 -16.22090 -15.98985 -15.64090 -15.21803 -15.16914 -14.91854 -14.65700 -14.27722 -14.24790 -14.07555 -13.84206 -13.71354 -13.49538 -13.25800 -13.15804 -12.95783 -12.85270 -12.78680 -12.12179 -12.03214 -11.96256 -11.81254 -11.61095 -11.33529 -11.16610 -10.99895 -10.81700 -10.35183 -10.20967 -10.09669 -9.01757 -7.95853 -5.25257 -0.24036 -0.09182 1.47714 1.48358 1.58525 1.64914 2.14063 2.34376 2.55712 2.64298 3.06992 3.34152 3.36036 3.46830 3.57939 3.62137 3.74860 3.91351 4.01950 4.11264 4.20460 4.22183 4.32376 4.41351 4.47324 4.60255 4.63895 4.70820 4.72654 4.77400 4.94014 5.00301 5.06622 5.08811 5.22168 5.38248 5.44257 5.48396 5.88791 6.25635 6.47999 6.54495 6.79711 7.02283 7.24225 7.32662 8.08117 8.30783 9.27568 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030606 B = 0.001781 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.645552 B =15717.431798 C =15832.696039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.187 3.813 3 N -0.542 5.542 4 C 0.313 3.687 5 N -0.568 5.568 6 C 0.358 3.642 7 O -0.482 6.482 8 C -0.203 4.203 9 C -0.045 4.045 10 C -0.126 4.126 11 C 0.515 3.485 12 O -0.581 6.581 13 N -0.715 5.715 14 C 0.102 3.898 15 C 0.107 3.893 16 H 0.100 0.900 17 O -0.564 6.564 18 C 0.122 3.878 19 N -0.740 5.740 20 C -0.247 4.247 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.968 5.968 24 Si 0.975 3.025 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.293 1.293 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.227 0.773 32 H 0.426 0.574 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.414 0.586 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.385 0.615 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 20.852 -19.980 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.042 3.958 3 N -0.258 5.258 4 C 0.026 3.974 5 N -0.293 5.293 6 C 0.171 3.829 7 O -0.292 6.292 8 C -0.209 4.209 9 C -0.084 4.084 10 C -0.165 4.165 11 C 0.303 3.697 12 O -0.461 6.461 13 N -0.367 5.367 14 C -0.023 4.023 15 C 0.047 3.953 16 H 0.118 0.882 17 O -0.370 6.370 18 C -0.006 4.006 19 N -0.383 5.383 20 C -0.379 4.379 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.804 3.196 25 H -0.190 1.190 26 H -0.221 1.221 27 H -0.220 1.220 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.243 0.757 32 H 0.289 0.711 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.251 0.749 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.234 0.766 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.208 0.792 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.008 21.573 -19.819 31.295 hybrid contribution -0.176 -1.855 0.348 1.896 sum 10.832 19.718 -19.471 29.753 Atomic orbital electron populations 1.21010 0.85854 1.05203 1.05031 1.22006 0.98920 0.86746 0.88079 1.68370 1.10634 1.30531 1.16312 1.25359 0.86459 0.96568 0.89003 1.68041 1.43972 0.99580 1.17712 1.19538 0.87201 0.85808 0.90341 1.84689 1.73459 1.35053 1.36018 1.21590 0.93877 0.98432 1.06992 1.20055 1.01039 0.91211 0.96050 1.21582 1.02153 0.93676 0.99109 1.21023 0.78475 0.87275 0.82964 1.90698 1.56119 1.66840 1.32458 1.45880 1.58933 1.22460 1.09420 1.21812 0.98033 0.85951 0.96484 1.22107 0.85359 0.96461 0.91327 0.88196 1.86561 1.27823 1.64747 1.57894 1.21426 0.97429 0.94819 0.86895 1.42436 1.68705 1.23871 1.03314 1.19691 1.27695 0.98106 0.92428 0.90505 1.25608 1.03378 1.02282 0.95638 1.69835 1.53714 1.39569 0.98745 0.85053 0.77484 0.79207 0.77866 1.18965 1.22082 1.21995 0.88109 0.89231 0.88540 0.75709 0.71140 0.88831 0.90059 0.87986 0.86821 0.74937 0.90527 0.91034 0.76646 0.94787 0.95192 0.79162 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.84 71.24 0.70 -0.30 16 2 C 0.19 2.62 6.82 42.45 0.29 2.91 16 3 N -0.54 -8.69 10.37 -188.29 -1.95 -10.64 16 4 C 0.31 4.63 12.28 180.90 2.22 6.85 16 5 N -0.57 -10.17 10.46 -312.89 -3.27 -13.44 16 6 C 0.36 5.85 7.81 84.83 0.66 6.51 16 7 O -0.48 -6.67 12.76 -88.27 -1.13 -7.80 16 8 C -0.20 -2.86 5.18 -19.59 -0.10 -2.96 16 9 C -0.04 -0.59 4.09 29.85 0.12 -0.46 16 10 C -0.13 -1.66 5.68 29.85 0.17 -1.49 16 11 C 0.51 10.23 7.83 87.66 0.69 10.92 16 12 O -0.58 -15.79 15.98 -3.04 -0.05 -15.83 16 13 N -0.72 -13.78 5.45 -463.07 -2.52 -16.30 16 14 C 0.10 2.35 5.34 86.38 0.46 2.81 16 15 C 0.11 3.03 3.09 30.59 0.09 3.12 16 16 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 17 O -0.56 -16.44 13.03 -148.98 -1.94 -18.38 16 18 C 0.12 4.48 5.90 86.38 0.51 4.98 16 19 N -0.74 -36.85 5.55 -343.44 -1.91 -38.76 16 20 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 22 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 24 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.68 6.07 -2.39 -0.01 0.66 16 31 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.43 1.94 9.06 -74.06 -0.67 1.27 16 33 H 0.09 1.17 6.04 -2.38 -0.01 1.15 16 34 H 0.08 1.16 7.59 -2.39 -0.02 1.14 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.41 6.79 8.35 -92.71 -0.77 6.02 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.38 9.16 9.04 -74.06 -0.67 8.49 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.38 20.31 7.67 -92.71 -0.71 19.60 16 44 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -77.68 378.17 -5.08 -82.76 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -1.74 Total: 33.46 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 7.12 Total: 16.10 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -9.37 Total: -138.24 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -3.12 Total: -42.01 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.68 -5.08 -82.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753917434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.593 kcal (2) G-P(sol) polarization free energy of solvation -77.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds