Wall clock time and date at job start Tue Mar 31 2020 05:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35998 * 117.00217 * 2 1 4 4 C 1.38567 * 120.07291 * 0.02823 * 3 2 1 5 5 C 1.38239 * 119.99955 * 179.70452 * 4 3 2 6 6 C 1.38254 * 120.14717 * 0.54292 * 5 4 3 7 7 C 1.50692 * 119.92710 * 179.72624 * 6 5 4 8 8 N 1.46898 * 109.47322 * 269.72444 * 7 6 5 9 9 C 1.46900 * 110.99985 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46945 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47076 * 60.00021 * 10 9 8 12 12 O 1.42901 * 109.46988 * 300.00078 * 10 9 8 13 13 C 1.53001 * 109.47020 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47094 * 180.46532 * 13 10 9 15 15 C 1.46897 * 111.00257 * 199.84917 * 14 13 10 16 16 C 1.46903 * 111.00263 * 75.89387 * 14 13 10 17 17 C 1.50698 * 109.47127 * 190.00388 * 16 14 13 18 18 H 1.08006 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00036 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47270 * 60.00048 * 21 19 17 23 23 H 1.48501 * 109.47309 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47503 * 300.00099 * 21 19 17 25 25 C 1.38248 * 120.14295 * 359.44939 * 6 5 4 26 26 C 1.38562 * 119.99965 * 0.27749 * 25 6 5 27 27 O 1.35996 * 120.07405 * 179.97438 * 26 25 6 28 28 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47105 * 300.00070 * 1 2 3 30 30 H 1.08998 * 109.47055 * 59.99572 * 1 2 3 31 31 H 1.08010 * 119.99696 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.92769 * 180.28915 * 5 4 3 33 33 H 1.09001 * 109.47271 * 149.72423 * 7 6 5 34 34 H 1.09003 * 109.47521 * 29.73108 * 7 6 5 35 35 H 1.00903 * 110.99864 * 56.04502 * 8 7 6 36 36 H 1.08998 * 109.47445 * 299.99997 * 9 8 7 37 37 H 1.09001 * 109.47216 * 60.00183 * 9 8 7 38 38 H 0.96701 * 114.00160 * 299.99950 * 12 10 9 39 39 H 1.09001 * 109.47110 * 300.46064 * 13 10 9 40 40 H 1.08994 * 109.47309 * 60.45921 * 13 10 9 41 41 H 1.08998 * 109.47057 * 64.81426 * 15 14 13 42 42 H 1.08998 * 109.47318 * 184.81746 * 15 14 13 43 43 H 1.09005 * 109.46716 * 304.82181 * 15 14 13 44 44 H 1.09007 * 109.46775 * 310.00046 * 16 14 13 45 45 H 1.08996 * 109.47473 * 69.99941 * 16 14 13 46 46 H 0.96999 * 119.99906 * 179.97438 * 20 19 17 47 47 H 1.07999 * 119.99692 * 180.25021 * 25 6 5 48 48 H 0.96706 * 113.99339 * 89.99831 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0006 5 6 1.9225 3.6057 0.0068 6 6 3.3030 3.6798 0.0010 7 6 3.9837 5.0243 0.0016 8 7 4.2049 5.4617 -1.3832 9 6 4.8688 6.7716 -1.4218 10 6 5.0811 7.1930 -2.8773 11 1 4.1166 7.2595 -3.3807 12 8 5.8981 6.2251 -3.5391 13 6 5.7732 8.5569 -2.9175 14 7 5.9670 8.9666 -4.3149 15 6 7.0103 9.9952 -4.4221 16 6 4.7058 9.4325 -4.9068 17 6 4.8834 9.6094 -6.3927 18 1 5.8379 9.3975 -6.8515 19 6 3.8274 10.0419 -7.1666 20 7 2.6650 10.2995 -6.6080 21 14 4.0478 10.2620 -9.0084 22 1 4.4325 8.9644 -9.6195 23 1 2.7728 10.7328 -9.6068 24 1 5.1134 11.2644 -9.2632 25 6 4.0604 2.5233 0.0006 26 6 3.4360 1.2863 0.0001 27 8 4.1795 0.1476 -0.0009 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2146 2.3197 0.0006 32 1 1.3343 4.5115 0.0119 33 1 4.9419 4.9462 0.5154 34 1 3.3539 5.7503 0.5158 35 1 3.3382 5.4799 -1.8995 36 1 4.2455 7.5099 -0.9175 37 1 5.8331 6.7052 -0.9181 38 1 6.7735 6.1131 -3.1438 39 1 5.1542 9.2937 -2.4055 40 1 6.7412 8.4880 -2.4214 41 1 7.9689 9.5731 -4.1205 42 1 7.0742 10.3418 -5.4535 43 1 6.7619 10.8338 -3.7715 44 1 3.9231 8.6972 -4.7194 45 1 4.4240 10.3852 -4.4585 46 1 1.9222 10.6041 -7.1523 47 1 5.1386 2.5839 0.0002 48 1 4.3948 -0.1822 0.8823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581483607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:15 Heat of formation + Delta-G solvation = -95.004435 kcal Electronic energy + Delta-G solvation = -26840.704328 eV Core-core repulsion = 22896.471466 eV Total energy + Delta-G solvation = -3944.232863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67461 -38.43110 -37.98248 -37.17015 -35.74078 -34.64846 -32.45323 -31.26337 -30.30130 -29.31755 -27.82132 -27.24934 -26.01809 -24.32236 -23.10347 -22.85968 -21.60470 -21.29698 -19.99351 -18.74976 -17.82142 -16.92446 -16.49260 -16.39257 -16.11109 -15.49455 -15.40382 -14.95013 -14.80603 -14.69388 -14.60497 -14.25340 -14.20264 -13.92000 -13.48411 -13.22436 -12.98651 -12.63140 -12.42838 -12.28842 -11.94322 -11.88313 -11.67959 -11.51356 -11.37438 -11.29025 -11.09686 -10.86205 -10.78747 -10.67462 -10.60289 -10.31539 -9.73194 -9.47110 -9.11266 -9.07684 -8.50093 -8.39201 -8.24077 -7.16630 -5.99324 -3.99478 0.96974 1.06576 2.92063 3.30428 3.37041 3.40448 3.44590 3.90095 4.17875 4.46648 4.49629 4.58718 4.70638 4.80143 4.84209 4.90856 5.00560 5.05865 5.10751 5.18495 5.30859 5.34194 5.36215 5.44518 5.50436 5.65836 5.66750 5.74286 5.76809 5.91319 5.96016 6.06068 6.16435 6.31605 6.34447 6.41710 6.52682 6.75239 6.90170 6.94429 7.30259 7.32858 7.34169 7.50644 7.83758 8.12048 8.21813 8.32238 8.59500 9.07571 9.64206 11.11831 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.002156 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.899324 B =12983.604202 C =13961.536925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.101 3.899 4 C -0.195 4.195 5 C -0.080 4.080 6 C -0.100 4.100 7 C 0.102 3.898 8 N -0.674 5.674 9 C 0.027 3.973 10 C 0.119 3.881 11 H 0.099 0.901 12 O -0.529 6.529 13 C 0.026 3.974 14 N -0.530 5.530 15 C 0.038 3.962 16 C 0.193 3.807 17 C -0.504 4.504 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.901 5.901 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.081 4.081 26 C 0.072 3.928 27 O -0.485 6.485 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.346 0.654 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.361 0.639 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.007 0.993 44 H 0.030 0.970 45 H -0.013 1.013 46 H 0.261 0.739 47 H 0.138 0.862 48 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -16.037 20.755 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.055 3.945 4 C -0.214 4.214 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.027 4.027 8 N -0.305 5.305 9 C -0.103 4.103 10 C 0.058 3.942 11 H 0.116 0.884 12 O -0.332 6.332 13 C -0.104 4.104 14 N -0.254 5.254 15 C -0.111 4.111 16 C 0.068 3.932 17 C -0.542 4.542 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.541 5.541 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.100 4.100 26 C 0.027 3.973 27 O -0.294 6.294 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.164 0.836 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.205 0.795 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.025 0.975 44 H 0.048 0.952 45 H 0.005 0.995 46 H 0.070 0.930 47 H 0.156 0.844 48 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.332 -16.916 19.368 25.750 hybrid contribution -0.900 1.692 0.649 2.023 sum -2.233 -15.225 20.016 25.247 Atomic orbital electron populations 1.23088 0.78487 1.04011 1.01411 1.86141 1.21213 1.26333 1.88631 1.19484 0.91802 0.84868 0.98394 1.21117 1.00082 0.91826 1.08347 1.20901 0.94007 0.97197 0.97806 1.19578 0.93038 0.94889 1.02592 1.20827 0.99386 0.91741 0.90746 1.60392 1.29983 1.28432 1.11685 1.22743 0.99305 0.89358 0.98847 1.21845 0.95571 0.87077 0.89661 0.88364 1.86692 1.28673 1.60271 1.57528 1.22673 0.99124 0.96440 0.92129 1.62008 1.10798 1.39556 1.13079 1.22226 0.93971 0.92653 1.02231 1.19754 0.85307 0.93452 0.94676 1.21128 0.97534 1.43486 0.92076 0.91886 1.24986 0.95160 0.95696 0.98853 1.69946 1.01852 1.46496 1.35834 0.86552 0.77113 0.78573 0.85132 1.20076 1.21418 1.20340 1.21135 1.00693 0.90063 0.98145 1.17732 0.86079 0.86639 1.06882 1.84932 1.71783 1.39660 1.33032 0.88182 0.92709 0.92472 0.85048 0.85566 0.90268 0.94485 0.83573 0.94638 0.90925 0.79453 0.95198 0.92170 0.93729 0.90475 0.97483 0.95207 0.99489 0.92959 0.84448 0.76163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.24 10.28 -34.24 -0.35 -3.59 16 3 C 0.10 1.10 6.70 -39.12 -0.26 0.83 16 4 C -0.19 -1.85 9.04 -39.46 -0.36 -2.21 16 5 C -0.08 -0.77 9.69 -39.58 -0.38 -1.15 16 6 C -0.10 -1.02 5.39 -104.62 -0.56 -1.59 16 7 C 0.10 0.99 5.81 -4.98 -0.03 0.97 16 8 N -0.67 -8.23 6.36 -115.06 -0.73 -8.96 16 9 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 10 C 0.12 1.94 3.24 -26.73 -0.09 1.86 16 11 H 0.10 1.90 6.78 -51.93 -0.35 1.55 16 12 O -0.53 -9.33 13.08 -35.23 -0.46 -9.79 16 13 C 0.03 0.45 4.66 -3.82 -0.02 0.44 16 14 N -0.53 -11.59 4.56 -244.37 -1.11 -12.70 16 15 C 0.04 0.74 9.37 60.06 0.56 1.31 16 16 C 0.19 5.10 4.55 -4.98 -0.02 5.08 16 17 C -0.50 -14.47 8.39 -34.44 -0.29 -14.76 16 18 H 0.06 1.80 7.17 -52.48 -0.38 1.43 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 21 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.08 -0.86 9.63 -39.46 -0.38 -1.24 16 26 C 0.07 0.81 6.72 -39.12 -0.26 0.54 16 27 O -0.49 -5.13 13.29 -34.23 -0.45 -5.59 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.13 0.96 6.30 -52.48 -0.33 0.63 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.35 4.47 8.72 -39.29 -0.34 4.13 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.36 4.99 9.04 45.56 0.41 5.40 16 39 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 40 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.65 6.66 -51.93 -0.35 1.30 16 43 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 44 H 0.03 0.84 6.63 -51.92 -0.34 0.49 16 45 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 48 H 0.38 2.13 9.06 45.56 0.41 2.54 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -34.96 396.55 -8.88 -43.84 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.25 Total: 7.06 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -1.22 Total: -7.00 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -1.11 Total: -48.02 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.27 Total: -18.96 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.96 -8.88 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581483607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.164 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds