Wall clock time and date at job start Tue Mar 31 2020 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38016 * 120.00027 * 2 1 4 4 C 1.38210 * 120.22502 * 180.23112 * 3 2 1 5 5 C 1.39018 * 120.23649 * 359.78692 * 4 3 2 6 6 N 1.39886 * 120.00186 * 179.97438 * 5 4 3 7 7 C 1.34774 * 119.99934 * 212.69568 * 6 5 4 8 8 O 1.21554 * 119.99998 * 4.82941 * 7 6 5 9 9 C 1.47850 * 119.99585 * 184.82874 * 7 6 5 10 10 C 1.39931 * 120.02920 * 359.72971 * 9 7 6 11 11 C 1.38328 * 120.35519 * 179.74127 * 10 9 7 12 12 C 1.37750 * 120.41745 * 0.55491 * 11 10 9 13 13 C 1.40756 * 120.03853 * 359.69960 * 12 11 10 14 14 C 1.41433 * 120.17578 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00547 * 333.83302 * 14 13 12 16 16 C 1.39948 * 120.00229 * 153.83231 * 14 13 12 17 17 N 1.30829 * 119.99415 * 341.76611 * 16 14 13 18 18 Si 1.86792 * 120.00127 * 161.76340 * 16 14 13 19 19 H 1.48491 * 109.47460 * 59.99998 * 18 16 14 20 20 H 1.48504 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47115 * 299.99948 * 18 16 14 22 22 C 1.39019 * 120.02573 * 179.97438 * 9 7 6 23 23 C 1.38600 * 120.00077 * 359.97232 * 5 4 3 24 24 C 1.39547 * 119.77096 * 0.02562 * 23 5 4 25 25 C 1.47750 * 120.11412 * 179.97438 * 24 23 5 26 26 O 1.21465 * 119.99677 * 173.50206 * 25 24 23 27 27 O 1.34707 * 120.00085 * 353.50062 * 25 24 23 28 28 H 1.09000 * 109.47470 * 262.68265 * 1 2 3 29 29 H 1.09001 * 109.47107 * 22.68598 * 1 2 3 30 30 H 1.08998 * 109.46796 * 142.68614 * 1 2 3 31 31 H 1.07996 * 119.88403 * 359.96783 * 3 2 1 32 32 H 1.08006 * 119.88426 * 179.75718 * 4 3 2 33 33 H 0.97001 * 119.99054 * 32.69423 * 6 5 4 34 34 H 1.07999 * 119.82479 * 0.02562 * 10 9 7 35 35 H 1.08003 * 119.79025 * 180.25232 * 11 10 9 36 36 H 1.07997 * 119.98472 * 179.72317 * 12 11 10 37 37 H 0.97001 * 119.99446 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.19625 * 359.96228 * 22 9 7 39 39 H 1.08003 * 120.11505 * 180.02562 * 23 5 4 40 40 H 0.96693 * 117.00076 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1953 0.0000 4 6 3.5792 1.2007 -0.0048 5 6 4.2839 0.0024 -0.0052 6 7 5.6828 0.0136 -0.0107 7 6 6.3620 -0.9644 -0.6419 8 8 5.7617 -1.8069 -1.2802 9 6 7.8374 -1.0125 -0.5580 10 6 8.5293 -0.0396 0.1720 11 6 9.9092 -0.0812 0.2594 12 6 10.6190 -1.0735 -0.3801 13 6 9.9407 -2.0578 -1.1234 14 6 10.6665 -3.0783 -1.7806 15 1 11.6888 -2.9051 -2.0828 16 6 10.0600 -4.3127 -2.0395 17 7 8.9827 -4.6623 -1.3846 18 14 10.7886 -5.4610 -3.3200 19 1 12.1769 -5.8178 -2.9324 20 1 9.9653 -6.6941 -3.4047 21 1 10.8022 -4.7838 -4.6416 22 6 8.5386 -2.0213 -1.2084 23 6 3.6007 -1.2035 -0.0002 24 6 2.2052 -1.2092 0.0047 25 6 1.4691 -2.4902 0.0095 26 8 0.2608 -2.4958 0.1328 27 8 2.1381 -3.6519 -0.1229 28 1 -0.3634 -0.1309 1.0193 29 1 -0.3633 0.9482 -0.3964 30 1 -0.3633 -0.8173 -0.6229 31 1 1.6552 2.1294 -0.0005 32 1 4.1136 2.1392 -0.0088 33 1 6.1637 0.7254 0.4399 34 1 7.9828 0.7453 0.6736 35 1 10.4337 0.6721 0.8286 36 1 11.6965 -1.0967 -0.3108 37 1 8.5626 -5.5180 -1.5638 38 1 8.0089 -2.7724 -1.7756 39 1 4.1463 -2.1355 -0.0001 40 1 1.6134 -4.4641 -0.1143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097228721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:48 Heat of formation + Delta-G solvation = -81.595484 kcal Electronic energy + Delta-G solvation = -26066.282011 eV Core-core repulsion = 22196.387767 eV Total energy + Delta-G solvation = -3869.894244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78244 -39.87812 -38.40577 -37.12237 -36.17704 -34.74820 -33.79813 -31.68491 -31.44961 -30.06724 -29.55208 -26.73429 -25.35980 -24.60382 -23.07906 -22.19765 -21.15479 -20.60005 -19.67015 -18.43468 -17.79840 -17.56253 -16.17945 -15.92216 -15.71100 -15.63315 -15.16357 -15.13069 -14.77313 -14.20089 -14.06764 -13.67046 -13.56860 -13.28635 -13.26201 -12.79470 -12.60505 -12.38293 -12.28050 -11.90151 -11.74013 -11.63054 -11.50379 -11.25233 -11.15570 -10.83893 -10.58967 -10.33786 -10.15069 -10.02544 -9.78978 -9.28241 -9.27475 -9.06141 -8.02226 -7.71540 -7.62207 -6.88441 -4.49449 0.62600 1.24855 2.04584 2.49838 2.73698 3.00082 3.03779 3.05310 3.10847 3.34998 3.54546 3.83525 3.87243 4.54024 4.64523 4.83425 4.91631 5.07608 5.30558 5.35319 5.48492 5.49279 5.64585 5.69448 5.87239 5.92613 5.97155 6.14700 6.15196 6.24612 6.38285 6.44907 6.57533 6.62078 6.85758 6.89895 6.99182 7.11494 7.26316 7.54115 7.61283 7.76700 7.88121 7.88893 8.07074 8.39868 8.62570 8.71924 8.74233 10.07335 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.003242 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.273677 B = 8635.522600 C =10240.648048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.045 4.045 3 C -0.115 4.115 4 C -0.112 4.112 5 C 0.144 3.856 6 N -0.678 5.678 7 C 0.564 3.436 8 O -0.521 6.521 9 C -0.130 4.130 10 C -0.219 4.219 11 C -0.095 4.095 12 C -0.209 4.209 13 C 0.100 3.900 14 C -0.460 4.460 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.782 5.782 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.087 4.087 23 C -0.062 4.062 24 C -0.116 4.116 25 C 0.530 3.470 26 O -0.516 6.516 27 O -0.504 6.504 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.412 0.588 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.286 0.714 38 H 0.132 0.868 39 H 0.155 0.845 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 7.776 3.434 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.133 4.133 4 C -0.133 4.133 5 C 0.048 3.952 6 N -0.324 5.324 7 C 0.356 3.644 8 O -0.397 6.397 9 C -0.133 4.133 10 C -0.239 4.239 11 C -0.113 4.113 12 C -0.229 4.229 13 C 0.098 3.902 14 C -0.489 4.489 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.406 5.406 18 Si 0.735 3.265 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.107 4.107 23 C -0.083 4.083 24 C -0.118 4.118 25 C 0.376 3.624 26 O -0.407 6.407 27 O -0.314 6.314 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.250 0.750 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.172 0.828 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.983 7.277 3.035 14.344 hybrid contribution 0.325 -0.698 -0.197 0.795 sum -11.658 6.579 2.838 13.683 Atomic orbital electron populations 1.21027 0.90045 1.02831 1.03374 1.19919 0.96695 0.91211 0.96832 1.20730 0.93216 0.97307 1.02068 1.21180 0.94431 0.96909 1.00758 1.17698 0.83776 0.93486 1.00207 1.43669 1.03517 1.29644 1.55605 1.19067 0.88743 0.79615 0.76951 1.90734 1.70348 1.38345 1.40293 1.19326 0.89198 0.99875 1.04897 1.20315 0.94301 1.01051 1.08280 1.20441 0.93563 0.97873 0.99473 1.21136 0.98263 0.99886 1.03606 1.17583 0.91472 0.91687 0.89501 1.19567 0.99949 0.96323 1.33054 0.89977 1.25966 0.94366 0.98965 0.95256 1.69773 1.16797 1.21389 1.32619 0.86313 0.79777 0.78932 0.81478 1.18929 1.20166 1.18672 1.21589 0.94283 0.96144 0.98640 1.21599 0.92529 0.99199 0.94942 1.18731 0.92948 0.89975 1.10156 1.20869 0.85170 0.84444 0.71953 1.90818 1.15243 1.87827 1.46795 1.84675 1.45116 1.16941 1.84703 0.90792 0.92195 0.89354 0.84800 0.84971 0.75032 0.89182 0.88720 0.88450 0.90260 0.85010 0.82758 0.72960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 8.68 36.01 0.31 -0.94 16 2 C -0.05 -0.56 5.92 -104.18 -0.62 -1.18 16 3 C -0.11 -1.23 9.65 -39.67 -0.38 -1.61 16 4 C -0.11 -1.30 9.95 -39.30 -0.39 -1.69 16 5 C 0.14 2.15 6.29 -83.76 -0.53 1.62 16 6 N -0.68 -10.79 5.29 -10.75 -0.06 -10.85 16 7 C 0.56 11.65 7.52 -12.33 -0.09 11.56 16 8 O -0.52 -12.28 13.95 5.32 0.07 -12.20 16 9 C -0.13 -2.90 5.87 -105.04 -0.62 -3.51 16 10 C -0.22 -4.32 9.55 -38.91 -0.37 -4.70 16 11 C -0.10 -1.92 10.01 -39.73 -0.40 -2.32 16 12 C -0.21 -4.76 9.78 -38.81 -0.38 -5.14 16 13 C 0.10 2.55 5.55 -106.87 -0.59 1.96 16 14 C -0.46 -11.70 9.04 -37.73 -0.34 -12.05 16 15 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 16 C 0.07 1.82 5.11 -17.34 -0.09 1.73 16 17 N -0.78 -20.08 11.09 55.55 0.62 -19.46 16 18 Si 0.91 18.31 29.60 -169.99 -5.03 13.28 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.09 -2.21 8.23 -38.44 -0.32 -2.52 16 23 C -0.06 -1.02 8.22 -38.96 -0.32 -1.34 16 24 C -0.12 -1.70 5.87 -105.00 -0.62 -2.32 16 25 C 0.53 7.57 8.20 34.62 0.28 7.85 16 26 O -0.52 -7.64 14.15 -19.24 -0.27 -7.91 16 27 O -0.50 -6.51 12.70 -40.51 -0.51 -7.02 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 30 H 0.09 1.08 5.94 -51.93 -0.31 0.77 16 31 H 0.13 1.02 8.05 -52.49 -0.42 0.59 16 32 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.41 5.34 6.84 -40.82 -0.28 5.07 16 34 H 0.09 1.42 6.39 -52.49 -0.34 1.08 16 35 H 0.09 1.61 8.06 -52.48 -0.42 1.18 16 36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 38 H 0.13 3.64 5.88 -52.49 -0.31 3.34 16 39 H 0.15 2.92 5.92 -52.48 -0.31 2.61 16 40 H 0.41 3.16 9.11 45.56 0.42 3.57 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -30.58 346.20 -8.63 -39.21 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -3.21 Total: 14.32 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -5.45 Total: -14.58 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.56 Total: -30.31 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.71 Total: -27.14 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.58 -8.63 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097228721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.387 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds