Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 N 1.46505 * 109.47092 * 180.02562 * 20 18 17 22 22 C 1.36374 * 125.96343 * 269.69251 * 21 20 18 23 23 O 1.35627 * 125.98830 * 0.03764 * 22 21 20 24 24 N 1.30904 * 108.02061 * 179.88499 * 22 21 20 25 25 N 1.40115 * 107.94382 * 0.37323 * 24 22 21 26 26 C 1.30909 * 107.93546 * 359.76254 * 25 24 22 27 27 O 1.35634 * 125.98559 * 179.97438 * 26 25 24 28 28 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 29 29 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 32 32 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 33 33 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 34 34 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 35 35 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 36 36 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 37 37 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 39 39 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 40 40 H 0.96692 * 113.99997 * 89.99795 * 23 22 21 41 41 H 0.96700 * 114.00022 * 270.02466 * 27 26 25 42 42 H 1.09002 * 110.48043 * 217.71140 * 28 14 13 43 43 H 1.09002 * 110.60152 * 95.12776 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6658 -7.0821 -0.2796 17 7 1.2478 -8.3462 -0.7373 18 6 0.4455 -9.3819 -1.0540 19 8 -0.7582 -9.2672 -0.9604 20 6 1.0442 -10.6824 -1.5242 21 7 -0.0279 -11.6411 -1.8030 22 6 -0.5633 -12.5251 -0.9133 23 8 -0.1969 -12.6701 0.3845 24 7 -1.4950 -13.2068 -1.5304 25 7 -1.5547 -12.7547 -2.8553 26 6 -0.6608 -11.8092 -2.9993 27 8 -0.4080 -11.1183 -4.1387 28 6 1.1963 -4.7884 0.6130 29 1 -0.4849 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 1.4299 -3.9357 -2.0723 32 1 3.1933 -3.6965 -1.8646 33 1 3.5467 -5.9180 -1.2443 34 1 2.0274 -6.1950 -2.1411 35 1 0.0885 -7.2556 0.6285 36 1 0.0124 -6.6813 -1.0545 37 1 2.2106 -8.4381 -0.8118 38 1 1.6216 -10.5094 -2.4324 39 1 1.6976 -11.0829 -0.7491 40 1 -0.6916 -12.1097 0.9978 41 1 0.2663 -11.5221 -4.7021 42 1 1.2908 -4.7954 1.6988 43 1 0.1521 -4.6715 0.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689015351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -52.138842 kcal Electronic energy + Delta-G solvation = -27005.934880 eV Core-core repulsion = 22894.594555 eV Total energy + Delta-G solvation = -4111.340325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.38585 -40.89596 -39.43365 -39.16220 -38.06836 -36.41386 -35.38516 -35.05040 -32.63788 -30.70894 -30.67442 -29.33597 -28.35754 -25.74522 -24.72840 -23.88921 -23.15679 -22.04181 -21.17126 -20.68440 -19.86483 -19.75584 -19.18026 -18.56440 -17.98910 -17.31620 -17.11532 -16.77059 -16.53112 -16.33040 -16.17977 -15.64497 -15.23877 -15.03042 -14.49308 -14.37335 -14.19457 -13.92119 -13.62849 -13.47029 -13.37829 -13.25931 -12.95093 -12.67166 -12.56131 -12.40686 -12.16674 -11.99553 -11.83518 -11.78123 -11.64881 -11.60566 -11.50746 -11.23312 -10.88934 -10.78527 -10.56588 -10.19828 -8.98521 -7.94523 -5.22656 0.37783 0.72375 1.12565 1.40289 1.46417 1.49296 1.55437 2.01252 2.20748 2.56257 2.84523 3.37624 3.47211 3.52774 3.69501 3.79977 3.81381 4.06311 4.15948 4.25377 4.30778 4.38844 4.48085 4.63193 4.65474 4.66561 4.79013 4.80653 4.89418 5.09883 5.13925 5.21110 5.22561 5.30145 5.45657 5.49889 5.56825 5.64428 6.18959 6.28201 6.37379 6.47031 6.77418 7.10348 7.33202 8.12658 8.33190 9.29032 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.001959 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.158449 B =14291.041982 C =14448.142232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.738 5.738 10 C 0.163 3.837 11 H 0.057 0.943 12 C -0.142 4.142 13 C -0.106 4.106 14 C -0.082 4.082 15 H 0.110 0.890 16 C 0.134 3.866 17 N -0.699 5.699 18 C 0.493 3.507 19 O -0.584 6.584 20 C 0.085 3.915 21 N -0.495 5.495 22 C 0.424 3.576 23 O -0.432 6.432 24 N -0.340 5.340 25 N -0.344 5.344 26 C 0.427 3.573 27 O -0.436 6.436 28 C -0.119 4.119 29 H 0.250 0.750 30 H 0.370 0.630 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.424 0.576 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.432 0.568 41 H 0.437 0.563 42 H 0.069 0.931 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 -26.885 -2.741 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.054 3.946 11 H 0.075 0.925 12 C -0.182 4.182 13 C -0.144 4.144 14 C -0.101 4.101 15 H 0.128 0.872 16 C 0.010 3.990 17 N -0.352 5.352 18 C 0.278 3.722 19 O -0.463 6.463 20 C -0.041 4.041 21 N -0.215 5.215 22 C 0.113 3.887 23 O -0.235 6.235 24 N -0.184 5.184 25 N -0.188 5.188 26 C 0.116 3.884 27 O -0.240 6.240 28 C -0.158 4.158 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.262 0.738 38 H 0.185 0.815 39 H 0.187 0.813 40 H 0.294 0.706 41 H 0.301 0.699 42 H 0.088 0.912 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.983 -27.700 -2.965 29.270 hybrid contribution 0.887 2.592 0.211 2.748 sum 9.870 -25.107 -2.755 27.118 Atomic orbital electron populations 1.69818 1.06702 1.26019 1.59821 1.25592 0.96364 1.01233 1.04119 0.85220 0.77159 0.79217 0.78244 1.20394 1.22526 1.20209 1.19629 0.91460 0.85311 1.40606 0.90450 1.42638 1.05359 1.01285 1.88341 1.21499 0.94439 0.84485 0.94167 0.92479 1.22917 0.99870 0.96615 0.98829 1.22149 1.01628 0.94014 0.96644 1.21829 0.96618 0.93527 0.98126 0.87231 1.21327 0.95735 0.82952 0.98951 1.45723 1.11272 1.11724 1.66498 1.21243 0.86975 0.86557 0.77381 1.90818 1.17009 1.83871 1.54650 1.22126 0.88102 0.85014 1.08852 1.46643 1.33387 1.31124 1.10339 1.21316 0.91623 0.89281 0.86525 1.84866 1.63413 1.66498 1.08750 1.78234 1.16101 1.24552 0.99501 1.78243 1.19981 1.12408 1.08132 1.21311 0.91705 0.92215 0.83191 1.85007 1.63934 1.48391 1.26647 1.22513 0.99010 0.94161 1.00151 0.94167 0.79849 0.94617 0.93132 0.89051 0.91250 0.92088 0.93579 0.73791 0.81475 0.81327 0.70585 0.69928 0.91249 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.86 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 45.72 29.55 68.60 2.03 47.74 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -12.99 9.96 84.04 0.84 -12.15 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.45 5.23 -316.89 -1.66 -38.11 16 10 C 0.16 5.86 3.56 46.27 0.16 6.02 16 11 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 12 C -0.14 -4.38 6.51 31.67 0.21 -4.18 16 13 C -0.11 -1.96 6.19 31.32 0.19 -1.76 16 14 C -0.08 -1.44 2.96 -10.07 -0.03 -1.47 16 15 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 16 C 0.13 2.42 4.69 86.38 0.41 2.83 16 17 N -0.70 -7.09 5.34 -463.08 -2.47 -9.57 16 18 C 0.49 6.90 7.90 87.66 0.69 7.59 16 19 O -0.58 -15.56 16.43 -3.03 -0.05 -15.61 16 20 C 0.08 0.43 6.49 85.63 0.56 0.98 16 21 N -0.49 -7.20 2.25 -759.26 -1.71 -8.91 16 22 C 0.42 7.83 9.15 179.72 1.65 9.47 16 23 O -0.43 -5.00 13.58 -89.39 -1.21 -6.21 16 24 N -0.34 -8.93 12.72 -173.66 -2.21 -11.14 16 25 N -0.34 -9.08 12.72 -173.65 -2.21 -11.29 16 26 C 0.43 8.04 9.15 179.72 1.65 9.68 16 27 O -0.44 -5.36 13.58 -89.47 -1.21 -6.58 16 28 C -0.12 -3.35 5.98 31.66 0.19 -3.16 16 29 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.37 20.02 7.76 -92.71 -0.72 19.30 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.17 7.61 -2.38 -0.02 1.15 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.42 0.83 8.35 -92.71 -0.77 0.06 16 38 H 0.17 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.17 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.43 1.83 9.06 -74.06 -0.67 1.16 16 41 H 0.44 -0.52 9.06 -74.06 -0.67 -1.19 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.60 7.73 -2.39 -0.02 1.58 16 Total: -1.00 -90.61 370.90 -5.19 -95.80 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -1.74 Total: 13.77 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.97 Total: 9.67 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -9.97 Total: -138.58 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -2.48 Total: -28.40 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -90.61 -5.19 -95.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689015351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.657 kcal (2) G-P(sol) polarization free energy of solvation -90.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds