Wall clock time and date at job start Tue Mar 31 2020 04:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47335 * 2 1 4 4 C 1.46912 * 110.99815 * 292.57617 * 3 2 1 5 5 C 1.50698 * 109.46754 * 286.56701 * 4 3 2 6 6 H 1.08001 * 120.00390 * 1.44910 * 5 4 3 7 7 C 1.37879 * 119.99429 * 181.45386 * 5 4 3 8 8 N 1.31514 * 120.00482 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47160 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47029 * 120.00028 * 9 7 5 12 12 H 1.48507 * 109.46834 * 240.00097 * 9 7 5 13 13 C 1.46891 * 111.00253 * 56.52739 * 3 2 1 14 14 C 1.50704 * 109.47004 * 66.05226 * 13 3 2 15 15 O 1.21414 * 119.99756 * 359.97438 * 14 13 3 16 16 C 1.41505 * 120.00160 * 180.02562 * 14 13 3 17 17 C 1.40598 * 120.85538 * 184.91739 * 16 14 13 18 18 N 1.36257 * 120.70234 * 359.97438 * 17 16 14 19 19 N 1.36281 * 118.60535 * 179.72114 * 17 16 14 20 20 C 1.46494 * 119.82222 * 180.24581 * 19 17 16 21 21 C 1.53004 * 109.47085 * 270.31055 * 20 19 17 22 22 C 1.34456 * 120.36080 * 0.55723 * 19 17 16 23 23 O 1.21889 * 119.06683 * 179.72966 * 22 19 17 24 24 N 1.33190 * 121.86689 * 359.71286 * 22 19 17 25 25 C 1.32309 * 121.39977 * 359.97438 * 24 22 19 26 26 O 1.35030 * 120.25847 * 179.97438 * 25 24 22 27 27 H 1.08997 * 109.46876 * 298.93760 * 1 2 3 28 28 H 1.09001 * 109.46709 * 58.93707 * 1 2 3 29 29 H 1.09001 * 109.46948 * 178.94249 * 1 2 3 30 30 H 1.09003 * 109.47337 * 239.99274 * 2 1 3 31 31 H 1.09004 * 109.46990 * 119.99823 * 2 1 3 32 32 H 1.08996 * 109.46683 * 46.56493 * 4 3 2 33 33 H 1.08999 * 109.46762 * 166.56425 * 4 3 2 34 34 H 0.96996 * 120.00373 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47293 * 186.04778 * 13 3 2 36 36 H 1.08999 * 109.47491 * 306.04913 * 13 3 2 37 37 H 0.97005 * 119.99617 * 338.22302 * 18 17 16 38 38 H 0.96996 * 120.00714 * 158.22309 * 18 17 16 39 39 H 1.09000 * 109.47023 * 30.30658 * 20 19 17 40 40 H 1.09001 * 109.47305 * 150.31112 * 20 19 17 41 41 H 1.09001 * 109.47003 * 59.99872 * 21 20 19 42 42 H 1.09002 * 109.46816 * 179.97438 * 21 20 19 43 43 H 1.09000 * 109.47347 * 299.99922 * 21 20 19 44 44 H 0.96703 * 113.99958 * 0.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6988 2.0568 -1.2665 5 6 2.5960 1.5293 -2.3563 6 1 3.3151 0.7542 -2.1359 7 6 2.4989 2.0363 -3.6348 8 7 1.6230 2.9799 -3.9033 9 14 3.6115 1.3829 -4.9856 10 1 4.5020 0.3331 -4.4289 11 1 2.7823 0.8039 -6.0730 12 1 4.4351 2.4930 -5.5287 13 6 1.4822 2.1334 1.1439 14 6 2.0326 1.5587 2.4237 15 8 2.7979 0.6168 2.3864 16 6 1.6567 2.1160 3.6688 17 6 2.2368 1.6623 4.8665 18 7 3.1748 0.6741 4.8545 19 7 1.8451 2.2354 6.0393 20 6 2.4361 1.7869 7.3024 21 6 1.6054 0.6361 7.8741 22 6 0.9145 3.2058 6.0440 23 8 0.5780 3.6985 7.1069 24 7 0.3501 3.6443 4.9201 25 6 0.6812 3.1429 3.7413 26 8 0.0940 3.6043 2.6163 27 1 -0.3633 0.4972 0.8993 28 1 -0.3633 0.5303 -0.8803 29 1 -0.3633 -1.0275 -0.0190 30 1 1.8934 -0.5140 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.6583 1.8631 -1.5269 33 1 1.8523 3.1304 -1.1572 34 1 1.5544 3.3363 -4.8028 35 1 1.7726 3.1809 1.0616 36 1 0.3949 2.0572 1.1494 37 1 3.2282 0.0652 4.1012 38 1 3.7891 0.5793 5.5992 39 1 3.4561 1.4456 7.1254 40 1 2.4477 2.6141 8.0121 41 1 1.5937 -0.1911 7.1644 42 1 2.0454 0.3022 8.8137 43 1 0.5854 0.9773 8.0511 44 1 -0.5569 4.3027 2.7705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348525310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:02 Heat of formation + Delta-G solvation = -43.538584 kcal Electronic energy + Delta-G solvation = -28611.811063 eV Core-core repulsion = 24566.269583 eV Total energy + Delta-G solvation = -4045.541479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26852 -39.72030 -38.85833 -37.71045 -36.40897 -35.25863 -34.38961 -32.55108 -31.38295 -31.05636 -29.50218 -27.97170 -25.51520 -25.04363 -23.94726 -23.14018 -22.97229 -20.70208 -20.19197 -19.21841 -18.98437 -17.88037 -17.01972 -16.73504 -16.19308 -15.88076 -15.67011 -15.42489 -15.13103 -14.64221 -14.59555 -14.58012 -14.27187 -14.06649 -13.79925 -13.63467 -13.25406 -12.81869 -12.66625 -12.54121 -12.28486 -11.83735 -11.72659 -11.42357 -11.10738 -11.01113 -10.82233 -10.70406 -10.50672 -10.35027 -10.25432 -10.11301 -10.00609 -9.86979 -9.31766 -8.95376 -8.51424 -8.37781 -7.09113 -5.97600 -3.97500 0.62337 1.03576 1.79026 2.74985 2.79886 3.23986 3.34050 3.41508 3.47049 3.63202 3.89916 4.24314 4.41349 4.46765 4.51241 4.58394 4.78609 4.89922 5.05703 5.22131 5.26672 5.38452 5.41329 5.59452 5.78449 5.79581 5.86666 5.92769 6.08717 6.16532 6.22237 6.43596 6.51089 6.68957 6.91552 6.96887 7.01074 7.32022 7.45739 7.61861 7.85712 7.92724 8.00555 8.17823 8.29416 8.61113 9.10924 9.66075 11.13018 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.003065 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.780497 B = 9134.288045 C = 9651.043035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 N -0.522 5.522 4 C 0.189 3.811 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.020 3.980 14 C 0.430 3.570 15 O -0.479 6.479 16 C -0.408 4.408 17 C 0.559 3.441 18 N -0.802 5.802 19 N -0.548 5.548 20 C 0.087 3.913 21 C -0.169 4.169 22 C 0.678 3.322 23 O -0.530 6.530 24 N -0.643 5.643 25 C 0.508 3.492 26 O -0.428 6.428 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.000 1.000 33 H 0.028 0.972 34 H 0.259 0.741 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.440 0.560 38 H 0.406 0.594 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -4.600 21.831 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.075 4.075 3 N -0.245 5.245 4 C 0.064 3.936 5 C -0.538 4.538 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.109 4.109 14 C 0.313 3.687 15 O -0.358 6.358 16 C -0.423 4.423 17 C 0.325 3.675 18 N -0.356 5.356 19 N -0.273 5.273 20 C -0.035 4.035 21 C -0.227 4.227 22 C 0.380 3.620 23 O -0.405 6.405 24 N -0.404 5.404 25 C 0.310 3.690 26 O -0.222 6.222 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.017 0.983 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.287 0.713 38 H 0.238 0.762 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 0.693 -4.439 22.232 22.682 hybrid contribution -0.001 -0.453 -0.787 0.909 sum 0.692 -4.893 21.445 22.007 Atomic orbital electron populations 1.22443 1.00021 1.00990 1.01538 1.22127 0.91266 0.91637 1.02437 1.62217 1.57866 1.01523 1.02912 1.19810 0.95325 0.94168 0.84270 1.21210 1.19162 1.20726 0.92705 0.91840 1.24974 0.95817 0.95270 0.98671 1.69961 1.35564 1.27875 1.20677 0.86477 0.80585 0.78805 0.81765 1.19679 1.21228 1.21134 1.22328 0.98802 0.99489 0.90255 1.20442 0.78059 0.81447 0.88772 1.90160 1.31213 1.26027 1.88413 1.18587 1.16178 1.13642 0.93903 1.18082 0.82998 0.81398 0.85027 1.43147 1.32354 1.31553 1.28530 1.46936 1.37877 1.36009 1.06528 1.21917 0.96826 1.00239 0.84563 1.22129 1.01673 0.97183 1.01718 1.17248 0.77777 0.77963 0.89050 1.90957 1.62633 1.57687 1.29176 1.69487 1.36965 1.36777 0.97150 1.19957 0.81683 0.82478 0.84919 1.85256 1.55108 1.55048 1.26835 0.93808 0.91711 0.93395 0.90386 0.91326 0.98278 0.95412 0.93100 0.88049 0.91074 0.71258 0.76186 0.89683 0.87070 0.92067 0.90111 0.91132 0.72719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.23 37.16 0.34 -2.98 16 2 C 0.05 1.05 5.59 -3.82 -0.02 1.03 16 3 N -0.52 -11.10 4.38 -237.51 -1.04 -12.14 16 4 C 0.19 4.80 4.64 -4.97 -0.02 4.77 16 5 C -0.50 -13.96 8.55 -34.44 -0.29 -14.25 16 6 H 0.06 1.79 7.59 -52.49 -0.40 1.39 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.02 0.34 3.27 -4.98 -0.02 0.33 16 14 C 0.43 6.47 6.66 -33.06 -0.22 6.25 16 15 O -0.48 -7.59 11.67 5.44 0.06 -7.53 16 16 C -0.41 -5.15 5.78 -106.39 -0.61 -5.76 16 17 C 0.56 5.64 7.53 -153.63 -1.16 4.49 16 18 N -0.80 -5.74 8.37 31.59 0.26 -5.48 16 19 N -0.55 -5.54 2.59 -120.61 -0.31 -5.85 16 20 C 0.09 0.56 5.76 -4.04 -0.02 0.54 16 21 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 22 C 0.68 9.50 8.32 -88.61 -0.74 8.76 16 23 O -0.53 -8.78 16.66 5.02 0.08 -8.69 16 24 N -0.64 -8.96 10.34 -16.55 -0.17 -9.13 16 25 C 0.51 6.33 7.89 -15.98 -0.13 6.20 16 26 O -0.43 -4.59 9.70 -16.80 -0.16 -4.75 16 27 H 0.04 0.69 6.28 -51.93 -0.33 0.37 16 28 H 0.06 1.26 6.32 -51.93 -0.33 0.94 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.67 7.23 -51.93 -0.38 1.29 16 31 H 0.07 1.26 5.95 -51.93 -0.31 0.95 16 32 H 0.00 -0.01 6.05 -51.93 -0.31 -0.33 16 33 H 0.03 0.75 7.78 -51.93 -0.40 0.35 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.10 1.77 7.29 -51.92 -0.38 1.39 16 36 H 0.07 1.18 4.74 -51.93 -0.25 0.93 16 37 H 0.44 3.82 5.82 -40.82 -0.24 3.59 16 38 H 0.41 1.50 6.85 -40.82 -0.28 1.22 16 39 H 0.08 0.26 6.28 -51.93 -0.33 -0.06 16 40 H 0.11 0.80 7.36 -51.93 -0.38 0.42 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.41 2.73 8.98 45.56 0.41 3.14 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -35.89 352.17 -7.58 -43.47 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.72 Total: 3.69 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -2.61 Total: 10.20 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.52 Total: -58.36 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.02 Total: -20.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.89 -7.58 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348525310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.067 kcal (2) G-P(sol) polarization free energy of solvation -35.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds