Wall clock time and date at job start Tue Mar 31 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32226 * 120.51101 * 2 1 4 4 C 1.31904 * 121.14063 * 180.33661 * 3 2 1 5 5 N 1.31754 * 122.19839 * 359.64947 * 4 3 2 6 6 C 1.32740 * 120.86788 * 0.03265 * 5 4 3 7 7 O 1.35288 * 120.61487 * 180.02562 * 6 5 4 8 8 C 1.39761 * 120.51074 * 179.71555 * 2 1 3 9 9 C 1.47535 * 120.98066 * 359.97438 * 8 2 1 10 10 O 1.21593 * 120.00010 * 269.72232 * 9 8 2 11 11 N 1.34773 * 120.00040 * 89.99401 * 9 8 2 12 12 C 1.46506 * 119.99968 * 359.73161 * 11 9 8 13 13 C 1.46500 * 120.00431 * 179.72702 * 11 9 8 14 14 C 1.52999 * 109.47235 * 89.99765 * 13 11 9 15 15 O 1.42905 * 109.46503 * 65.00569 * 14 13 11 16 16 C 1.42898 * 113.99742 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47145 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.46707 * 65.00201 * 17 16 15 19 19 C 1.36943 * 119.99488 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00121 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99716 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00078 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99918 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47546 * 60.00023 * 23 21 19 25 25 H 1.48500 * 109.47275 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47022 * 299.99829 * 23 21 19 27 27 H 1.09002 * 109.47099 * 270.28811 * 1 2 3 28 28 H 1.09002 * 109.47619 * 30.28121 * 1 2 3 29 29 H 1.08993 * 109.47333 * 150.28421 * 1 2 3 30 30 H 1.07998 * 118.89805 * 179.67895 * 4 3 2 31 31 H 0.96697 * 114.00195 * 269.97617 * 7 6 5 32 32 H 1.08997 * 109.47508 * 89.99598 * 12 11 9 33 33 H 1.09003 * 109.47017 * 209.99823 * 12 11 9 34 34 H 1.09002 * 109.46900 * 329.99415 * 12 11 9 35 35 H 1.08999 * 109.47653 * 210.00798 * 13 11 9 36 36 H 1.09006 * 109.46908 * 330.00208 * 13 11 9 37 37 H 1.09000 * 109.46867 * 185.00033 * 14 13 11 38 38 H 1.08997 * 109.47433 * 305.00808 * 14 13 11 39 39 H 1.09008 * 109.46921 * 299.99992 * 16 15 14 40 40 H 1.09003 * 109.47575 * 59.99556 * 16 15 14 41 41 H 1.09002 * 109.46992 * 184.99493 * 17 16 15 42 42 H 1.08996 * 109.47307 * 304.99956 * 17 16 15 43 43 H 0.96993 * 120.00601 * 0.02562 * 18 17 16 44 44 H 0.97002 * 120.00035 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1392 0.0000 4 6 3.4972 1.1537 -0.0066 5 7 4.2115 0.0466 -0.0067 6 6 3.6233 -1.1434 -0.0007 7 8 4.3618 -2.2770 -0.0003 8 6 2.2165 -1.2041 0.0060 9 6 1.5124 -2.5005 0.0130 10 8 1.2271 -3.0317 1.0689 11 7 1.1902 -3.0987 -1.1510 12 6 1.5340 -2.4587 -2.4232 13 6 0.4963 -4.3889 -1.1441 14 6 -1.0157 -4.1548 -1.1411 15 8 -1.4024 -3.5242 -2.3638 16 6 -2.8030 -3.2589 -2.4634 17 6 -3.1006 -2.5861 -3.8048 18 7 -2.8043 -3.5186 -4.8952 19 6 -2.9957 -3.1345 -6.1956 20 1 -3.3648 -2.1440 -6.4174 21 6 -2.7145 -4.0179 -7.2287 22 7 -2.2643 -5.2247 -6.9585 23 14 -2.9750 -3.4937 -9.0027 24 1 -2.1258 -2.3123 -9.2997 25 1 -2.6044 -4.6106 -9.9084 26 1 -4.4027 -3.1418 -9.2103 27 1 -0.3633 0.0052 1.0277 28 1 -0.3634 0.8874 -0.5182 29 1 -0.3633 -0.8925 -0.5094 30 1 4.0087 2.1049 -0.0117 31 1 4.5725 -2.6094 -0.8836 32 1 2.5243 -2.7867 -2.7391 33 1 0.8004 -2.7371 -3.1799 34 1 1.5328 -1.3760 -2.2972 35 1 0.7745 -4.9559 -2.0325 36 1 0.7790 -4.9487 -0.2525 37 1 -1.5311 -5.1106 -1.0465 38 1 -1.2825 -3.5133 -0.3013 39 1 -3.3559 -4.1960 -2.3958 40 1 -3.1065 -2.5987 -1.6509 41 1 -4.1526 -2.3037 -3.8442 42 1 -2.4811 -1.6955 -3.9100 43 1 -2.4732 -4.4083 -4.6960 44 1 -2.0681 -5.8422 -7.6804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755876868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:17 Heat of formation + Delta-G solvation = -49.420668 kcal Electronic energy + Delta-G solvation = -28042.295261 eV Core-core repulsion = 23996.498716 eV Total energy + Delta-G solvation = -4045.796546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82710 -39.78596 -38.16423 -37.78967 -35.72314 -34.63386 -34.37512 -32.46904 -31.50926 -30.10330 -28.95226 -27.69516 -26.71591 -25.40821 -23.55099 -23.25633 -22.93827 -21.18829 -20.00588 -19.31473 -18.48077 -17.68690 -17.20328 -16.92068 -16.55064 -16.19611 -15.87671 -15.33722 -15.12160 -14.68299 -14.58109 -14.09116 -13.92635 -13.71960 -13.22542 -13.18177 -13.11964 -12.98751 -12.96147 -12.71905 -12.47142 -12.42306 -11.90555 -11.72959 -11.63277 -11.45319 -10.95236 -10.81045 -10.74727 -10.55861 -10.22310 -10.07176 -9.84403 -9.73915 -9.71127 -9.30970 -8.91138 -8.85498 -6.91648 -5.76265 -3.04539 0.20568 0.49021 2.17676 2.67775 2.86418 3.18949 3.42910 3.47491 3.48366 3.57052 3.83323 3.92101 4.09139 4.53352 4.58985 4.71203 4.90168 4.98952 5.04521 5.16019 5.20833 5.29644 5.35155 5.38326 5.47852 5.51581 5.55435 5.58048 5.65192 5.75661 5.81799 5.86060 5.92710 6.26743 6.31085 6.40595 6.56660 6.70123 6.87131 7.07334 7.50855 7.57790 7.68249 7.81668 8.42430 9.54049 10.12225 10.48156 11.46397 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.002949 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.555896 B = 9491.585554 C = 9852.073702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.229 3.771 3 N -0.523 5.523 4 C 0.334 3.666 5 N -0.541 5.541 6 C 0.397 3.603 7 O -0.468 6.468 8 C -0.243 4.243 9 C 0.577 3.423 10 O -0.525 6.525 11 N -0.594 5.594 12 C 0.076 3.924 13 C 0.119 3.881 14 C 0.044 3.956 15 O -0.371 6.371 16 C 0.058 3.942 17 C 0.155 3.845 18 N -0.727 5.727 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.207 0.793 31 H 0.411 0.589 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.387 0.613 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.076 8.278 15.116 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 N -0.239 5.239 4 C 0.047 3.953 5 N -0.266 5.266 6 C 0.209 3.791 7 O -0.276 6.276 8 C -0.252 4.252 9 C 0.362 3.638 10 O -0.401 6.401 11 N -0.327 5.327 12 C -0.067 4.067 13 C -0.003 4.003 14 C -0.034 4.034 15 O -0.290 6.290 16 C -0.018 4.018 17 C 0.027 3.973 18 N -0.372 5.372 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.223 0.777 31 H 0.272 0.728 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.221 0.779 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.468 8.936 15.959 21.074 hybrid contribution -0.388 -0.918 -1.263 1.609 sum 10.080 8.018 14.696 19.541 Atomic orbital electron populations 1.20960 0.86749 1.05152 1.04505 1.21840 0.97856 0.85884 0.86096 1.68324 1.10176 1.29308 1.16136 1.24998 0.86259 0.96118 0.87920 1.68059 1.42587 0.98641 1.17349 1.19331 0.85425 0.85974 0.88390 1.84682 1.72581 1.35955 1.34342 1.21681 0.95120 0.96877 1.11546 1.17628 0.78574 0.83576 0.84069 1.90818 1.54182 1.64453 1.30658 1.47754 1.57194 1.21809 1.05903 1.21927 1.01663 0.97390 0.85690 1.21648 0.90206 0.84148 1.04336 1.22860 0.95169 0.97505 0.87911 1.87993 1.24212 1.80135 1.36694 1.22791 0.81626 0.99070 0.98337 1.20683 0.97273 0.93439 0.85867 1.42276 1.79420 1.14467 1.01021 1.19187 1.36648 0.98128 0.83162 0.91341 1.24718 1.02150 0.96188 0.97836 1.69657 1.51130 1.06135 1.31183 0.86286 0.77829 0.77199 0.84969 1.21306 1.21708 1.21317 0.88757 0.88670 0.89575 0.77668 0.72806 0.92889 0.87911 0.92035 0.88674 0.88391 0.92290 0.93488 0.93334 0.93955 0.95105 0.95715 0.77930 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.85 36.00 0.35 -0.76 16 2 C 0.23 2.53 6.43 -81.86 -0.53 2.01 16 3 N -0.52 -5.52 10.36 -10.53 -0.11 -5.62 16 4 C 0.33 3.08 12.27 -92.09 -1.13 1.95 16 5 N -0.54 -5.88 10.45 -14.32 -0.15 -6.03 16 6 C 0.40 4.49 7.85 -16.19 -0.13 4.36 16 7 O -0.47 -4.71 13.10 -17.56 -0.23 -4.94 16 8 C -0.24 -2.86 3.96 -104.57 -0.41 -3.27 16 9 C 0.58 7.42 5.37 -12.47 -0.07 7.36 16 10 O -0.53 -8.41 16.69 5.28 0.09 -8.32 16 11 N -0.59 -6.83 2.84 -182.80 -0.52 -7.35 16 12 C 0.08 0.80 10.07 59.85 0.60 1.40 16 13 C 0.12 1.36 5.81 -4.04 -0.02 1.34 16 14 C 0.04 0.55 6.28 37.16 0.23 0.78 16 15 O -0.37 -5.82 9.11 -35.23 -0.32 -6.15 16 16 C 0.06 0.92 6.07 37.16 0.23 1.15 16 17 C 0.16 3.03 6.65 -4.04 -0.03 3.00 16 18 N -0.73 -18.16 5.55 -59.91 -0.33 -18.49 16 19 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.90 7.18 -51.93 -0.37 0.52 16 30 H 0.21 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.41 2.13 9.06 45.56 0.41 2.54 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.10 1.33 7.11 -51.93 -0.37 0.96 16 34 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 35 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 36 H 0.10 1.08 7.42 -51.93 -0.39 0.70 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.39 10.25 7.67 -40.82 -0.31 9.94 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -35.30 378.67 -6.87 -42.17 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.56 Total: 6.98 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -1.14 Total: 12.07 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -0.39 Total: -64.58 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.46 Total: -19.41 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.30 -6.87 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755876868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.251 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds