Wall clock time and date at job start Tue Mar 31 2020 04:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36928 * 119.99936 * 2 1 4 4 H 1.08003 * 120.00077 * 144.56513 * 3 2 1 5 5 C 1.38807 * 120.00302 * 324.56977 * 3 2 1 6 6 N 1.31624 * 120.00636 * 157.65391 * 5 3 2 7 7 Si 1.86801 * 119.99950 * 337.65512 * 5 3 2 8 8 H 1.48503 * 109.47474 * 95.56074 * 7 5 3 9 9 H 1.48504 * 109.47184 * 215.56048 * 7 5 3 10 10 H 1.48500 * 109.46953 * 335.55860 * 7 5 3 11 11 C 1.46502 * 119.99741 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.49164 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49793 * 60.00080 * 11 2 1 14 14 C 1.53040 * 109.53757 * 178.64736 * 13 11 2 15 15 C 1.53189 * 109.30939 * 61.36826 * 14 13 11 16 16 N 1.46924 * 108.77677 * 305.36120 * 15 14 13 17 17 C 1.34777 * 120.63323 * 233.59357 * 16 15 14 18 18 O 1.21279 * 120.00175 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99884 * 359.97438 * 17 16 15 20 20 N 1.46502 * 109.46979 * 180.02562 * 19 17 16 21 21 C 1.36373 * 125.95967 * 90.00797 * 20 19 17 22 22 O 1.35625 * 125.99010 * 0.23462 * 21 20 19 23 23 N 1.30906 * 108.02060 * 179.97438 * 21 20 19 24 24 N 1.40117 * 107.93880 * 359.97438 * 23 21 20 25 25 C 1.30897 * 107.94177 * 0.02562 * 24 23 21 26 26 O 1.35635 * 125.98926 * 180.02562 * 25 24 23 27 27 C 1.46924 * 118.73903 * 53.86144 * 16 15 14 28 28 H 1.09006 * 109.47208 * 268.02872 * 1 2 3 29 29 H 1.08998 * 109.47248 * 28.02837 * 1 2 3 30 30 H 1.09004 * 109.47099 * 148.03130 * 1 2 3 31 31 H 0.96992 * 120.00641 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46059 * 58.62577 * 13 11 2 33 33 H 1.08997 * 109.45879 * 298.66958 * 13 11 2 34 34 H 1.09001 * 109.49444 * 301.41497 * 14 13 11 35 35 H 1.08997 * 109.49615 * 181.31682 * 14 13 11 36 36 H 1.09003 * 109.58059 * 185.57982 * 15 14 13 37 37 H 1.08999 * 109.70669 * 65.22520 * 15 14 13 38 38 H 1.09000 * 109.46846 * 60.00697 * 19 17 16 39 39 H 1.09002 * 109.47309 * 300.00625 * 19 17 16 40 40 H 0.96704 * 114.00157 * 269.71821 * 22 21 20 41 41 H 0.96698 * 114.00081 * 89.97128 * 26 25 24 42 42 H 1.09003 * 109.58599 * 65.92999 * 27 16 15 43 43 H 1.08996 * 109.58992 * 186.35406 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0797 1.2725 0.5423 5 6 1.6485 2.2767 -0.6969 6 7 2.0217 3.4955 -0.3686 7 14 0.4441 2.0150 -2.1006 8 1 -0.9445 2.1640 -1.5959 9 1 0.6954 3.0222 -3.1627 10 1 0.6241 0.6510 -2.6595 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8282 -2.0724 -1.2485 14 6 2.6182 -3.3830 -1.2659 15 6 2.2509 -4.2123 -0.0314 16 7 2.4666 -3.3938 1.1695 17 6 3.2376 -3.8449 2.1787 18 8 3.4075 -3.1598 3.1649 19 6 3.8876 -5.2011 2.0821 20 7 4.6661 -5.4570 3.2965 21 6 4.2053 -6.0555 4.4319 22 8 2.9477 -6.5218 4.6329 23 7 5.1910 -6.1061 5.2918 24 7 6.3165 -5.5248 4.6927 25 6 5.9783 -5.1393 3.4884 26 8 6.7909 -4.5311 2.5887 27 6 1.8210 -2.0765 1.2519 28 1 -0.3634 -0.0354 1.0271 29 1 -0.3633 0.9071 -0.4829 30 1 -0.3633 -0.8718 -0.5441 31 1 1.6717 4.2577 -0.8558 32 1 2.0692 -1.4912 -2.1386 33 1 0.7606 -2.2919 -1.2365 34 1 3.6859 -3.1643 -1.2529 35 1 2.3721 -3.9440 -2.1675 36 1 2.8819 -5.1000 0.0133 37 1 1.2040 -4.5106 -0.0872 38 1 4.5475 -5.2268 1.2150 39 1 3.1183 -5.9660 1.9761 40 1 2.3425 -5.8701 5.0127 41 1 7.2640 -5.1436 2.0090 42 1 0.7392 -2.2020 1.2973 43 1 2.1681 -1.5546 2.1435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027664621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:37 Heat of formation + Delta-G solvation = 23.316808 kcal Electronic energy + Delta-G solvation = -28679.857948 eV Core-core repulsion = 24571.789626 eV Total energy + Delta-G solvation = -4108.068323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55737 -40.27306 -38.44223 -37.85556 -37.34684 -35.49571 -34.58592 -32.59815 -31.70264 -30.04231 -29.81080 -28.25146 -26.27979 -25.23134 -23.84932 -23.03569 -22.32459 -21.95006 -20.33249 -19.23627 -19.10219 -18.66463 -17.81551 -17.01858 -16.91056 -16.53991 -15.89825 -15.67393 -15.58802 -15.20922 -14.44938 -14.37561 -14.15539 -13.87441 -13.56917 -13.37654 -13.18003 -12.76493 -12.70286 -12.66153 -12.58431 -12.39434 -12.28112 -11.66125 -11.45689 -11.21341 -10.91076 -10.82719 -10.79733 -10.64614 -10.52164 -10.26567 -10.04455 -9.81679 -9.65326 -9.61973 -8.89509 -8.51993 -6.98154 -6.06486 -3.48455 1.17987 1.48443 1.99058 2.25506 2.72435 2.98839 3.23176 3.38547 3.42476 3.47182 3.99622 4.04648 4.42007 4.43560 4.53741 4.81838 4.92455 4.94584 4.97204 5.00322 5.21482 5.26797 5.39481 5.40673 5.56569 5.64939 5.78540 5.81914 5.92071 6.05504 6.15224 6.19393 6.32501 6.39227 6.59517 6.68068 6.72851 6.74475 7.01143 7.18952 7.64691 7.85575 7.94623 8.28572 8.87004 9.61304 9.98024 11.08906 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.003123 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.395505 B = 8962.945025 C = 9265.194130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.601 5.601 3 C -0.273 4.273 4 H 0.081 0.919 5 C 0.035 3.965 6 N -0.898 5.898 7 Si 0.886 3.114 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.076 0.924 13 C -0.140 4.140 14 C -0.132 4.132 15 C 0.104 3.896 16 N -0.599 5.599 17 C 0.496 3.504 18 O -0.524 6.524 19 C 0.083 3.917 20 N -0.497 5.497 21 C 0.415 3.585 22 O -0.439 6.439 23 N -0.294 5.294 24 N -0.296 5.296 25 C 0.419 3.581 26 O -0.430 6.430 27 C 0.099 3.901 28 H 0.017 0.983 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.415 0.585 41 H 0.409 0.591 42 H 0.065 0.935 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -23.125 -1.263 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.324 5.324 3 C -0.401 4.401 4 H 0.098 0.902 5 C -0.166 4.166 6 N -0.539 5.539 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.094 0.906 13 C -0.179 4.179 14 C -0.171 4.171 15 C -0.019 4.019 16 N -0.333 5.333 17 C 0.280 3.720 18 O -0.400 6.400 19 C -0.044 4.044 20 N -0.217 5.217 21 C 0.105 3.895 22 O -0.240 6.240 23 N -0.138 5.138 24 N -0.140 5.140 25 C 0.109 3.891 26 O -0.230 6.230 27 C -0.024 4.024 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.275 0.725 41 H 0.267 0.733 42 H 0.083 0.917 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.695 -22.802 0.568 22.872 hybrid contribution -1.770 0.418 -2.440 3.043 sum -0.075 -22.384 -1.872 22.462 Atomic orbital electron populations 1.21355 0.84900 0.99122 0.98299 1.44026 1.00476 1.01497 1.86384 1.18808 1.08166 0.86309 1.26853 0.90174 1.25421 0.98209 0.95129 0.97821 1.69870 1.46022 0.97685 1.40278 0.86838 0.80385 0.77570 0.83574 1.21560 1.23091 1.19493 1.20802 0.97180 0.85667 0.90371 0.90611 1.22169 0.99509 0.95118 1.01120 1.21917 1.01393 0.97207 0.96560 1.21847 1.01776 0.93262 0.84967 1.48165 1.48420 1.19430 1.17269 1.20496 0.79794 0.87898 0.83786 1.90807 1.60609 1.57624 1.30938 1.21803 0.97851 0.97725 0.87061 1.46635 1.11354 1.48393 1.15357 1.21243 0.89100 0.94988 0.84126 1.84867 1.15444 1.39504 1.84174 1.78353 0.96145 1.20017 1.19302 1.78360 1.16451 1.15873 1.03313 1.21263 0.80836 0.95711 0.91281 1.85062 1.56882 1.32886 1.48131 1.22517 0.96579 0.80960 1.02354 0.96524 0.93550 0.95054 0.92586 0.91163 0.92360 0.91325 0.90861 0.90530 0.90791 0.85658 0.85403 0.72546 0.73250 0.91684 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.21 8.45 59.85 0.51 2.71 16 2 N -0.60 -13.46 2.42 -173.08 -0.42 -13.87 16 3 C -0.27 -7.45 9.85 -15.07 -0.15 -7.60 16 4 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 5 C 0.03 0.99 5.31 -17.43 -0.09 0.89 16 6 N -0.90 -27.09 13.97 55.49 0.78 -26.32 16 7 Si 0.89 21.52 24.94 -169.99 -4.24 17.28 16 8 H -0.29 -6.82 6.67 56.52 0.38 -6.44 16 9 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 C 0.17 3.00 2.76 -67.58 -0.19 2.82 16 12 H 0.08 1.49 7.89 -51.93 -0.41 1.08 16 13 C -0.14 -2.00 5.11 -26.69 -0.14 -2.14 16 14 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 15 C 0.10 0.81 6.34 -3.71 -0.02 0.78 16 16 N -0.60 -7.00 2.97 -172.51 -0.51 -7.51 16 17 C 0.50 6.08 7.77 -10.98 -0.09 6.00 16 18 O -0.52 -9.13 15.84 5.56 0.09 -9.04 16 19 C 0.08 0.64 4.84 -5.19 -0.03 0.61 16 20 N -0.50 -5.32 2.25 -121.35 -0.27 -5.59 16 21 C 0.42 4.89 9.15 -88.81 -0.81 4.07 16 22 O -0.44 -3.76 13.58 -18.57 -0.25 -4.02 16 23 N -0.29 -4.32 12.72 29.65 0.38 -3.94 16 24 N -0.30 -4.40 12.72 29.65 0.38 -4.02 16 25 C 0.42 5.09 9.15 -88.82 -0.81 4.27 16 26 O -0.43 -4.05 13.58 -18.60 -0.25 -4.31 16 27 C 0.10 1.55 5.81 -3.49 -0.02 1.53 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 1.05 3.08 -51.93 -0.16 0.89 16 30 H 0.03 0.54 6.46 -51.93 -0.34 0.21 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.81 6.73 -51.93 -0.35 0.46 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.32 5.93 -51.93 -0.31 0.01 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.13 0.59 7.69 -51.93 -0.40 0.19 16 39 H 0.13 0.60 7.94 -51.93 -0.41 0.19 16 40 H 0.42 2.04 9.06 45.56 0.41 2.46 16 41 H 0.41 1.14 9.06 45.56 0.41 1.56 16 42 H 0.06 0.97 7.53 -51.93 -0.39 0.58 16 43 H 0.09 1.78 7.00 -51.93 -0.36 1.42 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -38.59 351.94 -5.02 -43.61 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.00 Total: -0.11 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -2.00 Total: 12.54 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.33 Total: -61.26 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.42 Total: -17.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.24 Total: 17.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.59 -5.02 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027664621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.931 kcal (2) G-P(sol) polarization free energy of solvation -38.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds