Wall clock time and date at job start Tue Mar 31 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00118 * 2 1 4 4 H 1.48506 * 109.46657 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47107 * 120.00007 * 3 2 1 6 6 H 1.48494 * 109.47545 * 240.00445 * 3 2 1 7 7 C 1.38814 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00507 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99698 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00150 * 180.02562 * 9 7 2 11 11 C 1.53787 * 113.61509 * 252.50232 * 10 9 7 12 12 C 1.53784 * 87.07995 * 220.01820 * 11 10 9 13 13 C 1.53001 * 113.61443 * 139.98079 * 12 11 10 14 14 N 1.46499 * 109.46861 * 87.50116 * 13 12 11 15 15 C 1.34779 * 119.99592 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00196 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99908 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.58900 * 2.54956 * 17 15 14 19 19 C 1.53191 * 109.58552 * 242.27006 * 17 15 14 20 20 C 1.53044 * 109.31335 * 185.58071 * 19 17 15 21 21 C 1.53033 * 109.54094 * 61.36256 * 20 19 17 22 22 C 1.53195 * 109.31273 * 298.63293 * 21 20 19 23 23 N 1.46930 * 108.77179 * 54.63955 * 22 21 20 24 24 C 1.34771 * 120.63359 * 126.37178 * 23 22 21 25 25 N 1.34780 * 119.99869 * 4.84827 * 24 23 22 26 26 O 1.21584 * 120.00318 * 184.85396 * 24 23 22 27 27 C 1.53778 * 113.61470 * 155.00452 * 10 9 7 28 28 H 0.96998 * 120.00088 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00154 * 0.02562 * 9 7 2 30 30 H 1.09004 * 112.84949 * 23.80391 * 10 9 7 31 31 H 1.09007 * 113.61038 * 334.56269 * 11 10 9 32 32 H 1.08999 * 113.61711 * 105.46633 * 11 10 9 33 33 H 1.08998 * 113.68421 * 270.87274 * 12 11 10 34 34 H 1.08999 * 109.46920 * 207.49942 * 13 12 11 35 35 H 1.08999 * 109.46628 * 327.49997 * 13 12 11 36 36 H 0.96995 * 120.00145 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.49850 * 305.52361 * 19 17 15 38 38 H 1.09002 * 109.50038 * 65.62275 * 19 17 15 39 39 H 1.09007 * 109.45827 * 181.38494 * 20 19 17 40 40 H 1.08998 * 109.45439 * 301.35031 * 20 19 17 41 41 H 1.08997 * 109.49958 * 58.58878 * 21 20 19 42 42 H 1.09001 * 109.50085 * 178.69012 * 21 20 19 43 43 H 1.08993 * 109.58715 * 174.42159 * 22 21 20 44 44 H 1.08994 * 109.59158 * 294.85226 * 22 21 20 45 45 H 0.96998 * 119.99571 * 5.20346 * 25 24 23 46 46 H 0.97003 * 119.99831 * 185.20407 * 25 24 23 47 47 H 1.09004 * 113.60952 * 254.52637 * 27 10 9 48 48 H 1.08998 * 113.61783 * 25.42866 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.9993 -4.4021 -1.3444 12 6 1.8481 -5.6976 -0.5296 13 6 0.8451 -6.6852 -1.1292 14 7 1.5264 -7.5431 -2.1018 15 6 0.8361 -8.4948 -2.7608 16 8 -0.3489 -8.6413 -2.5482 17 6 1.5369 -9.3778 -3.7609 18 1 2.5987 -9.1323 -3.7842 19 6 0.9295 -9.1622 -5.1506 20 6 1.5481 -10.1590 -6.1335 21 6 1.2296 -11.5865 -5.6832 22 6 1.8405 -11.8296 -4.2996 23 7 1.3624 -10.7865 -3.3818 24 6 0.7746 -11.1157 -2.2145 25 7 0.7082 -12.4070 -1.8341 26 8 0.3042 -10.2479 -1.5047 27 6 1.2602 -4.8287 0.5948 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 3.0657 -3.5638 0.4049 31 1 1.1209 -4.1569 -1.9416 32 1 2.9274 -4.3500 -1.9137 33 1 2.7980 -6.1645 -0.2694 34 1 0.4223 -7.3007 -0.3352 35 1 0.0465 -6.1348 -1.6266 36 1 2.4740 -7.4257 -2.2721 37 1 -0.1483 -9.3180 -5.1047 38 1 1.1368 -8.1456 -5.4846 39 1 1.1355 -9.9915 -7.1285 40 1 2.6287 -10.0194 -6.1603 41 1 0.1489 -11.7194 -5.6323 42 1 1.6506 -12.2954 -6.3962 43 1 1.5339 -12.8086 -3.9316 44 1 2.9275 -11.7864 -4.3673 45 1 1.1487 -13.0913 -2.3618 46 1 0.2198 -12.6519 -1.0325 47 1 1.5918 -5.1212 1.5912 48 1 0.1799 -4.7002 0.5279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091318708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:52 Heat of formation + Delta-G solvation = -47.029098 kcal Electronic energy + Delta-G solvation = -28026.930060 eV Core-core repulsion = 24117.070316 eV Total energy + Delta-G solvation = -3909.859745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99151 -40.32606 -39.37653 -38.29464 -35.97065 -34.96613 -34.83687 -33.34737 -32.39520 -31.94854 -28.82425 -26.58579 -26.46058 -25.74332 -24.63203 -22.70446 -22.35877 -21.63184 -20.59916 -20.40368 -19.41645 -18.97691 -17.97528 -17.58592 -17.16427 -16.58654 -16.37936 -16.27258 -16.07963 -15.79772 -15.52845 -15.25266 -15.06518 -14.99951 -14.59073 -14.51350 -14.21089 -13.89732 -13.44969 -13.36259 -13.24391 -12.98325 -12.90017 -12.61558 -12.51594 -12.23560 -12.12830 -12.07513 -11.74608 -11.65890 -11.57360 -11.52684 -11.07266 -10.88464 -10.80325 -10.67700 -10.39831 -9.81308 -9.57358 -8.97794 -7.93343 -5.22323 1.46967 1.47372 1.51124 1.57132 2.02003 2.25438 2.40101 2.57694 3.32039 3.38045 3.64994 3.75686 3.77173 3.84421 3.88106 3.96580 4.07813 4.13719 4.24270 4.24731 4.35541 4.44676 4.50218 4.56160 4.62221 4.82385 4.83252 4.88293 4.96265 4.98314 5.02203 5.04820 5.12930 5.21309 5.22529 5.38082 5.44433 5.47924 5.50596 5.60341 5.75426 5.80821 6.02752 6.28284 6.73831 6.94181 7.33412 7.50262 7.76528 8.11325 8.34067 9.30208 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.002211 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.457772 B =12661.800787 C =13258.098594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.976 3.024 4 H -0.298 1.298 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.146 3.854 11 C -0.148 4.148 12 C -0.094 4.094 13 C 0.152 3.848 14 N -0.718 5.718 15 C 0.516 3.484 16 O -0.558 6.558 17 C 0.149 3.851 18 H 0.120 0.880 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.135 4.135 22 C 0.107 3.893 23 N -0.618 5.618 24 C 0.683 3.317 25 N -0.850 5.850 26 O -0.607 6.607 27 C -0.140 4.140 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.410 0.590 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.410 0.590 46 H 0.416 0.584 47 H 0.076 0.924 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.537 -32.466 -13.402 36.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.805 3.195 4 H -0.225 1.225 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.037 3.963 11 C -0.189 4.189 12 C -0.113 4.113 13 C 0.027 3.973 14 N -0.372 5.372 15 C 0.302 3.698 16 O -0.435 6.435 17 C 0.042 3.958 18 H 0.137 0.863 19 C -0.162 4.162 20 C -0.149 4.149 21 C -0.173 4.173 22 C -0.014 4.014 23 N -0.359 5.359 24 C 0.382 3.618 25 N -0.422 5.422 26 O -0.486 6.486 27 C -0.179 4.179 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.247 0.753 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.243 0.757 46 H 0.248 0.752 47 H 0.094 0.906 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.572 -31.763 -12.882 35.587 hybrid contribution -0.440 0.879 0.312 1.032 sum 9.131 -30.884 -12.569 34.571 Atomic orbital electron populations 1.69832 1.06822 1.26099 1.59724 1.25647 0.96389 1.01401 1.03930 0.85167 0.77112 0.78926 0.78298 1.22473 1.20210 1.20181 1.19720 0.91653 0.85298 1.40804 0.90128 1.42646 1.05323 1.01278 1.87534 1.21936 0.95563 0.83686 0.95119 1.23689 1.01163 0.95579 0.98464 1.22457 0.99182 0.93037 0.96665 1.20958 0.94610 0.90971 0.90715 1.45744 1.13358 1.35536 1.42553 1.20552 0.87529 0.80328 0.81355 1.90672 1.18667 1.69109 1.65037 1.21090 1.00957 0.80261 0.93512 0.86268 1.21866 0.99974 1.01797 0.92540 1.21512 1.02105 0.93374 0.97949 1.21956 1.00873 0.97887 0.96615 1.22046 1.00531 0.89871 0.88921 1.47118 1.63799 1.06176 1.18766 1.16452 0.78825 0.84108 0.82391 1.42970 1.60716 1.05896 1.32668 1.91210 1.53082 1.47958 1.56324 1.23345 0.99782 0.96346 0.98467 0.94118 0.79778 0.89818 0.92759 0.90855 0.86278 0.93833 0.94373 0.75348 0.93688 0.89753 0.90424 0.89172 0.93260 0.87489 0.88244 0.88322 0.75664 0.75176 0.90561 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 2 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 3 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 4 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.24 -13.75 9.97 84.03 0.84 -12.91 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.73 -38.26 5.40 -320.44 -1.73 -39.99 16 10 C 0.15 5.84 4.48 45.52 0.20 6.05 16 11 C -0.15 -5.04 7.43 31.12 0.23 -4.81 16 12 C -0.09 -2.69 3.75 -10.26 -0.04 -2.73 16 13 C 0.15 4.82 5.51 86.38 0.48 5.29 16 14 N -0.72 -18.88 5.56 -463.06 -2.57 -21.45 16 15 C 0.52 15.27 4.81 87.66 0.42 15.69 16 16 O -0.56 -22.89 13.90 21.44 0.30 -22.59 16 17 C 0.15 2.76 3.31 44.23 0.15 2.90 16 18 H 0.12 1.36 7.92 -2.39 -0.02 1.34 16 19 C -0.12 -1.97 5.33 30.67 0.16 -1.81 16 20 C -0.11 -0.87 5.88 30.62 0.18 -0.69 16 21 C -0.14 -0.81 6.08 30.67 0.19 -0.62 16 22 C 0.11 0.64 6.35 86.36 0.55 1.19 16 23 N -0.62 -10.22 2.97 -817.08 -2.43 -12.65 16 24 C 0.68 15.99 8.40 179.06 1.50 17.50 16 25 N -0.85 -11.17 8.74 -184.75 -1.61 -12.78 16 26 O -0.61 -21.81 12.28 20.49 0.25 -21.56 16 27 C -0.14 -4.82 7.39 31.12 0.23 -4.59 16 28 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.37 21.21 7.92 -92.71 -0.73 20.47 16 30 H 0.08 3.18 8.10 -2.38 -0.02 3.16 16 31 H 0.05 2.12 7.90 -2.38 -0.02 2.10 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.40 7.84 -2.39 -0.02 1.39 16 36 H 0.41 7.66 8.32 -92.71 -0.77 6.88 16 37 H 0.04 1.03 8.01 -2.39 -0.02 1.01 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.10 0.18 5.73 -2.39 -0.01 0.16 16 44 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.41 2.02 6.41 -92.71 -0.59 1.43 16 46 H 0.42 5.26 8.93 -92.71 -0.83 4.43 16 47 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 Total: -1.00 -88.11 379.70 -1.85 -89.97 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -1.92 Total: 37.46 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.56 Total: 16.10 kcal Atomic # 7 Polarization: -140.25 SS G_CDS: -8.06 Total: -148.31 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: 0.55 Total: -44.15 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -88.11 -1.85 -89.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091318708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.938 kcal (2) G-P(sol) polarization free energy of solvation -88.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds