Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00118 * 2 1 4 4 H 1.48506 * 109.46657 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47107 * 120.00007 * 3 2 1 6 6 H 1.48494 * 109.47545 * 240.00445 * 3 2 1 7 7 C 1.38814 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00507 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99698 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00150 * 180.02562 * 9 7 2 11 11 C 1.53787 * 113.61509 * 252.50232 * 10 9 7 12 12 C 1.53784 * 87.07995 * 220.01820 * 11 10 9 13 13 C 1.53001 * 113.61443 * 139.98079 * 12 11 10 14 14 N 1.46499 * 109.46861 * 87.50116 * 13 12 11 15 15 C 1.34779 * 119.99592 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00196 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99908 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.58900 * 2.54956 * 17 15 14 19 19 C 1.53191 * 109.58552 * 242.27006 * 17 15 14 20 20 C 1.53044 * 109.31335 * 185.58071 * 19 17 15 21 21 C 1.53033 * 109.54094 * 61.36256 * 20 19 17 22 22 C 1.53195 * 109.31273 * 298.63293 * 21 20 19 23 23 N 1.46930 * 108.77179 * 54.63955 * 22 21 20 24 24 C 1.34771 * 120.63359 * 126.37178 * 23 22 21 25 25 N 1.34780 * 119.99869 * 4.84827 * 24 23 22 26 26 O 1.21584 * 120.00318 * 184.85396 * 24 23 22 27 27 C 1.53778 * 113.61470 * 155.00452 * 10 9 7 28 28 H 0.96998 * 120.00088 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00154 * 0.02562 * 9 7 2 30 30 H 1.09004 * 112.84949 * 23.80391 * 10 9 7 31 31 H 1.09007 * 113.61038 * 334.56269 * 11 10 9 32 32 H 1.08999 * 113.61711 * 105.46633 * 11 10 9 33 33 H 1.08998 * 113.68421 * 270.87274 * 12 11 10 34 34 H 1.08999 * 109.46920 * 207.49942 * 13 12 11 35 35 H 1.08999 * 109.46628 * 327.49997 * 13 12 11 36 36 H 0.96995 * 120.00145 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.49850 * 305.52361 * 19 17 15 38 38 H 1.09002 * 109.50038 * 65.62275 * 19 17 15 39 39 H 1.09007 * 109.45827 * 181.38494 * 20 19 17 40 40 H 1.08998 * 109.45439 * 301.35031 * 20 19 17 41 41 H 1.08997 * 109.49958 * 58.58878 * 21 20 19 42 42 H 1.09001 * 109.50085 * 178.69012 * 21 20 19 43 43 H 1.08993 * 109.58715 * 174.42159 * 22 21 20 44 44 H 1.08994 * 109.59158 * 294.85226 * 22 21 20 45 45 H 0.96998 * 119.99571 * 5.20346 * 25 24 23 46 46 H 0.97003 * 119.99831 * 185.20407 * 25 24 23 47 47 H 1.09004 * 113.60952 * 254.52637 * 27 10 9 48 48 H 1.08998 * 113.61783 * 25.42866 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.9993 -4.4021 -1.3444 12 6 1.8481 -5.6976 -0.5296 13 6 0.8451 -6.6852 -1.1292 14 7 1.5264 -7.5431 -2.1018 15 6 0.8361 -8.4948 -2.7608 16 8 -0.3489 -8.6413 -2.5482 17 6 1.5369 -9.3778 -3.7609 18 1 2.5987 -9.1323 -3.7842 19 6 0.9295 -9.1622 -5.1506 20 6 1.5481 -10.1590 -6.1335 21 6 1.2296 -11.5865 -5.6832 22 6 1.8405 -11.8296 -4.2996 23 7 1.3624 -10.7865 -3.3818 24 6 0.7746 -11.1157 -2.2145 25 7 0.7082 -12.4070 -1.8341 26 8 0.3042 -10.2479 -1.5047 27 6 1.2602 -4.8287 0.5948 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 3.0657 -3.5638 0.4049 31 1 1.1209 -4.1569 -1.9416 32 1 2.9274 -4.3500 -1.9137 33 1 2.7980 -6.1645 -0.2694 34 1 0.4223 -7.3007 -0.3352 35 1 0.0465 -6.1348 -1.6266 36 1 2.4740 -7.4257 -2.2721 37 1 -0.1483 -9.3180 -5.1047 38 1 1.1368 -8.1456 -5.4846 39 1 1.1355 -9.9915 -7.1285 40 1 2.6287 -10.0194 -6.1603 41 1 0.1489 -11.7194 -5.6323 42 1 1.6506 -12.2954 -6.3962 43 1 1.5339 -12.8086 -3.9316 44 1 2.9275 -11.7864 -4.3673 45 1 1.1487 -13.0913 -2.3618 46 1 0.2198 -12.6519 -1.0325 47 1 1.5918 -5.1212 1.5912 48 1 0.1799 -4.7002 0.5279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091318708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = -17.768475 kcal Electronic energy + Delta-G solvation = -28025.661224 eV Core-core repulsion = 24117.070316 eV Total energy + Delta-G solvation = -3908.590909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14842 -39.04491 -38.13689 -37.55490 -34.47166 -34.02151 -33.16869 -32.73485 -31.57171 -30.15933 -27.50193 -25.76182 -24.98040 -24.24049 -23.57944 -21.89247 -21.00747 -20.65145 -19.74295 -19.10042 -18.45990 -17.23195 -16.99378 -16.61106 -16.06294 -15.54124 -15.24477 -15.15252 -14.89118 -14.66454 -14.47946 -14.35643 -13.86199 -13.65814 -13.54725 -13.40943 -13.06601 -12.89654 -12.49460 -11.92613 -11.79193 -11.70797 -11.60074 -11.31076 -11.26848 -11.15708 -11.13068 -10.78389 -10.45514 -10.13645 -10.10616 -9.91516 -9.81478 -9.67472 -9.50900 -9.24935 -8.96869 -8.81400 -8.53419 -6.90643 -5.73303 -3.01870 2.23466 2.91926 3.24566 3.35594 3.46153 3.50270 3.51654 3.89838 4.27664 4.35798 4.45050 4.61029 4.62613 4.76239 4.83363 4.95922 5.01712 5.15141 5.18519 5.28243 5.37187 5.37810 5.41721 5.53262 5.60073 5.64310 5.66354 5.92855 5.95548 6.00180 6.03049 6.14224 6.22866 6.40233 6.41938 6.44772 6.47584 6.65297 6.69201 6.77509 6.95262 7.21341 7.58153 7.72738 7.77045 8.40453 8.45389 8.68886 9.56067 10.15529 10.49894 11.49133 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.002211 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.457772 B =12661.800787 C =13258.098594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 C -0.159 4.159 12 C -0.126 4.126 13 C 0.141 3.859 14 N -0.727 5.727 15 C 0.523 3.477 16 O -0.503 6.503 17 C 0.148 3.852 18 H 0.084 0.916 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.137 4.137 22 C 0.114 3.886 23 N -0.620 5.620 24 C 0.696 3.304 25 N -0.870 5.870 26 O -0.545 6.545 27 C -0.142 4.142 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.393 0.607 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.391 0.609 46 H 0.413 0.587 47 H 0.060 0.940 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -30.265 -11.952 33.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.053 3.947 11 C -0.201 4.201 12 C -0.145 4.145 13 C 0.018 3.982 14 N -0.379 5.379 15 C 0.307 3.693 16 O -0.376 6.376 17 C 0.040 3.960 18 H 0.102 0.898 19 C -0.164 4.164 20 C -0.155 4.155 21 C -0.176 4.176 22 C -0.009 4.009 23 N -0.361 5.361 24 C 0.395 3.605 25 N -0.441 5.441 26 O -0.419 6.419 27 C -0.182 4.182 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.221 0.779 46 H 0.245 0.755 47 H 0.079 0.921 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.822 -29.452 -11.379 32.107 hybrid contribution 0.694 0.322 -0.125 0.775 sum 6.516 -29.131 -11.505 31.991 Atomic orbital electron populations 1.69651 1.05124 1.25802 1.57502 1.24769 0.95519 0.97754 1.02977 0.86265 0.78514 0.83578 0.77808 1.21713 1.21278 1.21284 1.19262 0.91013 0.84295 1.42849 0.91189 1.42416 1.05777 0.99885 1.87032 1.21532 0.95245 0.85022 0.92875 1.23930 1.01210 0.95084 0.99828 1.22628 0.98438 0.94412 0.99044 1.21292 0.94836 0.91159 0.90919 1.45857 1.12595 1.36144 1.43320 1.19667 0.87921 0.80404 0.81276 1.90704 1.16002 1.67742 1.63152 1.21011 0.99778 0.80489 0.94747 0.89770 1.21867 1.01905 1.00331 0.92271 1.21499 1.01068 0.94020 0.98885 1.21945 1.01920 0.97686 0.96021 1.21660 0.98989 0.90393 0.89852 1.47007 1.64485 1.05651 1.18989 1.16076 0.78938 0.83490 0.81950 1.43207 1.61375 1.06955 1.32601 1.91248 1.50453 1.45931 1.54291 1.23436 1.01011 0.97011 0.96740 0.93428 0.78062 0.90766 0.90392 0.92902 0.89628 0.91862 0.91748 0.77402 0.90207 0.90032 0.91015 0.91435 0.91191 0.90471 0.90228 0.91081 0.77909 0.75492 0.92139 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.86 9.97 -15.06 -0.15 -7.01 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -18.37 5.40 -52.63 -0.28 -18.65 16 10 C 0.17 3.35 4.48 -67.12 -0.30 3.04 16 11 C -0.16 -2.78 7.43 -25.91 -0.19 -2.97 16 12 C -0.13 -1.88 3.75 -89.80 -0.34 -2.21 16 13 C 0.14 2.19 5.51 -4.04 -0.02 2.17 16 14 N -0.73 -9.74 5.56 -60.30 -0.33 -10.07 16 15 C 0.52 7.64 4.81 -10.99 -0.05 7.58 16 16 O -0.50 -9.72 13.90 -20.04 -0.28 -9.99 16 17 C 0.15 1.47 3.31 -68.75 -0.23 1.24 16 18 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 19 C -0.13 -1.06 5.33 -26.61 -0.14 -1.20 16 20 C -0.12 -0.63 5.88 -26.69 -0.16 -0.79 16 21 C -0.14 -0.63 6.08 -26.61 -0.16 -0.79 16 22 C 0.11 0.55 6.35 -3.71 -0.02 0.53 16 23 N -0.62 -5.69 2.97 -172.23 -0.51 -6.20 16 24 C 0.70 8.33 8.40 -86.92 -0.73 7.60 16 25 N -0.87 -6.31 8.74 27.63 0.24 -6.07 16 26 O -0.55 -9.47 12.28 -20.30 -0.25 -9.72 16 27 C -0.14 -2.47 7.39 -25.92 -0.19 -2.66 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.39 10.59 7.92 -40.82 -0.32 10.26 16 30 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 31 H 0.08 1.50 7.90 -51.93 -0.41 1.09 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.11 7.84 -51.93 -0.41 0.71 16 36 H 0.39 4.13 8.32 -40.82 -0.34 3.79 16 37 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.08 0.23 5.73 -51.93 -0.30 -0.07 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.39 1.48 6.41 -40.82 -0.26 1.22 16 46 H 0.41 2.77 8.93 -40.82 -0.36 2.40 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -37.90 379.70 -10.62 -48.53 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.85 Total: 12.82 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.78 Total: 4.02 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -0.17 Total: -69.01 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.53 Total: -19.72 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.90 -10.62 -48.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091318708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.758 kcal (2) G-P(sol) polarization free energy of solvation -37.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds