Wall clock time and date at job start Tue Mar 31 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00395 * 2 1 4 4 O 1.21280 * 120.00156 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99771 * 359.71823 * 3 2 1 6 6 H 1.09003 * 115.55386 * 326.93129 * 5 3 2 7 7 C 1.53066 * 117.50643 * 181.22771 * 5 3 2 8 8 C 1.52697 * 59.93263 * 252.53180 * 7 5 3 9 9 C 1.53246 * 117.87963 * 107.77158 * 8 7 5 10 10 C 1.53326 * 108.49369 * 196.25143 * 9 8 7 11 11 O 1.42873 * 109.32200 * 306.04068 * 10 9 8 12 12 C 1.42865 * 114.52744 * 64.35467 * 11 10 9 13 13 C 1.53244 * 117.88332 * 252.22432 * 8 7 5 14 14 C 1.46505 * 119.99631 * 179.97438 * 2 1 3 15 15 H 1.09001 * 110.88550 * 177.57510 * 14 2 1 16 16 C 1.54902 * 111.00690 * 301.45985 * 14 2 1 17 17 N 1.47427 * 104.83430 * 155.08285 * 16 14 2 18 18 C 1.36933 * 125.65122 * 155.90638 * 17 16 14 19 19 H 1.08003 * 119.99983 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99881 * 180.02562 * 18 17 16 21 21 N 1.31611 * 120.00392 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99658 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47049 * 90.00145 * 22 20 18 24 24 H 1.48505 * 109.47074 * 209.99848 * 22 20 18 25 25 H 1.48494 * 109.47487 * 329.99902 * 22 20 18 26 26 C 1.47030 * 108.69845 * 335.87240 * 17 16 14 27 27 C 1.54315 * 107.27361 * 1.05649 * 26 17 16 28 28 H 1.08997 * 110.72174 * 263.83032 * 27 26 17 29 29 O 1.42902 * 110.72164 * 140.55659 * 27 26 17 30 30 H 1.09002 * 109.46836 * 90.00426 * 1 2 3 31 31 H 1.08992 * 109.47725 * 210.00486 * 1 2 3 32 32 H 1.09000 * 109.47287 * 330.01074 * 1 2 3 33 33 H 1.08995 * 117.50629 * 0.02562 * 7 5 3 34 34 H 1.09010 * 117.50447 * 145.03136 * 7 5 3 35 35 H 1.09001 * 109.63465 * 315.94954 * 9 8 7 36 36 H 1.09001 * 109.63482 * 76.54883 * 9 8 7 37 37 H 1.08994 * 109.50009 * 186.08667 * 10 9 8 38 38 H 1.09005 * 109.49707 * 65.98963 * 10 9 8 39 39 H 1.09004 * 109.49730 * 175.68959 * 12 11 10 40 40 H 1.08999 * 109.49743 * 55.59999 * 12 11 10 41 41 H 1.08998 * 109.63752 * 283.45334 * 13 8 7 42 42 H 1.09007 * 109.63452 * 43.84758 * 13 8 7 43 43 H 1.09000 * 110.36543 * 273.92019 * 16 14 2 44 44 H 1.08997 * 110.36881 * 36.13360 * 16 14 2 45 45 H 0.96996 * 120.00922 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.87729 * 120.47679 * 26 17 16 47 47 H 1.08998 * 109.87735 * 241.48189 * 26 17 16 48 48 H 0.96699 * 113.99892 * 66.47401 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4722 -0.0064 6 1 0.4390 2.4661 -0.5470 7 6 2.2077 3.7630 -0.0352 8 6 1.4802 3.3476 1.2415 9 6 2.3247 2.8344 2.4128 10 6 1.4002 2.1095 3.3980 11 8 0.3262 2.9775 3.7646 12 6 -0.5438 3.3318 2.6882 13 6 0.2382 4.1464 1.6509 14 6 2.1975 -1.2688 0.0006 15 1 3.2729 -1.0967 -0.0426 16 6 1.8215 -2.1265 1.2345 17 7 2.0989 -3.5159 0.8271 18 6 2.3681 -4.5574 1.6743 19 1 2.3891 -4.3937 2.7417 20 6 2.6140 -5.8237 1.1614 21 7 2.5889 -6.0231 -0.1393 22 14 2.9819 -7.2443 2.3172 23 1 1.7126 -7.9156 2.6961 24 1 3.8729 -8.2181 1.6367 25 1 3.6526 -6.7286 3.5376 26 6 2.0379 -3.5982 -0.6397 27 6 1.7320 -2.1801 -1.1658 28 1 0.6643 -2.0583 -1.3479 29 8 2.4827 -1.9076 -2.3508 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8898 0.5138 32 1 -0.3634 0.8901 0.5137 33 1 3.2934 3.6681 -0.0499 34 1 1.8019 4.6060 -0.5947 35 1 3.0811 2.1420 2.0432 36 1 2.8063 3.6746 2.9130 37 1 1.9637 1.8318 4.2887 38 1 0.9982 1.2124 2.9269 39 1 -1.3715 3.9290 3.0709 40 1 -0.9329 2.4267 2.2218 41 1 0.5420 5.0984 2.0862 42 1 -0.3863 4.3266 0.7758 43 1 2.4386 -1.8516 2.0898 44 1 0.7654 -2.0035 1.4744 45 1 2.7604 -6.9079 -0.4978 46 1 2.9956 -3.9406 -1.0318 47 1 1.2474 -4.2860 -0.9397 48 1 2.2305 -2.4511 -3.1098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047653183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:09 Heat of formation + Delta-G solvation = -69.462265 kcal Electronic energy + Delta-G solvation = -29561.358788 eV Core-core repulsion = 25618.233517 eV Total energy + Delta-G solvation = -3943.125271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.79838 -39.20041 -37.92768 -36.33745 -35.21406 -34.77933 -31.92979 -31.44816 -30.35731 -28.72119 -27.45530 -26.70607 -25.03370 -23.97543 -23.77150 -22.84003 -20.52384 -20.41703 -19.35781 -18.49677 -17.46377 -17.08693 -16.56475 -16.39551 -16.21885 -15.81593 -15.18512 -15.03227 -14.74559 -14.44109 -14.08788 -13.99005 -13.62864 -13.30027 -13.13953 -12.90991 -12.72022 -12.60349 -12.43399 -12.18398 -12.10825 -11.93368 -11.56607 -11.48451 -11.24932 -11.19475 -10.95732 -10.88358 -10.80675 -10.56290 -10.23708 -10.16252 -9.94178 -9.85539 -9.67613 -9.44062 -9.26326 -8.73914 -8.37732 -6.94767 -5.79005 -3.14452 2.52995 3.04558 3.36894 3.42313 3.44267 3.61981 3.69655 4.24915 4.42394 4.48179 4.54574 4.58277 4.65378 4.79086 4.83042 4.97173 5.10454 5.19460 5.23297 5.26701 5.38741 5.39196 5.45123 5.47149 5.50869 5.55969 5.60342 5.63630 5.65060 5.72995 5.80833 5.84573 5.90848 5.96361 6.04122 6.06439 6.11675 6.44821 6.56589 6.86252 7.03741 7.31821 7.44606 7.56801 7.70932 8.13842 8.16889 8.34190 9.11352 9.71627 10.34476 11.32325 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.003547 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.501715 B = 7892.763443 C = 8805.888710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.597 5.597 3 C 0.546 3.454 4 O -0.537 6.537 5 C -0.182 4.182 6 H 0.121 0.879 7 C -0.137 4.137 8 C -0.098 4.098 9 C -0.128 4.128 10 C 0.064 3.936 11 O -0.383 6.383 12 C 0.062 3.938 13 C -0.117 4.117 14 C 0.134 3.866 15 H 0.114 0.886 16 C 0.132 3.868 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.153 3.847 27 C 0.066 3.934 28 H 0.055 0.945 29 O -0.561 6.561 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.025 0.975 45 H 0.254 0.746 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 19.588 0.057 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.328 5.328 3 C 0.334 3.666 4 O -0.414 6.414 5 C -0.204 4.204 6 H 0.139 0.861 7 C -0.174 4.174 8 C -0.098 4.098 9 C -0.166 4.166 10 C -0.013 4.013 11 O -0.301 6.301 12 C -0.014 4.014 13 C -0.155 4.155 14 C 0.030 3.970 15 H 0.132 0.868 16 C 0.005 3.995 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.027 3.973 27 C 0.006 3.994 28 H 0.073 0.927 29 O -0.366 6.366 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.321 19.834 0.620 21.151 hybrid contribution -0.268 -1.453 -0.371 1.523 sum -7.589 18.381 0.250 19.888 Atomic orbital electron populations 1.21828 0.80078 1.03346 1.01735 1.47634 1.06697 1.05755 1.72723 1.19510 0.87314 0.84107 0.75656 1.90682 1.13813 1.87069 1.49853 1.22449 1.02391 0.90969 1.04548 0.86090 1.23044 1.00201 0.95367 0.98781 1.21423 0.98840 1.00241 0.89339 1.21947 0.98174 1.01554 0.94877 1.22616 0.87915 0.91900 0.98874 1.87864 1.40656 1.67622 1.34005 1.22585 0.92248 0.98307 0.88308 1.21859 0.94962 0.98920 0.99714 1.22395 0.98392 0.81105 0.95109 0.86775 1.21769 0.97761 0.85700 0.94297 1.44228 1.83353 1.03034 1.01984 1.19070 1.41465 0.86481 0.88939 0.90137 1.24816 1.01603 0.97608 0.96148 1.69927 1.55441 1.21618 1.09933 0.86075 0.77781 0.82048 0.79592 1.21521 1.21581 1.20559 1.21838 1.01756 0.89560 0.84137 1.23532 0.93426 0.97485 0.85005 0.92704 1.86499 1.64035 1.64762 1.21259 0.92719 0.90135 0.91292 0.87247 0.87984 0.89230 0.90317 0.88569 0.92864 0.88820 0.93082 0.90149 0.90570 0.93436 0.95764 0.93607 0.92172 0.93411 0.77998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 8.68 59.85 0.52 1.36 16 2 N -0.60 -9.18 2.91 -171.48 -0.50 -9.67 16 3 C 0.55 8.51 6.37 -10.99 -0.07 8.44 16 4 O -0.54 -10.42 14.44 5.56 0.08 -10.34 16 5 C -0.18 -2.06 4.53 -91.88 -0.42 -2.47 16 6 H 0.12 1.11 7.21 -51.93 -0.37 0.74 16 7 C -0.14 -1.40 9.52 -26.85 -0.26 -1.66 16 8 C -0.10 -0.98 2.03 -154.55 -0.31 -1.29 16 9 C -0.13 -1.47 5.58 -26.44 -0.15 -1.62 16 10 C 0.06 0.72 6.85 37.33 0.26 0.98 16 11 O -0.38 -4.35 10.69 -35.23 -0.38 -4.72 16 12 C 0.06 0.53 6.85 37.33 0.26 0.78 16 13 C -0.12 -0.91 5.92 -26.43 -0.16 -1.06 16 14 C 0.13 2.57 3.18 -65.78 -0.21 2.36 16 15 H 0.11 2.57 7.01 -51.93 -0.36 2.20 16 16 C 0.13 2.72 6.80 -2.53 -0.02 2.70 16 17 N -0.60 -15.08 3.39 -170.07 -0.58 -15.66 16 18 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -26.60 10.31 55.49 0.57 -26.03 16 22 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.15 3.64 5.15 -3.06 -0.02 3.63 16 27 C 0.07 1.26 3.89 -24.90 -0.10 1.17 16 28 H 0.06 0.94 7.06 -51.93 -0.37 0.58 16 29 O -0.56 -10.48 13.39 -35.23 -0.47 -10.95 16 30 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.08 0.97 6.30 -51.93 -0.33 0.64 16 32 H 0.07 0.63 6.51 -51.93 -0.34 0.29 16 33 H 0.11 1.32 7.67 -51.93 -0.40 0.92 16 34 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.09 1.26 6.00 -51.93 -0.31 0.94 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.42 8.02 -51.93 -0.42 0.00 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.47 6.28 -51.93 -0.33 0.15 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.06 1.63 7.29 -51.93 -0.38 1.25 16 47 H 0.05 1.22 7.50 -51.93 -0.39 0.84 16 48 H 0.37 5.35 9.12 45.56 0.42 5.77 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -33.45 372.35 -8.52 -41.97 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.92 Total: 6.40 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.92 Total: 6.55 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.50 Total: -51.37 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.77 Total: -26.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.45 -8.52 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047653183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.493 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds