Wall clock time and date at job start Tue Mar 31 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 119.99967 * 2 1 4 4 O 1.21285 * 120.00139 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00164 * 0.02562 * 3 2 1 6 6 N 1.46503 * 109.47221 * 180.02562 * 5 3 2 7 7 C 1.34525 * 126.69350 * 90.02725 * 6 5 3 8 8 O 1.21537 * 123.76978 * 359.95655 * 7 6 5 9 9 N 1.33790 * 112.45930 * 179.97438 * 7 6 5 10 10 C 1.34764 * 111.64272 * 359.97438 * 9 7 6 11 11 O 1.21242 * 127.15807 * 180.02562 * 10 9 7 12 12 C 1.47314 * 126.68597 * 269.71018 * 6 5 3 13 13 C 1.52999 * 110.59849 * 298.55992 * 12 6 5 14 14 C 1.52997 * 110.59998 * 61.50952 * 12 6 5 15 15 C 1.46498 * 119.99952 * 180.02562 * 2 1 3 16 16 C 1.53498 * 114.20710 * 299.99345 * 15 2 1 17 17 N 1.47067 * 87.98492 * 87.52151 * 16 15 2 18 18 C 1.36942 * 136.06015 * 207.08701 * 17 16 15 19 19 H 1.08004 * 119.99347 * 7.75208 * 18 17 16 20 20 C 1.38804 * 120.00122 * 187.74457 * 18 17 16 21 21 N 1.31616 * 119.99944 * 173.06636 * 20 18 17 22 22 Si 1.86802 * 120.00216 * 353.07036 * 20 18 17 23 23 H 1.48493 * 109.47387 * 175.20665 * 22 20 18 24 24 H 1.48496 * 109.47320 * 295.20989 * 22 20 18 25 25 H 1.48507 * 109.46785 * 55.20955 * 22 20 18 26 26 C 1.47068 * 87.88610 * 27.34499 * 17 16 15 27 27 H 1.08997 * 109.46792 * 269.99735 * 1 2 3 28 28 H 1.08997 * 109.47184 * 29.99889 * 1 2 3 29 29 H 1.09001 * 109.47056 * 150.00356 * 1 2 3 30 30 H 1.09003 * 109.47153 * 299.99951 * 5 3 2 31 31 H 1.09001 * 109.47374 * 60.00238 * 5 3 2 32 32 H 0.96996 * 124.17469 * 180.02562 * 9 7 6 33 33 H 1.09005 * 109.47123 * 60.00604 * 13 12 6 34 34 H 1.09003 * 109.46810 * 179.97438 * 13 12 6 35 35 H 1.08995 * 109.47557 * 300.00608 * 13 12 6 36 36 H 1.09003 * 109.46878 * 59.99786 * 14 12 6 37 37 H 1.09003 * 109.47080 * 179.97438 * 14 12 6 38 38 H 1.08993 * 109.47198 * 300.00028 * 14 12 6 39 39 H 1.08998 * 113.28362 * 166.93263 * 15 2 1 40 40 H 1.09002 * 113.46537 * 332.74332 * 16 15 2 41 41 H 1.08995 * 113.52595 * 202.31149 * 16 15 2 42 42 H 0.97001 * 120.00186 * 1.94734 * 21 20 18 43 43 H 1.08991 * 113.46677 * 87.43420 * 26 17 16 44 44 H 1.08994 * 113.46994 * 217.88229 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3375 3.5858 -0.0002 7 6 2.8586 4.1971 -1.0792 8 8 2.5938 3.8880 -2.2244 9 7 3.7013 5.1830 -0.7509 10 6 3.8150 5.3153 0.5854 11 8 4.4988 6.1160 1.1865 12 6 2.9058 4.2586 1.1807 13 6 1.7993 4.9059 2.0159 14 6 3.7129 3.2715 2.0263 15 6 2.1975 -1.2687 -0.0006 16 6 1.9061 -2.1643 1.2116 17 7 0.7743 -2.7260 0.4590 18 6 -0.4280 -3.3026 0.7706 19 1 -0.7736 -3.3114 1.7939 20 6 -1.2026 -3.8758 -0.2285 21 7 -2.2893 -4.5485 0.0857 22 14 -0.7027 -3.6923 -2.0190 23 1 -1.6217 -4.4862 -2.8734 24 1 -0.7761 -2.2615 -2.4093 25 1 0.6874 -4.1835 -2.1975 26 6 1.5048 -2.4017 -0.7756 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.7584 2.5302 -0.8892 31 1 0.7591 2.5299 0.8908 32 1 4.1716 5.7349 -1.3951 33 1 1.0997 4.1391 2.3490 34 1 2.2394 5.3972 2.8837 35 1 1.2704 5.6419 1.4105 36 1 4.5264 2.8611 1.4280 37 1 4.1247 3.7878 2.8934 38 1 3.0630 2.4624 2.3595 39 1 3.2576 -1.1541 -0.2269 40 1 1.6040 -1.6085 2.0992 41 1 2.6938 -2.8893 1.4162 42 1 -2.5644 -4.6200 1.0132 43 1 2.1872 -3.1890 -1.0956 44 1 0.8609 -2.0482 -1.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044137949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:55 Heat of formation + Delta-G solvation = 9.868906 kcal Electronic energy + Delta-G solvation = -29049.414320 eV Core-core repulsion = 25006.188763 eV Total energy + Delta-G solvation = -4043.225557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.78234 -40.17094 -38.95422 -38.17399 -36.82132 -35.08450 -34.40160 -32.64209 -32.28606 -28.95095 -27.91644 -27.83366 -26.34981 -25.41152 -24.66128 -23.17214 -21.80047 -21.11362 -20.15385 -18.63114 -18.36401 -17.69531 -17.29332 -16.81830 -16.61058 -16.24142 -16.09976 -15.50718 -15.31701 -14.91744 -14.72168 -14.34107 -13.92552 -13.86142 -13.61656 -13.28525 -13.24123 -12.96068 -12.82314 -12.71439 -12.56068 -12.21451 -12.03723 -11.88359 -11.53195 -11.38463 -11.07694 -10.97601 -10.67389 -10.64022 -10.45334 -10.42513 -10.14094 -9.43800 -9.30637 -9.14940 -8.95350 -8.29660 -7.24060 -6.41434 -3.33059 1.30315 1.84236 2.58634 2.63717 2.74396 3.20193 3.30343 3.37034 3.56329 3.62648 4.16610 4.35239 4.49050 4.51601 4.57417 4.67926 4.94566 5.05547 5.07011 5.11043 5.22514 5.32411 5.38301 5.43629 5.51006 5.55946 5.69765 5.73650 5.82427 5.90380 5.92444 6.00573 6.13468 6.15441 6.24585 6.29463 6.53188 6.73999 6.87567 7.00154 7.05161 7.59558 7.84294 8.14296 8.22598 8.87789 9.40022 10.26837 11.10863 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.003318 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.275858 B = 8437.878569 C = 8710.968724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.577 5.577 3 C 0.494 3.506 4 O -0.536 6.536 5 C 0.134 3.866 6 N -0.598 5.598 7 C 0.708 3.292 8 O -0.538 6.538 9 N -0.679 5.679 10 C 0.538 3.462 11 O -0.468 6.468 12 C 0.119 3.881 13 C -0.146 4.146 14 C -0.140 4.140 15 C 0.098 3.902 16 C 0.111 3.889 17 N -0.625 5.625 18 C -0.305 4.305 19 H 0.083 0.917 20 C -0.022 4.022 21 N -0.932 5.932 22 Si 1.066 2.934 23 H -0.294 1.294 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.087 3.913 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.431 0.569 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.262 0.738 43 H 0.058 0.942 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.334 19.728 2.826 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.309 5.309 3 C 0.279 3.721 4 O -0.413 6.413 5 C 0.009 3.991 6 N -0.337 5.337 7 C 0.409 3.591 8 O -0.411 6.411 9 N -0.348 5.348 10 C 0.323 3.677 11 O -0.338 6.338 12 C 0.031 3.969 13 C -0.204 4.204 14 C -0.198 4.198 15 C -0.007 4.007 16 C -0.016 4.016 17 N -0.354 5.354 18 C -0.431 4.431 19 H 0.100 0.900 20 C -0.222 4.222 21 N -0.573 5.573 22 Si 0.899 3.101 23 H -0.222 1.222 24 H -0.221 1.221 25 H -0.214 1.214 26 C -0.039 4.039 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.273 0.727 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.368 19.289 1.134 21.056 hybrid contribution 0.583 0.337 1.256 1.425 sum 8.951 19.625 2.390 21.702 Atomic orbital electron populations 1.21975 0.78188 1.03690 1.02767 1.47380 1.07562 1.04647 1.71340 1.20925 0.88531 0.85470 0.77129 1.90671 1.13540 1.87150 1.49975 1.21205 0.89526 0.82064 1.06326 1.47213 1.47063 1.34195 1.05193 1.15746 0.78832 0.79275 0.85227 1.91036 1.63832 1.67509 1.18722 1.44316 1.44702 1.35391 1.10440 1.20739 0.81097 0.83576 0.82269 1.90822 1.39492 1.37164 1.66272 1.21574 0.94594 0.92413 0.88348 1.21995 0.97020 1.01477 0.99918 1.21958 1.00692 0.97864 0.99266 1.22540 0.95778 0.82906 0.99458 1.22758 0.90573 0.93361 0.94915 1.46148 1.14775 1.73422 1.01087 1.20079 0.92274 1.34554 0.96181 0.89972 1.25679 0.96447 0.95797 1.04237 1.70920 1.26080 1.39673 1.20677 0.83764 0.75067 0.75339 0.75929 1.22168 1.22072 1.21381 1.23186 0.94431 0.93807 0.92512 0.92073 0.92432 0.88228 0.86098 0.86430 0.72673 0.90083 0.89584 0.91369 0.90418 0.90372 0.90497 0.87621 0.93514 0.93489 0.92815 0.92465 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 9.34 59.85 0.56 1.68 16 2 N -0.58 -8.85 3.12 -173.55 -0.54 -9.40 16 3 C 0.49 6.98 7.34 -10.99 -0.08 6.90 16 4 O -0.54 -8.95 14.24 5.55 0.08 -8.87 16 5 C 0.13 1.38 4.88 -5.19 -0.03 1.35 16 6 N -0.60 -6.40 1.99 -166.45 -0.33 -6.73 16 7 C 0.71 8.79 8.68 -88.02 -0.76 8.03 16 8 O -0.54 -8.54 17.71 5.33 0.09 -8.44 16 9 N -0.68 -6.66 5.70 -15.79 -0.09 -6.75 16 10 C 0.54 5.40 7.48 -10.56 -0.08 5.32 16 11 O -0.47 -5.56 18.02 5.59 0.10 -5.46 16 12 C 0.12 1.07 1.14 -132.09 -0.15 0.92 16 13 C -0.15 -0.90 8.80 37.16 0.33 -0.57 16 14 C -0.14 -1.30 7.58 37.16 0.28 -1.02 16 15 C 0.10 1.68 4.69 -67.67 -0.32 1.36 16 16 C 0.11 2.05 8.31 -8.50 -0.07 1.98 16 17 N -0.63 -13.92 2.40 -184.60 -0.44 -14.37 16 18 C -0.30 -8.03 10.69 -15.06 -0.16 -8.19 16 19 H 0.08 2.31 8.05 -52.48 -0.42 1.89 16 20 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 21 N -0.93 -27.95 13.71 55.49 0.76 -27.19 16 22 Si 1.07 25.31 24.72 -169.99 -4.20 21.11 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.39 6.48 56.52 0.37 -6.03 16 25 H -0.29 -6.47 6.16 56.52 0.35 -6.12 16 26 C 0.09 1.72 4.72 -8.36 -0.04 1.68 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.64 6.44 -51.93 -0.33 0.30 16 29 H 0.10 1.86 4.85 -51.93 -0.25 1.61 16 30 H 0.12 1.19 7.29 -51.93 -0.38 0.81 16 31 H 0.12 0.83 7.32 -51.93 -0.38 0.45 16 32 H 0.43 3.28 8.96 -40.82 -0.37 2.91 16 33 H 0.08 0.40 7.43 -51.93 -0.39 0.02 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.90 7.55 -51.93 -0.39 0.51 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 39 H 0.11 1.75 7.29 -51.93 -0.38 1.37 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.26 7.76 8.73 -40.82 -0.36 7.41 16 43 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 44 H 0.06 1.15 3.88 -51.93 -0.20 0.95 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -34.37 352.71 -5.95 -40.32 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.08 Total: 1.74 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: -0.62 Total: 18.72 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.64 Total: -64.44 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.27 Total: -22.77 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.20 Total: 21.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.37 -5.95 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044137949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.185 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds