Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.52440 * 2 1 4 4 C 1.53041 * 109.49915 * 239.91415 * 2 1 3 5 5 C 1.53038 * 109.53679 * 178.68395 * 4 2 1 6 6 C 1.53193 * 109.31732 * 61.36651 * 5 4 2 7 7 H 1.09006 * 109.69960 * 65.21652 * 6 5 4 8 8 C 1.52994 * 109.59006 * 185.57441 * 6 5 4 9 9 N 1.46494 * 109.47264 * 178.97674 * 8 6 5 10 10 C 1.34781 * 120.00450 * 182.48121 * 9 8 6 11 11 O 1.21280 * 119.99412 * 4.83876 * 10 9 8 12 12 C 1.50696 * 120.00233 * 184.83565 * 10 9 8 13 13 H 1.08999 * 110.49287 * 31.70622 * 12 10 9 14 14 C 1.54101 * 110.76055 * 268.96848 * 12 10 9 15 15 N 1.47054 * 103.86113 * 241.68113 * 14 12 10 16 16 C 1.33943 * 109.17856 * 359.60326 * 15 14 12 17 17 O 1.21592 * 123.04010 * 180.24471 * 16 15 14 18 18 N 1.33943 * 113.91981 * 0.26499 * 16 15 14 19 19 N 1.46925 * 108.77290 * 305.36338 * 6 5 4 20 20 C 1.36934 * 120.63068 * 233.62482 * 19 6 5 21 21 H 1.08001 * 119.99841 * 33.56303 * 20 19 6 22 22 C 1.38814 * 119.99981 * 213.55685 * 20 19 6 23 23 N 1.31619 * 120.00049 * 10.51303 * 22 20 19 24 24 Si 1.86800 * 120.00058 * 190.51117 * 22 20 19 25 25 H 1.48496 * 109.46985 * 64.63827 * 24 22 20 26 26 H 1.48501 * 109.47025 * 184.64007 * 24 22 20 27 27 H 1.48507 * 109.46802 * 304.64046 * 24 22 20 28 28 C 1.46930 * 118.73709 * 53.60749 * 19 6 5 29 29 H 1.08998 * 109.47495 * 299.91989 * 1 2 3 30 30 H 1.09003 * 109.47266 * 59.92156 * 1 2 3 31 31 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47048 * 180.08153 * 3 2 1 33 33 H 1.08999 * 109.46924 * 300.07601 * 3 2 1 34 34 H 1.08995 * 109.47652 * 60.07966 * 3 2 1 35 35 H 1.09000 * 109.45962 * 298.70428 * 4 2 1 36 36 H 1.08997 * 109.45679 * 58.67711 * 4 2 1 37 37 H 1.09003 * 109.50266 * 301.41213 * 5 4 2 38 38 H 1.09004 * 109.49512 * 181.31819 * 5 4 2 39 39 H 1.08999 * 109.46998 * 58.97887 * 8 6 5 40 40 H 1.08997 * 109.47451 * 298.98174 * 8 6 5 41 41 H 0.97002 * 119.99981 * 2.48210 * 9 8 6 42 42 H 1.08999 * 110.66265 * 123.02805 * 14 12 10 43 43 H 1.09009 * 110.43716 * 0.22003 * 14 12 10 44 44 H 0.97007 * 125.40644 * 179.87283 * 15 14 12 45 45 H 0.96996 * 125.41172 * 179.97438 * 18 16 15 46 46 H 0.97003 * 120.00168 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.58630 * 66.17929 * 28 19 6 48 48 H 1.09004 * 109.58304 * 186.59983 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 3.5708 -0.6951 -1.2659 6 6 4.1053 -1.4267 -0.0306 7 1 3.8396 -2.4824 -0.0852 8 6 5.6273 -1.2834 0.0319 9 7 6.1331 -1.9630 1.2270 10 6 7.4487 -1.9259 1.5174 11 8 8.2006 -1.2579 0.8397 12 6 7.9854 -2.7142 2.6843 13 1 7.4039 -3.6246 2.8295 14 6 7.9807 -1.8615 3.9679 15 7 9.3999 -1.7857 4.3456 16 6 10.1288 -2.4752 3.4583 17 8 11.3377 -2.5819 3.5335 18 7 9.4057 -3.0361 2.4802 19 7 3.5046 -0.8290 1.1697 20 6 4.2936 -0.3784 2.1942 21 1 5.2623 0.0495 1.9817 22 6 3.8483 -0.4713 3.5056 23 7 2.7708 -1.1729 3.7867 24 14 4.7785 0.3994 4.8717 25 1 4.7046 1.8678 4.6629 26 1 4.1708 0.0545 6.1821 27 1 6.1994 -0.0320 4.8560 28 6 2.0413 -0.7237 1.2496 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1313 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8893 34 1 1.6797 1.9559 0.8906 35 1 1.6967 -1.7574 -1.2351 36 1 1.6584 -0.2245 -2.1388 37 1 3.9160 0.3388 -1.2540 38 1 3.9334 -1.1898 -2.1669 39 1 5.8912 -0.2267 0.0757 40 1 6.0713 -1.7321 -0.8567 41 1 5.5212 -2.4399 1.8093 42 1 7.4017 -2.3497 4.7518 43 1 7.5858 -0.8665 3.7625 44 1 9.7518 -1.3148 5.1172 45 1 9.7622 -3.5694 1.7528 46 1 2.4598 -1.2381 4.7032 47 1 1.6053 -1.7215 1.2982 48 1 1.7638 -0.1578 2.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089691221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = -35.558976 kcal Electronic energy + Delta-G solvation = -29828.653614 eV Core-core repulsion = 25919.291251 eV Total energy + Delta-G solvation = -3909.362363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.11820 -39.21795 -38.36705 -36.07571 -35.14289 -33.30750 -32.91452 -32.28502 -30.09613 -29.36698 -27.27417 -26.66606 -25.57962 -24.27112 -22.86531 -22.28877 -21.68365 -20.23963 -19.99380 -17.98389 -17.87544 -17.38459 -16.40073 -16.21685 -15.70883 -15.46887 -15.11872 -14.58916 -14.35120 -14.13738 -13.91942 -13.82698 -13.72342 -13.37793 -13.34237 -13.11172 -12.69864 -12.55291 -12.33421 -12.15312 -11.64861 -11.45774 -11.35435 -11.20059 -10.92608 -10.86141 -10.70896 -10.50629 -10.26405 -10.17806 -10.15699 -9.91815 -9.86440 -9.53650 -9.38598 -9.25369 -8.72597 -8.67069 -8.35388 -6.70992 -5.94581 -3.44534 2.67556 3.01975 3.14068 3.22571 3.28907 3.32272 3.58553 4.16016 4.29353 4.46605 4.94643 4.98754 5.12685 5.19496 5.38548 5.41303 5.46760 5.53748 5.61169 5.68681 5.79178 5.80565 5.95278 6.02729 6.10827 6.17259 6.26018 6.30179 6.38230 6.41528 6.42385 6.45975 6.59338 6.84460 6.85757 6.93329 7.03385 7.04296 7.05934 7.21443 7.31093 7.43612 7.58641 7.67228 8.05916 8.31680 8.63426 8.72020 9.05480 9.66148 10.26558 11.11423 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.004388 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.693418 B = 6379.843596 C = 7575.746826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.096 4.096 5 C -0.131 4.131 6 C 0.161 3.839 7 H 0.032 0.968 8 C 0.135 3.865 9 N -0.684 5.684 10 C 0.496 3.504 11 O -0.546 6.546 12 C 0.106 3.894 13 H 0.112 0.888 14 C 0.102 3.898 15 N -0.738 5.738 16 C 0.708 3.292 17 O -0.595 6.595 18 N -0.715 5.715 19 N -0.585 5.585 20 C -0.250 4.250 21 H 0.066 0.934 22 C 0.011 3.989 23 N -0.897 5.897 24 Si 0.888 3.112 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.274 1.274 28 C 0.189 3.811 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.416 0.584 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.430 0.570 45 H 0.431 0.569 46 H 0.255 0.745 47 H 0.018 0.982 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -2.895 -3.828 4.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.181 4.181 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.054 3.946 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.335 5.335 10 C 0.279 3.721 11 O -0.424 6.424 12 C -0.004 4.004 13 H 0.130 0.870 14 C -0.024 4.024 15 N -0.401 5.401 16 C 0.407 3.593 17 O -0.474 6.474 18 N -0.376 5.376 19 N -0.308 5.308 20 C -0.380 4.380 21 H 0.084 0.916 22 C -0.189 4.189 23 N -0.541 5.541 24 Si 0.718 3.282 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.200 1.200 28 C 0.063 3.937 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.271 0.729 45 H 0.273 0.727 46 H 0.065 0.935 47 H 0.036 0.964 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.180 -2.531 -4.105 4.826 hybrid contribution -0.010 0.373 1.062 1.126 sum 0.171 -2.158 -3.043 3.734 Atomic orbital electron populations 1.21761 0.96042 1.00831 1.00531 1.21252 0.93854 0.96386 0.98218 1.21700 1.02066 0.95126 0.99255 1.21406 0.95279 0.99630 0.97008 1.22010 0.96120 1.01292 0.97596 1.20737 0.89998 0.95230 0.88673 0.95033 1.21314 0.93974 0.97781 0.85867 1.45965 1.06949 1.53355 1.27245 1.20488 0.83148 0.82789 0.85708 1.90696 1.57892 1.41935 1.51859 1.21839 0.84812 0.99375 0.94409 0.87037 1.22478 0.83480 1.01926 0.94478 1.45060 1.07560 1.56997 1.30442 1.15823 0.84854 0.78388 0.80248 1.90964 1.11226 1.67179 1.78040 1.44778 1.06097 1.56815 1.29954 1.43997 1.01706 1.69402 1.15705 1.19087 1.00996 1.33280 0.84606 0.91600 1.25141 0.98039 0.98377 0.97319 1.69961 1.24565 1.40843 1.18703 0.86676 0.79584 0.80131 0.81768 1.21288 1.21771 1.20009 1.20794 0.82645 0.96471 0.93743 0.93059 0.93975 0.93329 0.91638 0.95067 0.93659 0.92924 0.93668 0.91641 0.93157 0.91416 0.92763 0.74598 0.88764 0.88568 0.72873 0.72750 0.93481 0.96420 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.48 37.16 0.32 -1.66 16 2 C -0.10 -1.58 0.77 -154.39 -0.12 -1.70 16 3 C -0.12 -2.08 7.99 37.16 0.30 -1.78 16 4 C -0.10 -1.43 4.71 -26.69 -0.13 -1.56 16 5 C -0.13 -1.97 5.03 -26.61 -0.13 -2.11 16 6 C 0.16 2.72 3.01 -67.60 -0.20 2.52 16 7 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 8 C 0.13 2.23 4.44 -4.05 -0.02 2.21 16 9 N -0.68 -10.98 3.79 -60.30 -0.23 -11.21 16 10 C 0.50 8.10 6.90 -10.99 -0.08 8.02 16 11 O -0.55 -10.89 16.69 5.56 0.09 -10.80 16 12 C 0.11 1.42 4.15 -68.21 -0.28 1.14 16 13 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.10 1.39 7.47 -3.16 -0.02 1.37 16 15 N -0.74 -10.34 6.37 -64.70 -0.41 -10.75 16 16 C 0.71 11.70 8.92 -88.41 -0.79 10.91 16 17 O -0.60 -11.89 18.05 5.29 0.10 -11.80 16 18 N -0.71 -10.16 5.69 -59.33 -0.34 -10.50 16 19 N -0.58 -11.66 2.40 -164.77 -0.40 -12.06 16 20 C -0.25 -5.43 6.88 -15.06 -0.10 -5.53 16 21 H 0.07 1.49 5.98 -52.49 -0.31 1.18 16 22 C 0.01 0.25 5.04 -17.43 -0.09 0.16 16 23 N -0.90 -21.88 11.21 55.49 0.62 -21.26 16 24 Si 0.89 18.40 29.57 -169.99 -5.03 13.37 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -5.11 5.26 56.52 0.30 -4.81 16 28 C 0.19 3.81 3.92 -3.71 -0.01 3.80 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.20 5.97 -51.93 -0.31 0.89 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 1.04 6.33 -51.93 -0.33 0.71 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.27 7.44 -51.93 -0.39 0.88 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.42 6.79 7.47 -40.82 -0.31 6.48 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.10 1.51 6.17 -51.92 -0.32 1.19 16 44 H 0.43 5.13 8.96 -40.82 -0.37 4.76 16 45 H 0.43 5.46 8.96 -40.82 -0.37 5.10 16 46 H 0.25 6.22 8.31 -40.82 -0.34 5.89 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 1.97 6.28 -51.93 -0.33 1.64 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -28.56 368.67 -9.16 -37.72 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -7.76 Total: 15.95 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: -1.37 Total: 15.78 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.75 Total: -65.79 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.19 Total: -22.59 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.56 -9.16 -37.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089691221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.160 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds