Wall clock time and date at job start Tue Mar 31 2020 04:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.46968 * 2 1 4 4 N 1.29937 * 125.38156 * 89.99337 * 3 2 1 5 5 C 1.36070 * 108.47640 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44451 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00076 * 173.51194 * 6 5 4 8 8 N 1.34778 * 120.00249 * 353.51318 * 6 5 4 9 9 C 1.46499 * 120.00015 * 3.44086 * 8 6 5 10 10 C 1.46497 * 119.99851 * 183.43375 * 8 6 5 11 11 C 1.53003 * 109.46905 * 90.00499 * 10 8 6 12 12 N 1.46901 * 109.47316 * 180.02562 * 11 10 8 13 13 C 1.46904 * 111.00187 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47232 * 179.97438 * 13 12 11 15 15 O 1.21293 * 119.99793 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00180 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00403 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99633 * 359.97438 * 17 16 14 19 19 C 1.38942 * 120.00204 * 179.97438 * 17 16 14 20 20 N 1.31419 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00261 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46977 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46947 * 119.99657 * 21 19 17 24 24 H 1.48493 * 109.47400 * 240.00199 * 21 19 17 25 25 C 1.36092 * 107.10514 * 0.02562 * 5 4 3 26 26 O 1.34052 * 125.37718 * 270.30625 * 3 2 1 27 27 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47500 * 300.00087 * 1 2 3 29 29 H 1.09004 * 109.47181 * 60.00604 * 1 2 3 30 30 H 1.08994 * 109.47390 * 239.99382 * 2 1 3 31 31 H 1.09001 * 109.46760 * 119.99136 * 2 1 3 32 32 H 1.09000 * 109.47141 * 84.08934 * 9 8 6 33 33 H 1.09000 * 109.46854 * 204.08957 * 9 8 6 34 34 H 1.09004 * 109.46903 * 324.08946 * 9 8 6 35 35 H 1.09005 * 109.47432 * 209.99993 * 10 8 6 36 36 H 1.09005 * 109.47501 * 330.00536 * 10 8 6 37 37 H 1.09002 * 109.47313 * 299.99652 * 11 10 8 38 38 H 1.08997 * 109.47254 * 59.99593 * 11 10 8 39 39 H 1.00893 * 111.00140 * 56.04489 * 12 11 10 40 40 H 1.09000 * 109.47006 * 300.00046 * 13 12 11 41 41 H 1.09001 * 109.46722 * 59.99247 * 13 12 11 42 42 H 0.97002 * 119.99440 * 359.97438 * 16 14 13 43 43 H 0.97001 * 119.99840 * 179.97438 * 20 19 17 44 44 H 1.07995 * 126.52520 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1302 1.0594 5 6 2.7164 3.3578 0.6637 6 6 3.1098 4.4732 1.5437 7 8 3.5925 5.4826 1.0672 8 7 2.9347 4.3743 2.8764 9 6 2.4238 3.1304 3.4577 10 6 3.2553 5.5106 3.7436 11 6 2.0170 6.3947 3.9044 12 7 2.3385 7.5346 4.7736 13 6 1.1705 8.4077 4.9506 14 6 1.5377 9.5626 5.8463 15 8 2.6618 9.6495 6.2936 16 7 0.6169 10.4983 6.1511 17 6 0.9511 11.5493 6.9656 18 1 1.9522 11.6271 7.3632 19 6 0.0019 12.5142 7.2794 20 7 -1.2161 12.4197 6.7951 21 14 0.4571 13.9458 8.3897 22 1 1.8793 13.8223 8.7987 23 1 0.2626 15.2223 7.6562 24 1 -0.4085 13.9313 9.5962 25 6 2.7172 3.3625 -0.6972 26 8 2.2855 2.1545 -1.0930 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.2483 2.4328 3.6054 33 1 1.9527 3.3444 4.4171 34 1 1.6903 2.6885 2.7832 35 1 3.5697 5.1445 4.7210 36 1 4.0616 6.0925 3.2970 37 1 1.7025 6.7609 2.9271 38 1 1.2107 5.8129 4.3510 39 1 3.1258 8.0529 4.4136 40 1 0.8504 8.7874 3.9803 41 1 0.3582 7.8401 5.4046 42 1 -0.2821 10.4285 5.7936 43 1 -1.8788 13.0932 7.0145 44 1 3.0071 4.1829 -1.3369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753182934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:52 Heat of formation + Delta-G solvation = -38.153330 kcal Electronic energy + Delta-G solvation = -26265.488443 eV Core-core repulsion = 22220.180486 eV Total energy + Delta-G solvation = -4045.307957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.88343 -39.94574 -38.25060 -36.40708 -35.61576 -34.84827 -34.37015 -33.76251 -31.21157 -30.23777 -29.56976 -26.96652 -26.28319 -24.90199 -24.53503 -23.41086 -22.16604 -21.47422 -19.89887 -19.18054 -17.96809 -17.82841 -17.33461 -16.93086 -16.40534 -16.22754 -15.53053 -15.31458 -15.24669 -15.01445 -14.53199 -14.29098 -14.02970 -13.77829 -13.62955 -13.41638 -13.26234 -13.08157 -13.02038 -12.71802 -12.36921 -12.21139 -12.06748 -11.80377 -11.64172 -11.48422 -11.46709 -11.10844 -10.96716 -10.81186 -10.33218 -10.31618 -10.19626 -9.49222 -9.47036 -8.86211 -8.42177 -8.04813 -7.93006 -6.38971 -3.79679 0.71707 1.57956 2.12322 2.65657 2.98846 3.18695 3.28954 3.35965 3.36934 3.94211 4.12654 4.20904 4.29763 4.47948 4.52777 4.56937 4.74055 4.96838 5.12199 5.12447 5.14087 5.16307 5.20050 5.22169 5.29646 5.35784 5.38167 5.51483 5.54854 5.60957 5.77428 5.87596 5.91078 5.98975 6.02913 6.26945 6.35737 6.98264 7.16201 7.20954 7.58264 7.67234 7.86509 8.09553 8.64333 9.20821 9.57399 10.08907 10.78932 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.001787 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.116229 B =15660.929003 C =15897.429863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C 0.196 3.804 4 N -0.455 5.455 5 C -0.068 4.068 6 C 0.597 3.403 7 O -0.534 6.534 8 N -0.596 5.596 9 C 0.074 3.926 10 C 0.116 3.884 11 C 0.047 3.953 12 N -0.666 5.666 13 C 0.052 3.948 14 C 0.442 3.558 15 O -0.582 6.582 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.013 3.987 26 O -0.195 6.195 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.351 0.649 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -27.553 -16.345 32.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.013 4.013 4 N -0.186 5.186 5 C -0.187 4.187 6 C 0.384 3.616 7 O -0.411 6.411 8 N -0.328 5.328 9 C -0.069 4.069 10 C -0.007 4.007 11 C -0.084 4.084 12 N -0.299 5.299 13 C -0.081 4.081 14 C 0.227 3.773 15 O -0.466 6.466 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.181 4.181 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.060 4.060 26 O -0.081 6.081 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.170 0.830 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.589 -27.395 -15.046 31.362 hybrid contribution -0.488 1.449 -1.170 1.925 sum 2.102 -25.946 -16.216 30.668 Atomic orbital electron populations 1.21804 0.92796 1.03260 1.03166 1.20142 0.97049 0.83861 1.05514 1.26552 0.99326 0.96938 0.78490 1.70971 1.16051 1.02644 1.28913 1.21769 1.09646 0.94321 0.93004 1.16844 0.78362 0.84642 0.81735 1.90848 1.44859 1.30479 1.74946 1.47603 1.64133 1.15419 1.05639 1.22229 1.00345 0.84674 0.99657 1.21502 0.97751 0.86969 0.94430 1.22257 0.97754 0.93235 0.95180 1.60018 1.07573 1.11031 1.51290 1.21658 0.93657 0.94177 0.98560 1.19794 0.86488 0.84774 0.86210 1.90522 1.21310 1.77695 1.57106 1.41867 1.12370 1.21765 1.44128 1.19765 0.98913 1.00153 1.23929 0.87831 1.25270 0.94963 0.99338 0.98486 1.69628 1.03224 1.36326 1.45215 0.85788 0.78836 0.80318 0.79327 1.19205 1.20798 1.20762 1.25302 0.98439 0.86629 0.95668 1.84394 1.63209 1.22566 1.37964 0.90667 0.91560 0.92068 0.88669 0.87301 0.92575 0.91298 0.88174 0.88956 0.89503 0.95203 0.91009 0.82950 0.93815 0.89606 0.77461 0.91958 0.75278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.89 37.16 0.37 -0.11 16 2 C -0.03 -0.10 6.56 -27.88 -0.18 -0.28 16 3 C 0.20 1.44 7.56 -13.08 -0.10 1.35 16 4 N -0.46 -4.27 7.86 -7.65 -0.06 -4.33 16 5 C -0.07 -0.73 6.66 -83.02 -0.55 -1.29 16 6 C 0.60 7.82 7.67 -12.52 -0.10 7.72 16 7 O -0.53 -8.46 16.45 5.26 0.09 -8.37 16 8 N -0.60 -7.04 2.87 -182.84 -0.53 -7.56 16 9 C 0.07 0.68 9.61 59.85 0.58 1.25 16 10 C 0.12 1.46 5.67 -4.04 -0.02 1.43 16 11 C 0.05 0.65 6.01 -3.82 -0.02 0.62 16 12 N -0.67 -11.47 6.13 -115.05 -0.70 -12.17 16 13 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 14 C 0.44 10.80 7.82 -10.99 -0.09 10.72 16 15 O -0.58 -16.26 15.78 5.55 0.09 -16.17 16 16 N -0.56 -14.71 5.29 -10.97 -0.06 -14.77 16 17 C -0.30 -8.50 9.68 -14.94 -0.14 -8.64 16 18 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 21 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.01 0.12 11.95 29.96 0.36 0.47 16 26 O -0.20 -1.56 10.73 6.50 0.07 -1.49 16 27 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.56 8.03 -51.93 -0.42 0.15 16 34 H 0.10 0.93 5.30 -51.93 -0.28 0.66 16 35 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 36 H 0.09 1.20 7.38 -51.93 -0.38 0.81 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.35 6.29 8.43 -39.30 -0.33 5.96 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.23 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -35.03 379.83 -6.02 -41.05 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.31 Total: 11.31 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -0.03 Total: 14.67 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.62 Total: -63.09 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: 0.24 Total: -26.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.03 -6.02 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753182934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.895 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds