Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99531 * 2 1 4 4 H 1.48496 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47289 * 299.99786 * 3 2 1 6 6 H 1.48497 * 109.47189 * 59.99750 * 3 2 1 7 7 C 1.38945 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99958 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99910 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00379 * 0.02562 * 10 9 7 12 12 C 1.50707 * 120.00314 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47302 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00090 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47226 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47121 * 180.02562 * 15 14 13 17 17 C 1.34767 * 120.00071 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00366 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00145 * 179.97438 * 17 16 15 20 20 C 1.54136 * 110.75025 * 206.01140 * 19 17 16 21 21 C 1.55167 * 102.88651 * 98.16228 * 20 19 17 22 22 C 1.54839 * 101.65616 * 36.15655 * 21 20 19 23 23 N 1.47860 * 111.38143 * 325.29591 * 19 17 16 24 24 C 1.47955 * 108.37129 * 120.68565 * 23 19 17 25 25 C 1.54838 * 105.06727 * 337.18331 * 24 23 19 26 26 C 1.54138 * 110.74328 * 84.57230 * 19 17 16 27 27 H 0.96999 * 120.00280 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00252 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46953 * 60.00203 * 12 10 9 30 30 H 1.09005 * 109.46589 * 300.00495 * 12 10 9 31 31 H 1.00896 * 111.00362 * 56.04540 * 13 12 10 32 32 H 1.09003 * 109.46717 * 59.99872 * 14 13 12 33 33 H 1.08999 * 109.47002 * 299.99898 * 14 13 12 34 34 H 1.09006 * 109.46651 * 60.00139 * 15 14 13 35 35 H 1.09000 * 109.47016 * 300.00476 * 15 14 13 36 36 H 0.97001 * 119.99695 * 0.02562 * 16 15 14 37 37 H 1.08998 * 110.72897 * 339.81954 * 20 19 17 38 38 H 1.08992 * 110.73658 * 216.50984 * 20 19 17 39 39 H 1.08996 * 110.99289 * 154.25063 * 21 20 19 40 40 H 1.09007 * 110.98542 * 278.06801 * 21 20 19 41 41 H 1.09001 * 110.32292 * 82.22949 * 22 21 20 42 42 H 1.08999 * 110.32238 * 204.43614 * 22 21 20 43 43 H 1.09008 * 110.31806 * 218.28753 * 24 23 19 44 44 H 1.08998 * 110.40931 * 96.13165 * 24 23 19 45 45 H 1.08995 * 110.98861 * 278.58014 * 25 24 23 46 46 H 1.09003 * 110.98607 * 154.76795 * 25 24 23 47 47 H 1.08997 * 110.73153 * 20.19181 * 26 19 17 48 48 H 1.09007 * 110.73010 * 143.48855 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3905 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1987 -5.9794 0.0007 14 6 1.4985 -7.2708 0.0008 15 6 2.5235 -8.4067 0.0009 16 7 1.8252 -9.6946 0.0003 17 6 2.5300 -10.8433 0.0009 18 8 3.7424 -10.8109 0.0013 19 6 1.8117 -12.1681 0.0009 20 6 2.6899 -13.2654 0.6336 21 6 2.1535 -13.3425 2.0876 22 6 0.6393 -13.0979 1.8757 23 7 0.5594 -12.1023 0.7843 24 6 -0.5687 -12.4430 -0.1103 25 6 -0.0528 -12.1461 -1.5397 26 6 1.4322 -12.5833 -1.4341 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3906 -0.0002 29 1 0.6178 -4.9205 -0.8903 30 1 0.6170 -4.9208 0.8897 31 1 2.8330 -5.9123 0.7825 32 1 0.8740 -7.3455 -0.8895 33 1 0.8732 -7.3450 0.8905 34 1 3.1483 -8.3321 0.8910 35 1 3.1485 -8.3322 -0.8890 36 1 0.8555 -9.7205 -0.0004 37 1 3.7397 -12.9722 0.6248 38 1 2.5494 -14.2162 0.1197 39 1 2.3335 -14.3273 2.5185 40 1 2.5923 -12.5606 2.7075 41 1 0.1440 -14.0231 1.5812 42 1 0.1893 -12.6996 2.7851 43 1 -1.4337 -11.8198 0.1171 44 1 -0.8265 -13.4975 -0.0122 45 1 -0.1316 -11.0838 -1.7704 46 1 -0.5846 -12.7451 -2.2790 47 1 2.0435 -12.0525 -2.1639 48 1 1.5268 -13.6618 -1.5615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130805607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = -65.355479 kcal Electronic energy + Delta-G solvation = -27247.250644 eV Core-core repulsion = 23336.596207 eV Total energy + Delta-G solvation = -3910.654436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29221 -38.75419 -38.26299 -36.25115 -34.61711 -34.11767 -33.65723 -31.81127 -31.22408 -29.65072 -28.43447 -26.03961 -25.90632 -24.05031 -22.66293 -22.01465 -21.77159 -21.17828 -19.52201 -19.24077 -17.90897 -17.71857 -16.61678 -16.20312 -16.01846 -15.76159 -15.42391 -15.06568 -14.67964 -14.57166 -14.42196 -14.11810 -13.85926 -13.82937 -13.52645 -13.28283 -13.10862 -12.85395 -12.52300 -12.34253 -12.04276 -11.93227 -11.88297 -11.57427 -11.50819 -11.44223 -11.40067 -11.36060 -11.25554 -11.03723 -10.84819 -10.33259 -10.21834 -10.07673 -9.51353 -9.10165 -8.98186 -8.47962 -8.09775 -7.95479 -6.41117 -3.81792 2.45322 2.99631 3.17313 3.27928 3.35654 3.41527 3.91284 3.99608 4.00460 4.14875 4.29177 4.42476 4.49194 4.55241 4.66335 4.70694 4.87725 4.93325 5.03143 5.04903 5.10134 5.21313 5.22415 5.28069 5.30999 5.38668 5.42764 5.45831 5.50187 5.53782 5.64879 5.70525 5.75872 5.80963 5.90571 5.94801 5.99040 6.23514 6.25981 6.38600 6.42562 7.14157 7.44986 7.56431 7.60843 8.07297 8.14956 8.61922 9.18793 9.54876 10.06315 10.76713 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.001843 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.726364 B =15190.331287 C =15511.122061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.119 3.881 16 N -0.712 5.712 17 C 0.542 3.458 18 O -0.543 6.543 19 C 0.069 3.931 20 C -0.127 4.127 21 C -0.133 4.133 22 C 0.035 3.965 23 N -0.506 5.506 24 C 0.031 3.969 25 C -0.135 4.135 26 C -0.126 4.126 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.352 0.648 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.405 0.595 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 -29.910 0.786 30.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.005 4.005 16 N -0.363 5.363 17 C 0.326 3.674 18 O -0.420 6.420 19 C -0.024 4.024 20 C -0.165 4.165 21 C -0.171 4.171 22 C -0.092 4.092 23 N -0.231 5.231 24 C -0.097 4.097 25 C -0.173 4.173 26 C -0.165 4.165 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.172 0.828 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.215 -29.126 0.342 29.431 hybrid contribution -1.093 0.075 0.587 1.243 sum -5.308 -29.051 0.929 29.546 Atomic orbital electron populations 1.69619 1.05935 1.28044 1.50769 1.25269 0.95654 0.99750 0.97368 0.85792 0.79740 0.81094 0.77677 1.19192 1.20748 1.20788 1.19761 0.93427 0.82201 1.47369 0.87833 1.41862 1.09201 1.04598 1.64419 1.19793 0.88396 0.84709 0.84521 1.90535 1.13736 1.87036 1.55264 1.21668 0.94237 0.90804 1.01323 1.59946 1.18873 0.99489 1.51559 1.22065 0.95571 0.89340 1.00984 1.21290 0.94969 0.81028 1.03242 1.45776 1.10771 1.05317 1.74448 1.19912 0.87109 0.84930 0.75404 1.90710 1.13744 1.87285 1.50231 1.22391 0.91473 0.93675 0.94858 1.22842 1.01460 0.96853 0.95382 1.22797 0.94881 1.02519 0.96943 1.23301 0.96899 0.93631 0.95414 1.65273 1.01448 1.46974 1.09385 1.23363 0.94614 1.00172 0.91540 1.22843 0.95044 1.02575 0.96857 1.22861 0.96943 1.02027 0.94666 0.91939 0.77456 0.89483 0.93719 0.82840 0.90595 0.94857 0.91473 0.90337 0.76030 0.88650 0.90548 0.90397 0.90504 0.92747 0.89716 0.89484 0.92663 0.90297 0.90096 0.90107 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 10 C 0.44 10.49 7.82 -10.98 -0.09 10.41 16 11 O -0.58 -16.04 15.78 5.54 0.09 -15.95 16 12 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 13 N -0.67 -10.83 6.13 -115.05 -0.70 -11.53 16 14 C 0.05 0.61 5.80 -3.82 -0.02 0.59 16 15 C 0.12 1.46 5.93 -4.04 -0.02 1.43 16 16 N -0.71 -7.57 5.48 -60.30 -0.33 -7.90 16 17 C 0.54 6.45 6.68 -10.99 -0.07 6.38 16 18 O -0.54 -8.52 15.66 5.56 0.09 -8.44 16 19 C 0.07 0.59 0.91 -131.04 -0.12 0.47 16 20 C -0.13 -1.02 5.99 -24.99 -0.15 -1.17 16 21 C -0.13 -0.93 7.07 -24.61 -0.17 -1.10 16 22 C 0.04 0.22 6.72 -2.27 -0.02 0.21 16 23 N -0.51 -3.70 4.79 -214.06 -1.03 -4.72 16 24 C 0.03 0.17 6.72 -2.27 -0.02 0.15 16 25 C -0.14 -0.72 7.07 -24.62 -0.17 -0.90 16 26 C -0.13 -0.86 6.03 -24.99 -0.15 -1.02 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 28 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 3.56 7.92 -40.82 -0.32 3.24 16 37 H 0.09 0.97 6.85 -51.93 -0.36 0.61 16 38 H 0.08 0.49 7.30 -51.93 -0.38 0.11 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.28 7.08 -51.93 -0.37 -0.09 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.06 0.26 7.08 -51.93 -0.37 -0.11 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.64 7.84 -51.93 -0.41 0.23 16 48 H 0.08 0.46 7.30 -51.93 -0.38 0.08 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -33.41 386.01 -9.52 -42.93 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -7.82 Total: 13.68 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.28 Total: 8.29 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.39 Total: -62.49 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.41 -9.52 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130805607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.427 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds