Wall clock time and date at job start Tue Mar 31 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.46968 * 2 1 4 4 N 1.29937 * 125.38156 * 89.99337 * 3 2 1 5 5 C 1.36070 * 108.47640 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44451 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00076 * 173.51194 * 6 5 4 8 8 N 1.34778 * 120.00249 * 353.51318 * 6 5 4 9 9 C 1.46499 * 120.00015 * 3.44086 * 8 6 5 10 10 C 1.46497 * 119.99851 * 183.43375 * 8 6 5 11 11 C 1.53003 * 109.46905 * 90.00499 * 10 8 6 12 12 N 1.46901 * 109.47316 * 180.02562 * 11 10 8 13 13 C 1.46904 * 111.00187 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47232 * 179.97438 * 13 12 11 15 15 O 1.21293 * 119.99793 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00180 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00403 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99633 * 359.97438 * 17 16 14 19 19 C 1.38942 * 120.00204 * 179.97438 * 17 16 14 20 20 N 1.31419 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00261 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46977 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46947 * 119.99657 * 21 19 17 24 24 H 1.48493 * 109.47400 * 240.00199 * 21 19 17 25 25 C 1.36092 * 107.10514 * 0.02562 * 5 4 3 26 26 O 1.34052 * 125.37718 * 270.30625 * 3 2 1 27 27 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47500 * 300.00087 * 1 2 3 29 29 H 1.09004 * 109.47181 * 60.00604 * 1 2 3 30 30 H 1.08994 * 109.47390 * 239.99382 * 2 1 3 31 31 H 1.09001 * 109.46760 * 119.99136 * 2 1 3 32 32 H 1.09000 * 109.47141 * 84.08934 * 9 8 6 33 33 H 1.09000 * 109.46854 * 204.08957 * 9 8 6 34 34 H 1.09004 * 109.46903 * 324.08946 * 9 8 6 35 35 H 1.09005 * 109.47432 * 209.99993 * 10 8 6 36 36 H 1.09005 * 109.47501 * 330.00536 * 10 8 6 37 37 H 1.09002 * 109.47313 * 299.99652 * 11 10 8 38 38 H 1.08997 * 109.47254 * 59.99593 * 11 10 8 39 39 H 1.00893 * 111.00140 * 56.04489 * 12 11 10 40 40 H 1.09000 * 109.47006 * 300.00046 * 13 12 11 41 41 H 1.09001 * 109.46722 * 59.99247 * 13 12 11 42 42 H 0.97002 * 119.99440 * 359.97438 * 16 14 13 43 43 H 0.97001 * 119.99840 * 179.97438 * 20 19 17 44 44 H 1.07995 * 126.52520 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1302 1.0594 5 6 2.7164 3.3578 0.6637 6 6 3.1098 4.4732 1.5437 7 8 3.5925 5.4826 1.0672 8 7 2.9347 4.3743 2.8764 9 6 2.4238 3.1304 3.4577 10 6 3.2553 5.5106 3.7436 11 6 2.0170 6.3947 3.9044 12 7 2.3385 7.5346 4.7736 13 6 1.1705 8.4077 4.9506 14 6 1.5377 9.5626 5.8463 15 8 2.6618 9.6495 6.2936 16 7 0.6169 10.4983 6.1511 17 6 0.9511 11.5493 6.9656 18 1 1.9522 11.6271 7.3632 19 6 0.0019 12.5142 7.2794 20 7 -1.2161 12.4197 6.7951 21 14 0.4571 13.9458 8.3897 22 1 1.8793 13.8223 8.7987 23 1 0.2626 15.2223 7.6562 24 1 -0.4085 13.9313 9.5962 25 6 2.7172 3.3625 -0.6972 26 8 2.2855 2.1545 -1.0930 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.2483 2.4328 3.6054 33 1 1.9527 3.3444 4.4171 34 1 1.6903 2.6885 2.7832 35 1 3.5697 5.1445 4.7210 36 1 4.0616 6.0925 3.2970 37 1 1.7025 6.7609 2.9271 38 1 1.2107 5.8129 4.3510 39 1 3.1258 8.0529 4.4136 40 1 0.8504 8.7874 3.9803 41 1 0.3582 7.8401 5.4046 42 1 -0.2821 10.4285 5.7936 43 1 -1.8788 13.0932 7.0145 44 1 3.0071 4.1829 -1.3369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753182934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:51 Heat of formation + Delta-G solvation = -66.023443 kcal Electronic energy + Delta-G solvation = -26266.696982 eV Core-core repulsion = 22220.180486 eV Total energy + Delta-G solvation = -4046.516496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.52427 -40.93045 -40.16655 -37.60030 -36.49162 -36.02056 -35.61185 -34.82565 -33.29363 -31.24602 -30.40308 -28.14952 -27.52995 -26.11318 -25.27195 -24.60309 -23.14251 -22.14930 -21.17074 -20.61216 -19.92647 -18.75033 -18.06768 -17.85696 -17.68733 -17.30122 -17.08913 -16.52816 -16.28966 -15.99674 -15.72055 -15.51053 -15.29597 -15.04334 -14.88220 -14.50246 -14.19174 -14.04205 -13.88835 -13.56608 -13.55334 -13.44265 -13.33646 -12.97895 -12.80250 -12.61148 -12.41898 -12.32910 -12.15056 -12.11478 -12.02135 -11.65115 -11.52997 -11.20576 -10.41620 -10.17890 -10.03574 -9.74424 -9.46827 -8.48152 -5.97262 0.00539 0.89964 1.36200 1.41495 1.52544 1.56234 1.77590 2.01938 2.10362 2.28873 2.73850 2.95577 3.18636 3.44180 3.56714 3.74165 3.93907 4.05609 4.22499 4.26403 4.27736 4.35133 4.37819 4.43639 4.44904 4.53674 4.55730 4.56520 4.72445 4.75565 4.89634 4.94299 5.01674 5.06401 5.22459 5.36809 5.39923 5.44972 5.79814 6.03431 6.14486 6.25735 6.43697 6.57693 6.91145 7.10547 7.53245 8.08320 8.69534 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.001787 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.116229 B =15660.929003 C =15897.429863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C 0.201 3.799 4 N -0.470 5.470 5 C -0.097 4.097 6 C 0.592 3.408 7 O -0.573 6.573 8 N -0.595 5.595 9 C 0.076 3.924 10 C 0.122 3.878 11 C 0.057 3.943 12 N -0.675 5.675 13 C 0.066 3.934 14 C 0.438 3.562 15 O -0.622 6.622 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.996 3.004 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.269 1.269 25 C 0.025 3.975 26 O -0.195 6.195 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.086 0.914 39 H 0.345 0.655 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -29.151 -16.761 33.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.008 4.008 4 N -0.201 5.201 5 C -0.215 4.215 6 C 0.380 3.620 7 O -0.453 6.453 8 N -0.326 5.326 9 C -0.066 4.066 10 C -0.001 4.001 11 C -0.073 4.073 12 N -0.307 5.307 13 C -0.067 4.067 14 C 0.225 3.775 15 O -0.508 6.508 16 N -0.209 5.209 17 C -0.464 4.464 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.561 5.561 21 Si 0.819 3.181 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.050 4.050 26 O -0.081 6.081 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.163 0.837 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.592 -29.036 -15.457 32.933 hybrid contribution -0.207 1.841 -1.090 2.150 sum 1.385 -27.195 -16.546 31.863 Atomic orbital electron populations 1.21793 0.92431 1.04294 1.02221 1.20422 0.97157 0.81636 1.07216 1.27409 0.97696 0.97848 0.77809 1.70922 1.17037 1.02308 1.29783 1.21593 1.11848 0.94604 0.93504 1.17194 0.77758 0.84799 0.82226 1.90815 1.46718 1.32086 1.75659 1.47693 1.63692 1.15829 1.05366 1.22332 1.00595 0.83615 1.00062 1.21370 0.96652 0.87120 0.94995 1.22231 0.98737 0.92217 0.94159 1.60032 1.06869 1.11342 1.52459 1.21531 0.94632 0.92452 0.98047 1.20780 0.85539 0.85371 0.85761 1.90491 1.22938 1.78756 1.58625 1.41927 1.12874 1.21887 1.44249 1.19730 0.98534 1.02170 1.25983 0.90233 1.26081 0.94699 1.01268 0.99322 1.69686 1.03767 1.37174 1.45508 0.84834 0.78275 0.77212 0.77777 1.19780 1.19590 1.19464 1.25676 0.96904 0.87117 0.95277 1.84434 1.63120 1.22350 1.38199 0.88648 0.92850 0.92649 0.86495 0.86027 0.91962 0.89986 0.88064 0.87707 0.91121 0.96040 0.89527 0.83698 0.92033 0.87374 0.76951 0.91253 0.73441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 71.98 0.71 0.08 16 2 C -0.03 -0.12 6.56 29.85 0.20 0.08 16 3 C 0.20 2.65 7.56 88.39 0.67 3.32 16 4 N -0.47 -8.32 7.86 -293.03 -2.30 -10.63 16 5 C -0.10 -2.06 6.66 40.41 0.27 -1.79 16 6 C 0.59 15.59 7.67 86.66 0.66 16.25 16 7 O -0.57 -18.63 16.45 -4.08 -0.07 -18.70 16 8 N -0.60 -13.76 2.87 -850.65 -2.44 -16.20 16 9 C 0.08 1.29 9.61 127.77 1.23 2.52 16 10 C 0.12 3.01 5.67 86.38 0.49 3.50 16 11 C 0.06 1.53 6.01 86.30 0.52 2.04 16 12 N -0.67 -22.86 6.13 -517.92 -3.17 -26.03 16 13 C 0.07 2.40 6.17 85.56 0.53 2.93 16 14 C 0.44 21.63 7.82 87.66 0.69 22.32 16 15 O -0.62 -35.53 15.78 -3.07 -0.05 -35.58 16 16 N -0.57 -30.22 5.29 -307.00 -1.62 -31.84 16 17 C -0.33 -19.44 9.68 84.04 0.81 -18.62 16 18 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.76 5.50 84.92 0.47 -0.30 16 20 N -0.92 -50.41 13.05 21.66 0.28 -50.12 16 21 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 C 0.02 0.40 11.95 67.32 0.80 1.21 16 26 O -0.19 -2.83 10.73 0.35 0.00 -2.83 16 27 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.18 8.03 -2.39 -0.02 1.16 16 34 H 0.10 1.77 5.30 -2.38 -0.01 1.75 16 35 H 0.10 2.32 8.07 -2.38 -0.02 2.30 16 36 H 0.07 1.99 7.38 -2.38 -0.02 1.98 16 37 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.34 12.48 8.43 -89.70 -0.76 11.73 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 43 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.25 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -76.31 379.83 0.25 -76.05 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.45 Total: 36.70 kcal Atomic # 6 Polarization: 25.50 SS G_CDS: 8.04 Total: 33.54 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -9.26 Total: -134.83 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -0.11 Total: -57.10 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -76.31 0.25 -76.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753182934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.028 kcal (2) G-P(sol) polarization free energy of solvation -76.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds