Wall clock time and date at job start Tue Mar 31 2020 04:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99928 * 2 1 4 4 H 1.09000 * 109.46951 * 30.00524 * 3 2 1 5 5 C 1.53000 * 109.47321 * 270.00311 * 3 2 1 6 6 C 1.50706 * 109.46864 * 150.00148 * 3 2 1 7 7 O 1.21280 * 119.99675 * 12.56349 * 6 3 2 8 8 N 1.34773 * 119.99975 * 192.56352 * 6 3 2 9 9 C 1.47142 * 125.60500 * 355.09621 * 8 6 3 10 10 C 1.54590 * 107.32690 * 179.04231 * 9 8 6 11 11 C 1.53710 * 102.78354 * 339.11661 * 10 9 8 12 12 C 1.53208 * 111.54209 * 153.97313 * 11 10 9 13 13 C 1.54802 * 101.38797 * 145.81657 * 12 11 10 14 14 N 1.46921 * 105.54156 * 335.83091 * 13 12 11 15 15 C 1.46499 * 124.37639 * 196.74281 * 14 13 12 16 16 C 1.52993 * 109.47308 * 90.00201 * 15 14 13 17 17 C 1.50699 * 109.47380 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00121 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00082 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47309 * 269.99803 * 21 19 17 23 23 H 1.48500 * 109.47331 * 30.00022 * 21 19 17 24 24 H 1.48508 * 109.47403 * 150.00077 * 21 19 17 25 25 C 1.34888 * 111.24556 * 17.01425 * 14 13 12 26 26 O 1.21287 * 125.22149 * 178.49307 * 25 14 13 27 27 C 1.47697 * 125.61076 * 175.06915 * 8 6 3 28 28 H 1.09000 * 109.46965 * 299.99178 * 1 2 3 29 29 H 1.09001 * 109.47309 * 59.99851 * 1 2 3 30 30 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46730 * 64.75291 * 5 3 2 32 32 H 1.09002 * 109.46505 * 184.75317 * 5 3 2 33 33 H 1.08998 * 109.46916 * 304.75132 * 5 3 2 34 34 H 1.09003 * 109.87203 * 298.46722 * 9 8 6 35 35 H 1.08989 * 109.87544 * 59.60455 * 9 8 6 36 36 H 1.09001 * 110.74635 * 220.79439 * 10 9 8 37 37 H 1.08997 * 110.75059 * 97.44213 * 10 9 8 38 38 H 1.09003 * 111.04033 * 27.78699 * 12 11 10 39 39 H 1.09003 * 111.04160 * 263.84454 * 12 11 10 40 40 H 1.09004 * 110.22670 * 216.81204 * 13 12 11 41 41 H 1.08996 * 110.30367 * 94.89051 * 13 12 11 42 42 H 1.09000 * 109.47505 * 330.00001 * 15 14 13 43 43 H 1.09001 * 109.47396 * 210.00382 * 15 14 13 44 44 H 1.09003 * 109.46882 * 60.00252 * 16 15 14 45 45 H 1.09001 * 109.47040 * 300.00399 * 16 15 14 46 46 H 0.97005 * 120.00489 * 179.97438 * 20 19 17 47 47 H 1.09004 * 110.38892 * 83.81769 * 27 8 6 48 48 H 1.09003 * 110.48847 * 321.48217 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.8547 0.1973 0.9692 8 7 3.9532 2.4118 1.0581 9 6 3.4926 3.7672 0.7177 10 6 4.4935 4.7647 1.3446 11 6 5.1632 3.9274 2.4461 12 6 6.5700 4.4423 2.7671 13 6 6.6583 4.1628 4.2871 14 7 5.2685 4.1280 4.7624 15 6 4.8719 4.2415 6.1681 16 6 4.6502 5.7142 6.5182 17 6 4.2416 5.8310 7.9640 18 1 4.1497 4.9435 8.5725 19 6 3.9852 7.0707 8.5100 20 7 4.0966 8.1515 7.7689 21 14 3.4794 7.2155 10.3024 22 1 2.0000 7.1387 10.4071 23 1 4.0889 6.1067 11.0798 24 1 3.9471 8.5162 10.8453 25 6 4.4053 3.9721 3.7377 26 8 3.2003 3.8847 3.8452 27 6 5.1994 2.5164 1.8439 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2496 1.8826 -1.9310 32 1 2.7374 2.7296 -1.4435 33 1 2.8136 1.0342 -1.9803 34 1 3.4748 3.8915 -0.3651 35 1 2.4968 3.9342 1.1281 36 1 3.9698 5.6190 1.7735 37 1 5.2271 5.0905 0.6073 38 1 6.6530 5.5093 2.5599 39 1 7.3269 3.8793 2.2211 40 1 7.2074 4.9615 4.7859 41 1 7.1426 3.2032 4.4677 42 1 5.6584 3.8318 6.8018 43 1 3.9481 3.6863 6.3310 44 1 3.8635 6.1239 5.8845 45 1 5.5740 6.2694 6.3553 46 1 3.9158 9.0238 8.1529 47 1 6.0680 2.4025 1.1954 48 1 5.2158 1.7664 2.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269775310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:02 Heat of formation + Delta-G solvation = -108.449851 kcal Electronic energy + Delta-G solvation = -28660.270938 eV Core-core repulsion = 24715.455038 eV Total energy + Delta-G solvation = -3944.815900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25670 -39.77331 -37.89055 -36.85479 -36.06865 -33.98404 -32.75003 -31.68740 -30.51798 -29.15411 -28.10806 -27.06741 -25.69527 -24.93227 -23.44517 -22.71138 -21.92298 -20.47735 -19.73750 -18.74741 -17.63204 -16.87605 -16.70703 -16.18309 -15.86692 -15.59067 -15.56867 -15.40402 -14.86489 -14.46297 -14.19189 -14.05543 -13.81439 -13.43028 -13.25408 -13.11391 -12.98558 -12.78084 -12.64339 -12.54376 -12.37526 -12.18455 -12.03064 -11.98826 -11.63388 -11.35097 -11.32400 -11.05568 -10.95509 -10.87753 -10.71538 -10.22745 -10.03481 -9.90972 -9.63851 -9.39545 -9.15248 -8.78293 -8.40984 -8.06606 -6.06353 -4.09747 2.44236 2.57796 2.86692 3.29472 3.35182 3.37689 3.48073 3.65279 4.12672 4.19903 4.27885 4.42530 4.46942 4.62913 4.69373 4.75135 4.85055 4.99041 5.02291 5.12283 5.13934 5.24345 5.30074 5.30263 5.37254 5.39864 5.43809 5.46720 5.56308 5.65153 5.68297 5.78107 5.80496 5.85059 5.98009 6.00948 6.07347 6.43513 6.76306 6.77476 6.93926 7.32890 7.44107 7.62006 7.79457 7.93020 8.04406 8.29479 8.59786 8.96803 9.54614 11.05020 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.002853 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.860512 B = 9811.673642 C =10545.340406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.074 3.926 4 H 0.088 0.912 5 C -0.172 4.172 6 C 0.534 3.466 7 O -0.522 6.522 8 N -0.613 5.613 9 C 0.098 3.902 10 C -0.106 4.106 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.099 3.901 14 N -0.611 5.611 15 C 0.128 3.872 16 C 0.014 3.986 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.273 1.273 24 H -0.286 1.286 25 C 0.529 3.471 26 O -0.522 6.522 27 C 0.137 3.863 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.020 0.980 45 H 0.017 0.983 46 H 0.261 0.739 47 H 0.081 0.919 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -8.366 -20.180 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.012 3.988 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.322 3.678 7 O -0.397 6.397 8 N -0.349 5.349 9 C -0.024 4.024 10 C -0.144 4.144 11 C -0.119 4.119 12 C -0.155 4.155 13 C -0.025 4.025 14 N -0.344 5.344 15 C 0.008 3.992 16 C -0.024 4.024 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.198 1.198 24 H -0.212 1.212 25 C 0.314 3.686 26 O -0.398 6.398 27 C 0.015 3.985 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.099 0.901 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.165 -9.066 -19.889 21.889 hybrid contribution -0.488 0.614 1.129 1.375 sum 0.677 -8.453 -18.760 20.588 Atomic orbital electron populations 1.22895 0.80493 1.03248 1.00205 1.88030 1.19771 1.25164 1.94957 1.21869 0.93322 0.86877 0.96712 0.89457 1.22279 1.03403 1.02371 0.94904 1.19983 0.86094 0.82629 0.79120 1.90714 1.65889 1.28790 1.54307 1.48397 1.26117 1.05793 1.54558 1.22274 0.99521 0.81142 0.99514 1.22396 0.98065 0.97674 0.96269 1.21617 0.97677 0.96973 0.95675 1.22470 0.94277 1.02888 0.95832 1.22132 0.84217 1.02162 0.93947 1.48677 1.06475 1.71056 1.08165 1.21816 0.99596 1.01402 0.76421 1.19389 0.97359 0.89058 0.96612 1.21090 1.46739 0.92768 0.95574 0.92478 1.24992 0.95341 0.95830 0.98056 1.69968 1.49128 0.98024 1.36074 0.86552 0.78925 0.77439 0.84843 1.20567 1.19788 1.21174 1.19883 0.86801 0.76416 0.85491 1.90691 1.13009 1.50304 1.85800 1.21867 0.86935 0.94961 0.94765 0.93589 0.93828 0.89118 0.91151 0.90630 0.90996 0.90845 0.90405 0.88943 0.89326 0.89074 0.88986 0.89819 0.91396 0.91559 0.91169 0.96188 0.96437 0.92922 0.90090 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.70 9.91 -54.82 -0.54 -5.25 16 3 C 0.07 0.84 2.53 -27.88 -0.07 0.77 16 4 H 0.09 0.89 7.48 -51.93 -0.39 0.50 16 5 C -0.17 -1.39 9.44 37.16 0.35 -1.04 16 6 C 0.53 7.79 7.17 -10.98 -0.08 7.71 16 7 O -0.52 -9.71 16.86 -14.03 -0.24 -9.95 16 8 N -0.61 -7.74 3.34 -170.94 -0.57 -8.31 16 9 C 0.10 0.98 5.81 -2.86 -0.02 0.96 16 10 C -0.11 -1.05 5.81 -25.53 -0.15 -1.20 16 11 C -0.12 -1.40 0.68 -155.37 -0.11 -1.50 16 12 C -0.12 -1.11 6.27 -25.67 -0.16 -1.27 16 13 C 0.10 1.23 7.37 -2.86 -0.02 1.21 16 14 N -0.61 -10.72 2.95 -172.57 -0.51 -11.23 16 15 C 0.13 2.67 5.89 -4.05 -0.02 2.65 16 16 C 0.01 0.35 5.30 -27.89 -0.15 0.20 16 17 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.53 9.36 6.77 -11.36 -0.08 9.28 16 26 O -0.52 -11.31 17.26 5.55 0.10 -11.22 16 27 C 0.14 1.67 5.87 -3.15 -0.02 1.65 16 28 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.04 0.29 7.98 -51.93 -0.41 -0.12 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.45 7.98 -51.93 -0.41 0.03 16 32 H 0.07 0.50 5.52 -51.93 -0.29 0.21 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.51 6.03 -51.93 -0.31 0.20 16 35 H 0.08 0.86 7.94 -51.94 -0.41 0.45 16 36 H 0.09 1.04 8.01 -51.93 -0.42 0.63 16 37 H 0.09 0.61 8.04 -51.93 -0.42 0.20 16 38 H 0.09 0.81 7.96 -51.93 -0.41 0.39 16 39 H 0.09 0.61 7.63 -51.93 -0.40 0.21 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 48 H 0.08 1.15 7.98 -51.93 -0.41 0.74 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -37.23 388.12 -8.06 -45.28 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -8.02 Total: -3.18 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 0.16 Total: 7.36 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.34 Total: -45.43 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.68 Total: -26.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.23 -8.06 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269775310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.165 kcal (2) G-P(sol) polarization free energy of solvation -37.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds