Wall clock time and date at job start Tue Mar 31 2020 04:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00301 * 2 1 4 4 H 1.48498 * 109.46719 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.46787 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47104 * 119.99935 * 3 2 1 7 7 C 1.38950 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00235 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99681 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99915 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99901 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.34772 * 120.00134 * 179.97438 * 13 12 10 15 15 O 1.21366 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.49349 * 120.00447 * 179.97438 * 14 13 12 17 17 O 1.21376 * 119.99891 * 0.02562 * 16 14 13 18 18 N 1.34772 * 120.00447 * 179.97438 * 16 14 13 19 19 C 1.39766 * 120.00280 * 185.28184 * 18 16 14 20 20 C 1.38921 * 120.06081 * 213.61612 * 19 18 16 21 21 C 1.38093 * 119.93891 * 180.23376 * 20 19 18 22 22 C 1.38404 * 120.05668 * 359.51029 * 21 20 19 23 23 Cl 1.73601 * 119.93544 * 180.25421 * 22 21 20 24 24 C 1.38398 * 120.12830 * 0.24020 * 22 21 20 25 25 C 1.38091 * 120.06235 * 359.97438 * 24 22 21 26 26 H 0.96999 * 120.00015 * 0.02562 * 1 2 3 27 27 H 0.96993 * 120.00192 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47016 * 59.99594 * 12 10 9 29 29 H 1.09000 * 109.46600 * 299.99283 * 12 10 9 30 30 H 0.97005 * 120.00278 * 359.97438 * 13 12 10 31 31 H 0.97002 * 119.99602 * 5.27669 * 18 16 14 32 32 H 1.08005 * 120.03385 * 359.97438 * 20 19 18 33 33 H 1.07990 * 119.97247 * 179.79370 * 21 20 19 34 34 H 1.07997 * 119.97303 * 180.02562 * 24 22 21 35 35 H 1.07994 * 120.03417 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0010 13 7 2.1956 -5.9765 0.0030 14 6 1.7464 -7.2471 0.0034 15 8 0.5532 -7.4689 0.0016 16 6 2.7168 -8.3823 0.0048 17 8 3.9102 -8.1606 0.0061 18 7 2.2676 -9.6530 0.0057 19 6 3.1709 -10.7135 0.1185 20 6 2.9197 -11.9140 -0.5340 21 6 3.8115 -12.9618 -0.4170 22 6 4.9598 -12.8134 0.3413 23 17 6.0820 -14.1305 0.4810 24 6 5.2152 -11.6169 0.9883 25 6 4.3247 -10.5672 0.8783 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6180 -4.9209 -0.8897 29 1 0.6161 -4.9205 0.8904 30 1 3.1493 -5.7993 0.0040 31 1 1.3173 -9.8315 -0.0718 32 1 2.0256 -12.0291 -1.1289 33 1 3.6151 -13.8963 -0.9212 34 1 6.1122 -11.5037 1.5790 35 1 4.5247 -9.6336 1.3830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344126074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:13 Heat of formation + Delta-G solvation = -81.387043 kcal Electronic energy + Delta-G solvation = -23193.191409 eV Core-core repulsion = 19217.333011 eV Total energy + Delta-G solvation = -3975.858398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28654 -39.73934 -38.65464 -38.06531 -36.85622 -35.38198 -34.49046 -33.79205 -31.51460 -31.46117 -30.00678 -28.31482 -25.40613 -24.23789 -23.46393 -22.19394 -20.43424 -19.85377 -18.97297 -18.21429 -17.81877 -17.18106 -16.59664 -16.29930 -15.69634 -15.48301 -15.30165 -14.85814 -14.67566 -14.49945 -14.14307 -13.96064 -13.91537 -13.58500 -13.50874 -12.78150 -12.34029 -12.32169 -12.10871 -11.93279 -11.76878 -11.66602 -11.20310 -11.14685 -10.58365 -10.54316 -10.36382 -9.83451 -9.68843 -9.45433 -9.17601 -8.73572 -8.51312 -8.17029 -6.57381 -3.99623 0.53061 0.87824 1.33830 1.77292 2.08231 2.96760 3.10243 3.18960 3.22378 3.29433 3.41802 3.64850 4.05034 4.29672 4.40313 4.45614 4.72392 4.80969 4.92560 5.03130 5.10259 5.46143 5.54899 5.65959 5.75366 5.77149 5.84174 5.90620 5.91422 6.26640 6.38822 6.68339 7.23633 7.40800 7.53982 7.81977 7.93778 8.37433 8.98283 9.30891 9.78545 10.59139 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.037305 B = 0.001851 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.382466 B =15124.454164 C =15776.578992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.424 3.576 11 O -0.593 6.593 12 C 0.106 3.894 13 N -0.668 5.668 14 C 0.507 3.493 15 O -0.527 6.527 16 C 0.512 3.488 17 O -0.489 6.489 18 N -0.649 5.649 19 C 0.153 3.847 20 C -0.130 4.130 21 C -0.090 4.090 22 C -0.051 4.051 23 Cl -0.072 7.072 24 C -0.088 4.088 25 C -0.109 4.109 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.424 0.576 31 H 0.425 0.575 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -24.688 0.477 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.209 3.791 11 O -0.479 6.479 12 C -0.021 4.021 13 N -0.323 5.323 14 C 0.286 3.714 15 O -0.404 6.404 16 C 0.294 3.706 17 O -0.361 6.361 18 N -0.296 5.296 19 C 0.058 3.942 20 C -0.150 4.150 21 C -0.109 4.109 22 C -0.078 4.078 23 Cl -0.043 7.043 24 C -0.107 4.107 25 C -0.129 4.129 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.265 0.735 31 H 0.264 0.736 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.724 -24.484 0.499 24.771 hybrid contribution -0.224 0.757 -0.066 0.792 sum 3.500 -23.728 0.433 23.988 Atomic orbital electron populations 1.69598 1.06024 1.28753 1.48954 1.25336 0.95686 0.99993 0.96595 0.85852 0.78784 0.80001 0.79237 1.19720 1.20822 1.19714 1.19702 0.93509 0.81897 1.48492 0.87609 1.41765 1.09478 1.04393 1.62358 1.19615 0.88324 0.84846 0.86298 1.90539 1.13542 1.86597 1.57240 1.21154 0.91581 0.85429 1.03979 1.45511 1.13184 1.03745 1.69867 1.19623 0.88193 0.84086 0.79523 1.90777 1.15619 1.84632 1.49391 1.20421 0.89042 0.84020 0.77155 1.90825 1.16053 1.84366 1.44892 1.43175 1.11440 1.03855 1.71148 1.17812 0.91959 0.87769 0.96627 1.20887 1.01355 0.92310 1.00468 1.20836 0.92391 0.99445 0.98240 1.20940 0.93497 0.90370 1.02985 1.98373 1.61379 1.47478 1.97119 1.20966 0.99971 0.90798 0.98966 1.21190 0.93632 0.99876 0.98209 0.91458 0.76993 0.88975 0.88982 0.73515 0.73608 0.84335 0.84371 0.84343 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.21 13.05 55.50 0.72 -22.49 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.17 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.11 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.03 5.29 -10.96 -0.06 -13.08 16 10 C 0.42 9.36 7.85 -10.98 -0.09 9.27 16 11 O -0.59 -14.97 15.24 5.55 0.08 -14.89 16 12 C 0.11 1.79 6.15 -5.20 -0.03 1.76 16 13 N -0.67 -10.73 5.52 -61.95 -0.34 -11.07 16 14 C 0.51 7.30 7.89 -11.63 -0.09 7.21 16 15 O -0.53 -8.08 16.48 5.48 0.09 -7.99 16 16 C 0.51 6.57 7.62 -11.63 -0.09 6.48 16 17 O -0.49 -7.30 14.16 5.47 0.08 -7.22 16 18 N -0.65 -6.40 5.32 -10.29 -0.05 -6.45 16 19 C 0.15 1.47 6.28 -83.73 -0.53 0.94 16 20 C -0.13 -0.97 9.96 -39.38 -0.39 -1.36 16 21 C -0.09 -0.66 9.82 -39.57 -0.39 -1.05 16 22 C -0.05 -0.43 6.32 -39.46 -0.25 -0.68 16 23 Cl -0.07 -0.58 28.95 -51.86 -1.50 -2.08 16 24 C -0.09 -0.78 9.82 -39.58 -0.39 -1.17 16 25 C -0.11 -1.11 8.65 -39.38 -0.34 -1.45 16 26 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.40 8.99 7.90 -40.82 -0.32 8.67 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.42 7.28 6.91 -40.82 -0.28 6.99 16 31 H 0.43 3.34 8.30 -40.82 -0.34 3.00 16 32 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.15 1.63 6.41 -52.49 -0.34 1.30 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -30.41 335.88 -6.67 -37.08 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -2.90 Total: 15.74 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: -2.82 Total: 12.25 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.27 Total: -53.10 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: 0.25 Total: -30.10 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.41 -6.67 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344126074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.306 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds