Wall clock time and date at job start Tue Mar 31 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 N 1.46505 * 109.47092 * 180.02562 * 20 18 17 22 22 C 1.36374 * 125.96343 * 269.69251 * 21 20 18 23 23 O 1.35627 * 125.98830 * 0.03764 * 22 21 20 24 24 N 1.30904 * 108.02061 * 179.88499 * 22 21 20 25 25 N 1.40115 * 107.94382 * 0.37323 * 24 22 21 26 26 C 1.30909 * 107.93546 * 359.76254 * 25 24 22 27 27 O 1.35634 * 125.98559 * 179.97438 * 26 25 24 28 28 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 29 29 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 32 32 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 33 33 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 34 34 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 35 35 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 36 36 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 37 37 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 39 39 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 40 40 H 0.96692 * 113.99997 * 89.99795 * 23 22 21 41 41 H 0.96700 * 114.00022 * 270.02466 * 27 26 25 42 42 H 1.09002 * 110.48043 * 217.71140 * 28 14 13 43 43 H 1.09002 * 110.60152 * 95.12776 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6658 -7.0821 -0.2796 17 7 1.2478 -8.3462 -0.7373 18 6 0.4455 -9.3819 -1.0540 19 8 -0.7582 -9.2672 -0.9604 20 6 1.0442 -10.6824 -1.5242 21 7 -0.0279 -11.6411 -1.8030 22 6 -0.5633 -12.5251 -0.9133 23 8 -0.1969 -12.6701 0.3845 24 7 -1.4950 -13.2068 -1.5304 25 7 -1.5547 -12.7547 -2.8553 26 6 -0.6608 -11.8092 -2.9993 27 8 -0.4080 -11.1183 -4.1387 28 6 1.1963 -4.7884 0.6130 29 1 -0.4849 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 1.4299 -3.9357 -2.0723 32 1 3.1933 -3.6965 -1.8646 33 1 3.5467 -5.9180 -1.2443 34 1 2.0274 -6.1950 -2.1411 35 1 0.0885 -7.2556 0.6285 36 1 0.0124 -6.6813 -1.0545 37 1 2.2106 -8.4381 -0.8118 38 1 1.6216 -10.5094 -2.4324 39 1 1.6976 -11.0829 -0.7491 40 1 -0.6916 -12.1097 0.9978 41 1 0.2663 -11.5221 -4.7021 42 1 1.2908 -4.7954 1.6988 43 1 0.1521 -4.6715 0.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689015351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:36 Heat of formation + Delta-G solvation = -14.489655 kcal Electronic energy + Delta-G solvation = -27004.302289 eV Core-core repulsion = 22894.594555 eV Total energy + Delta-G solvation = -4109.707734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71791 -40.14611 -38.60331 -38.29984 -37.50753 -35.24532 -34.73670 -33.52032 -30.97243 -29.97126 -29.59190 -28.42233 -27.11787 -24.43586 -23.20369 -23.13470 -22.49467 -21.30905 -19.95683 -19.60483 -19.30675 -19.07519 -17.99128 -17.33665 -17.18358 -16.65973 -16.23503 -15.93757 -15.69805 -15.24451 -15.03215 -14.45286 -13.98741 -13.81302 -13.68757 -13.34258 -13.25241 -12.93401 -12.83553 -12.72923 -12.31572 -11.94426 -11.79909 -11.27739 -11.11047 -10.95445 -10.94981 -10.83419 -10.72888 -10.66147 -10.40275 -10.23450 -10.14257 -9.90970 -9.81760 -9.70988 -9.46607 -8.92964 -7.00450 -5.81214 -3.10349 1.01416 1.30054 1.83435 2.00945 2.61975 2.83355 3.32120 3.40061 3.44593 3.45915 3.87019 4.07604 4.28163 4.53177 4.64189 4.76662 4.78556 4.78903 4.91970 5.22437 5.38066 5.41834 5.53383 5.59385 5.63222 5.76234 5.83499 5.84538 5.91639 6.03777 6.17903 6.22149 6.35156 6.47145 6.58640 6.59825 6.78014 6.83877 6.98695 7.01880 7.48790 7.64848 7.65359 8.37456 9.48248 10.06415 10.40204 11.41245 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.001959 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.158449 B =14291.041982 C =14448.142232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.178 3.822 11 H 0.056 0.944 12 C -0.145 4.145 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.717 5.717 18 C 0.493 3.507 19 O -0.524 6.524 20 C 0.082 3.918 21 N -0.498 5.498 22 C 0.416 3.584 23 O -0.438 6.438 24 N -0.293 5.293 25 N -0.294 5.294 26 C 0.418 3.582 27 O -0.432 6.432 28 C -0.123 4.123 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.403 0.597 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.416 0.584 41 H 0.411 0.589 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.351 -25.437 -2.787 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.067 3.933 11 H 0.074 0.926 12 C -0.186 4.186 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.369 5.369 18 C 0.276 3.724 19 O -0.399 6.399 20 C -0.046 4.046 21 N -0.219 5.219 22 C 0.106 3.894 23 O -0.239 6.239 24 N -0.136 5.136 25 N -0.138 5.138 26 C 0.108 3.892 27 O -0.231 6.231 28 C -0.163 4.163 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.275 0.725 41 H 0.269 0.731 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.387 -26.207 -3.002 26.923 hybrid contribution 1.897 2.141 0.217 2.869 sum 7.284 -24.065 -2.785 25.297 Atomic orbital electron populations 1.69647 1.05123 1.25866 1.57392 1.24764 0.95525 0.97760 1.02897 0.86269 0.78530 0.83551 0.77825 1.21272 1.21677 1.21258 1.19202 0.90944 0.84154 1.43052 0.91240 1.42381 1.05768 0.99769 1.88076 1.21146 0.94308 0.85630 0.92254 0.92610 1.23088 1.01443 0.92637 1.01403 1.22216 0.99346 0.98256 0.96037 1.21970 0.96367 0.95605 0.98030 0.90703 1.21660 0.96206 0.81721 1.00072 1.45985 1.10263 1.13217 1.67483 1.20587 0.87742 0.85397 0.78633 1.90822 1.14262 1.82756 1.52093 1.21733 0.89168 0.87952 1.05760 1.46599 1.32942 1.31048 1.11282 1.21275 0.92636 0.89855 0.85661 1.84885 1.63359 1.65856 1.09773 1.78379 1.13863 1.22419 0.98964 1.78386 1.17826 1.10056 1.07545 1.21272 0.92532 0.93291 0.82119 1.85041 1.62562 1.48426 1.27098 1.22616 1.00562 0.93258 0.99827 0.93391 0.78178 0.91822 0.92502 0.92359 0.92459 0.91261 0.90822 0.76286 0.85515 0.85136 0.72527 0.73114 0.91690 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.42 5.23 -51.51 -0.27 -17.69 16 10 C 0.18 3.25 3.56 -65.95 -0.23 3.01 16 11 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 12 C -0.14 -2.32 6.51 -25.07 -0.16 -2.48 16 13 C -0.12 -1.33 6.19 -25.61 -0.16 -1.49 16 14 C -0.10 -1.05 2.96 -89.50 -0.27 -1.31 16 15 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 16 C 0.13 1.28 4.69 -4.05 -0.02 1.26 16 17 N -0.72 -5.05 5.34 -60.30 -0.32 -5.38 16 18 C 0.49 4.21 7.90 -10.99 -0.09 4.12 16 19 O -0.52 -7.25 16.43 5.56 0.09 -7.16 16 20 C 0.08 0.39 6.49 -5.19 -0.03 0.35 16 21 N -0.50 -4.21 2.25 -121.35 -0.27 -4.48 16 22 C 0.42 4.11 9.15 -88.81 -0.81 3.29 16 23 O -0.44 -2.98 13.58 -18.58 -0.25 -3.24 16 24 N -0.29 -3.80 12.72 29.65 0.38 -3.43 16 25 N -0.29 -3.85 12.72 29.66 0.38 -3.47 16 26 C 0.42 4.20 9.15 -88.81 -0.81 3.39 16 27 O -0.43 -3.10 13.58 -18.60 -0.25 -3.36 16 28 C -0.12 -1.79 5.98 -25.09 -0.15 -1.94 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.38 9.96 7.76 -40.82 -0.32 9.65 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.60 7.61 -51.93 -0.40 0.20 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 1.57 8.35 -40.82 -0.34 1.22 16 38 H 0.13 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.42 1.26 9.06 45.56 0.41 1.67 16 41 H 0.41 0.33 9.06 45.56 0.41 0.74 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -38.85 370.90 -6.62 -45.47 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.40 Total: 6.24 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.98 Total: 1.01 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.61 Total: -61.55 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.41 Total: -13.75 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.85 -6.62 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689015351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.980 kcal (2) G-P(sol) polarization free energy of solvation -38.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds