Wall clock time and date at job start Tue Mar 31 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34690 * 116.99998 * 2 1 4 4 O 1.21453 * 119.99721 * 0.02562 * 3 2 1 5 5 C 1.47903 * 120.00332 * 179.97438 * 3 2 1 6 6 C 1.39613 * 120.00623 * 179.97438 * 5 3 2 7 7 C 1.37798 * 119.99789 * 180.02562 * 6 5 3 8 8 C 1.39586 * 120.00401 * 0.02562 * 7 6 5 9 9 C 1.47978 * 120.00004 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99742 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00307 * 180.02562 * 9 8 7 12 12 C 1.39097 * 119.99805 * 184.01188 * 11 9 8 13 13 C 1.39525 * 119.83269 * 144.42423 * 12 11 9 14 14 C 1.36358 * 120.16333 * 179.76178 * 13 12 11 15 15 C 1.40890 * 119.82868 * 0.53378 * 14 13 12 16 16 C 1.41126 * 120.15649 * 179.69922 * 15 14 13 17 17 H 1.08002 * 119.99738 * 214.79929 * 16 15 14 18 18 C 1.39921 * 120.00250 * 34.79941 * 16 15 14 19 19 N 1.30862 * 119.99717 * 355.58069 * 18 16 15 20 20 Si 1.86793 * 120.00033 * 175.57777 * 18 16 15 21 21 H 1.48500 * 109.47306 * 90.00355 * 20 18 16 22 22 H 1.48502 * 109.47126 * 210.00030 * 20 18 16 23 23 H 1.48498 * 109.47136 * 329.99927 * 20 18 16 24 24 C 1.40881 * 119.68009 * 359.72099 * 15 14 13 25 25 C 1.36361 * 119.83128 * 0.02562 * 24 15 14 26 26 C 1.39589 * 120.00404 * 0.22860 * 8 7 6 27 27 C 1.37794 * 120.00530 * 359.49667 * 26 8 7 28 28 H 1.08997 * 109.47121 * 299.99821 * 1 2 3 29 29 H 1.08993 * 109.47084 * 60.00062 * 1 2 3 30 30 H 1.09004 * 109.46681 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.00077 * 359.97438 * 6 5 3 32 32 H 1.07999 * 119.99722 * 180.02562 * 7 6 5 33 33 H 0.96996 * 119.99414 * 4.28689 * 11 9 8 34 34 H 1.07998 * 119.91557 * 0.02562 * 13 12 11 35 35 H 1.07998 * 120.08257 * 180.26269 * 14 13 12 36 36 H 0.97005 * 119.99978 * 180.02562 * 19 18 16 37 37 H 1.07999 * 120.08326 * 179.97438 * 24 15 14 38 38 H 1.07996 * 119.91566 * 179.97438 * 25 24 15 39 39 H 1.08002 * 119.99915 * 179.72308 * 26 8 7 40 40 H 1.07997 * 120.00558 * 180.23139 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4020 2.2187 0.0005 5 6 3.5405 1.2776 0.0006 6 6 4.1744 2.5215 0.0000 7 6 5.5505 2.5935 0.0000 8 6 6.3107 1.4228 0.0000 9 6 7.7885 1.5003 -0.0005 10 8 8.3402 2.5833 -0.0015 11 7 8.5226 0.3699 -0.0011 12 6 9.9092 0.4412 0.0827 13 6 10.6126 -0.5326 0.7923 14 6 11.9724 -0.4720 0.8746 15 6 12.6659 0.5836 0.2504 16 6 14.0726 0.6566 0.3366 17 1 14.5609 1.6182 0.3941 18 6 14.8348 -0.5168 0.3475 19 7 14.2407 -1.6827 0.3651 20 14 16.7001 -0.4191 0.3368 21 1 17.2016 -0.3757 1.7339 22 1 17.2544 -1.6128 -0.3511 23 1 17.1273 0.8087 -0.3809 24 6 11.9483 1.5661 -0.4598 25 6 10.5891 1.4895 -0.5379 26 6 5.6770 0.1791 -0.0048 27 6 4.3010 0.1067 0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.5862 3.4274 -0.0012 32 1 6.0408 3.5558 0.0000 33 1 8.0841 -0.4930 -0.0639 34 1 10.0792 -1.3388 1.2739 35 1 12.5159 -1.2289 1.4206 36 1 14.7690 -2.4962 0.3731 37 1 12.4733 2.3784 -0.9404 38 1 10.0376 2.2422 -1.0816 39 1 6.2653 -0.7267 -0.0093 40 1 3.8108 -0.8556 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:44 Heat of formation + Delta-G solvation = -67.131155 kcal Electronic energy + Delta-G solvation = -25062.894966 eV Core-core repulsion = 21193.627943 eV Total energy + Delta-G solvation = -3869.267023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96780 -40.14399 -38.57796 -37.19378 -36.75651 -34.60888 -33.13533 -31.93838 -31.34317 -29.63204 -28.95789 -28.15459 -25.72327 -24.41851 -22.89339 -22.08909 -21.34787 -20.83541 -19.79496 -18.55891 -17.80065 -17.41216 -17.20154 -16.73346 -16.40032 -15.33045 -15.20618 -14.98814 -14.80156 -14.56174 -14.00643 -13.85935 -13.84318 -13.81193 -13.15232 -12.85754 -12.64109 -12.60788 -12.43065 -12.19053 -11.78318 -11.45790 -11.44752 -11.21343 -11.19512 -11.00226 -10.92947 -10.57030 -10.17418 -9.89945 -9.46267 -9.38951 -9.34597 -9.21295 -8.83932 -7.60350 -6.94705 -6.67459 -4.38588 0.07512 1.01637 1.96501 2.26175 2.58129 2.98751 3.04604 3.07549 3.10979 3.21430 3.48921 3.75280 3.94493 4.25191 4.46571 4.56430 4.64833 4.70680 4.78635 4.81981 4.96574 5.05751 5.12184 5.33178 5.60108 5.64967 5.77671 5.86390 6.00496 6.04632 6.14372 6.38059 6.41099 6.66570 6.85721 7.01349 7.14204 7.23857 7.32922 7.58983 7.66511 7.79089 8.01282 8.16428 8.25919 8.53797 8.62972 8.87753 8.94021 10.23681 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.041947 B = 0.001974 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.348429 B =14183.312981 C =14766.178056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.504 6.504 5 C -0.115 4.115 6 C -0.060 4.060 7 C -0.075 4.075 8 C -0.082 4.082 9 C 0.534 3.466 10 O -0.522 6.522 11 N -0.639 5.639 12 C -0.003 4.003 13 C -0.117 4.117 14 C -0.142 4.142 15 C 0.102 3.898 16 C -0.459 4.459 17 H 0.077 0.923 18 C 0.069 3.931 19 N -0.811 5.811 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.206 4.206 25 C -0.083 4.083 26 C -0.105 4.105 27 C -0.067 4.067 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.110 -1.689 -0.575 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.354 3.646 4 O -0.393 6.393 5 C -0.116 4.116 6 C -0.079 4.079 7 C -0.094 4.094 8 C -0.086 4.086 9 C 0.321 3.679 10 O -0.399 6.399 11 N -0.281 5.281 12 C -0.095 4.095 13 C -0.137 4.137 14 C -0.162 4.162 15 C 0.099 3.901 16 C -0.490 4.490 17 H 0.095 0.905 18 C -0.146 4.146 19 N -0.438 5.438 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.226 4.226 25 C -0.102 4.102 26 C -0.123 4.123 27 C -0.085 4.085 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.150 0.850 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.155 0.845 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.886 -0.890 -0.560 20.912 hybrid contribution 0.334 -0.571 -0.086 0.667 sum -20.552 -1.462 -0.647 20.614 Atomic orbital electron populations 1.23313 0.75708 1.03945 1.02748 1.86540 1.23765 1.32525 1.84230 1.21275 0.89122 0.81504 0.72654 1.90839 1.66754 1.36051 1.45629 1.19221 0.88906 0.95196 1.08291 1.21248 0.94292 0.96873 0.95449 1.21284 0.92526 0.99059 0.96553 1.20465 0.94016 0.94268 0.99836 1.18241 0.86085 0.84913 0.78635 1.90773 1.72205 1.27852 1.49116 1.42881 1.06375 1.08043 1.70822 1.17233 0.79867 1.02462 1.09939 1.20333 0.95246 0.98132 0.99983 1.21204 0.91473 1.01501 1.02003 1.17753 0.93413 0.90656 0.88250 1.19524 0.91458 0.93500 1.44472 0.90516 1.25894 1.01289 0.94911 0.92474 1.69755 1.37580 0.98515 1.37947 0.86180 0.81800 0.78792 0.79131 1.19487 1.20278 1.18687 1.20823 0.93100 1.02997 1.05679 1.20413 0.94199 0.97007 0.98613 1.21372 0.94555 0.97269 0.99145 1.21375 0.93446 0.98128 0.95593 0.91710 0.91707 0.87795 0.83863 0.83388 0.76921 0.89000 0.84954 0.91089 0.88484 0.87388 0.84486 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.11 9.80 -40.47 -0.40 -3.51 16 3 C 0.51 5.43 7.90 34.69 0.27 5.70 16 4 O -0.50 -6.47 16.12 -19.23 -0.31 -6.78 16 5 C -0.11 -1.17 5.88 -104.91 -0.62 -1.79 16 6 C -0.06 -0.63 9.58 -39.23 -0.38 -1.01 16 7 C -0.08 -0.89 9.58 -39.24 -0.38 -1.27 16 8 C -0.08 -1.05 5.88 -104.90 -0.62 -1.67 16 9 C 0.53 9.02 7.60 -12.27 -0.09 8.93 16 10 O -0.52 -10.77 13.75 5.32 0.07 -10.70 16 11 N -0.64 -10.77 5.24 -10.56 -0.06 -10.82 16 12 C 0.00 -0.06 6.30 -83.61 -0.53 -0.59 16 13 C -0.12 -2.58 9.90 -39.78 -0.39 -2.98 16 14 C -0.14 -3.56 8.61 -39.26 -0.34 -3.90 16 15 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 16 C -0.46 -12.05 9.02 -37.86 -0.34 -12.39 16 17 H 0.08 1.95 7.85 -52.49 -0.41 1.53 16 18 C 0.07 1.72 5.42 -17.33 -0.09 1.63 16 19 N -0.81 -20.50 10.59 55.55 0.59 -19.91 16 20 Si 0.92 18.65 29.56 -169.99 -5.03 13.62 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.21 -5.13 9.74 -39.26 -0.38 -5.51 16 25 C -0.08 -1.93 8.61 -39.78 -0.34 -2.28 16 26 C -0.10 -1.03 9.52 -39.24 -0.37 -1.40 16 27 C -0.07 -0.60 9.60 -39.23 -0.38 -0.97 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 1.35 7.64 -52.48 -0.40 0.95 16 32 H 0.15 1.75 7.64 -52.49 -0.40 1.34 16 33 H 0.40 5.13 6.85 -40.82 -0.28 4.85 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.13 3.43 6.13 -52.49 -0.32 3.11 16 36 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 37 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.11 2.49 6.22 -52.49 -0.33 2.17 16 39 H 0.14 1.04 6.39 -52.49 -0.34 0.71 16 40 H 0.14 0.96 7.60 -52.49 -0.40 0.56 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -31.23 350.82 -8.46 -39.69 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.12 Total: 9.25 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -4.50 Total: -16.12 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.53 Total: -30.73 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.63 Total: -20.99 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.23 -8.46 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.443 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds